Wall clock time and date at job start Mon Mar 30 2020 06:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 O 1.42905 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.35986 * 116.99959 * 179.97438 * 4 3 2 6 6 C 1.38699 * 119.99517 * 359.72674 * 5 4 3 7 7 C 1.38142 * 119.99254 * 179.76668 * 6 5 4 8 8 C 1.38696 * 120.00185 * 0.50815 * 7 6 5 9 9 O 1.35972 * 119.99914 * 179.72775 * 8 7 6 10 10 C 1.42905 * 117.00352 * 0.02562 * 9 8 7 11 11 C 1.52996 * 109.47242 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.47141 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99390 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00067 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99988 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99854 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46696 * 90.00129 * 16 14 12 18 18 H 1.48494 * 109.47006 * 209.99885 * 16 14 12 19 19 H 1.48504 * 109.47072 * 330.00339 * 16 14 12 20 20 C 1.38698 * 120.00033 * 359.73985 * 8 7 6 21 21 C 1.38133 * 119.99925 * 0.02562 * 20 8 7 22 22 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 24 24 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 25 25 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 26 26 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 27 27 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 28 28 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 29 29 H 1.07991 * 120.00693 * 359.97438 * 6 5 4 30 30 H 1.08002 * 119.99354 * 180.22680 * 7 6 5 31 31 H 1.09001 * 109.46474 * 300.00207 * 10 9 8 32 32 H 1.08997 * 109.46754 * 60.00269 * 10 9 8 33 33 H 1.08998 * 109.47600 * 300.00027 * 11 10 9 34 34 H 1.09002 * 109.47560 * 59.99846 * 11 10 9 35 35 H 0.96991 * 119.99809 * 179.97438 * 15 14 12 36 36 H 1.07993 * 119.99998 * 179.97438 * 20 8 7 37 37 H 1.07998 * 120.00006 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0865 2.6540 -0.0012 6 6 3.3310 3.8172 -0.0070 7 6 3.9583 5.0480 -0.0027 8 6 5.3433 5.1206 -0.0034 9 8 5.9607 6.3321 -0.0048 10 6 5.1208 7.4883 -0.0050 11 6 5.9880 8.7487 -0.0073 12 6 5.1023 9.9680 -0.0082 13 1 4.0282 9.8550 -0.0076 14 6 5.6631 11.2275 -0.0097 15 7 6.9711 11.3649 -0.0109 16 14 4.5652 12.7388 -0.0114 17 1 4.2744 13.1408 1.3882 18 1 5.2552 13.8510 -0.7128 19 1 3.2932 12.4257 -0.7110 20 6 6.0987 3.9573 -0.0028 21 6 5.4716 2.7266 -0.0022 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 2.2526 3.7608 -0.0114 30 1 3.3700 5.9538 -0.0035 31 1 4.4908 7.4795 -0.8945 32 1 4.4923 7.4809 0.8855 33 1 6.6184 8.7577 0.8819 34 1 6.6163 8.7559 -0.8980 35 1 7.3656 12.2510 -0.0123 36 1 7.1772 4.0138 -0.0037 37 1 6.0597 1.8208 -0.0022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026514629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:22 Heat of formation + Delta-G solvation = -74.484562 kcal Electronic energy + Delta-G solvation = -17184.525271 eV Core-core repulsion = 14312.866706 eV Total energy + Delta-G solvation = -2871.658564 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.20397 -38.76136 -36.34505 -34.06256 -33.31643 -31.04973 -30.34846 -28.57707 -26.59374 -25.06909 -23.12423 -22.00194 -21.35607 -20.53926 -18.29171 -17.50023 -16.42363 -16.18360 -15.98471 -15.28374 -14.65303 -14.60647 -14.29893 -14.25366 -13.41781 -13.25020 -12.92536 -12.68856 -12.35733 -12.29786 -12.03020 -11.94949 -11.44789 -11.23624 -11.13000 -10.94977 -10.69377 -10.49304 -10.40749 -9.71309 -9.65931 -9.30085 -8.93008 -8.45003 -7.46223 -6.10644 -4.15310 1.40126 1.68366 3.14413 3.26936 3.32899 3.35700 3.88860 3.92054 4.41161 4.57846 4.58594 4.89977 4.91774 4.94515 5.11720 5.12818 5.25738 5.32543 5.38716 5.56716 5.60267 5.63732 5.73259 5.85057 5.98931 6.04044 6.08134 6.21346 6.42358 6.54517 6.67491 6.78430 7.41512 7.52560 7.64490 7.81699 8.07873 8.23908 8.90319 9.48973 11.00979 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.036996 B = 0.003364 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.657543 B = 8321.691207 C = 9041.995040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.059 3.941 4 O -0.320 6.320 5 C 0.076 3.924 6 C -0.166 4.166 7 C -0.174 4.174 8 C 0.112 3.888 9 O -0.316 6.316 10 C 0.065 3.935 11 C 0.025 3.975 12 C -0.527 4.527 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.889 5.889 16 Si 0.899 3.101 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.123 4.123 21 C -0.112 4.112 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.263 0.737 36 H 0.136 0.864 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.787 -20.254 0.017 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.016 4.016 4 O -0.235 6.235 5 C 0.031 3.969 6 C -0.185 4.185 7 C -0.193 4.193 8 C 0.065 3.935 9 O -0.230 6.230 10 C -0.009 4.009 11 C -0.012 4.012 12 C -0.565 4.565 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.528 5.528 16 Si 0.726 3.274 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.142 4.142 21 C -0.131 4.131 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.151 0.849 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.154 0.846 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.359 -20.240 0.010 22.299 hybrid contribution -1.014 1.181 0.009 1.557 sum -10.374 -19.059 0.020 21.699 Atomic orbital electron populations 1.21696 0.94390 1.02398 1.02274 1.21473 0.95923 0.95073 1.03575 1.22797 0.79123 0.98433 1.01288 1.86010 1.20681 1.27094 1.89731 1.18771 0.92191 0.83873 1.02030 1.20991 0.99617 0.91798 1.06101 1.21186 0.93910 0.98399 1.05820 1.19113 0.90935 0.86810 0.96605 1.86184 1.37214 1.12047 1.87535 1.23302 0.94462 0.83601 0.99500 1.19122 0.95356 0.87843 0.98885 1.20975 0.92905 0.90372 1.52233 0.92399 1.24993 0.95101 0.99191 0.94920 1.69975 1.09674 1.23402 1.49703 0.86486 0.80460 0.82219 0.78214 1.20497 1.21036 1.19771 1.20282 1.00261 0.89157 1.04459 1.20150 0.91180 0.97666 1.04069 0.91829 0.92357 0.92352 0.90919 0.90919 0.92269 0.92278 0.85728 0.84918 0.93259 0.93258 0.95384 0.95378 0.92695 0.84576 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.91 6.30 -26.73 -0.17 -1.08 16 3 C 0.06 0.56 4.74 37.16 0.18 0.73 16 4 O -0.32 -4.05 10.14 -19.70 -0.20 -4.25 16 5 C 0.08 1.06 6.69 -39.24 -0.26 0.79 16 6 C -0.17 -2.32 9.03 -39.45 -0.36 -2.68 16 7 C -0.17 -2.79 9.03 -39.45 -0.36 -3.15 16 8 C 0.11 1.98 6.69 -39.24 -0.26 1.72 16 9 O -0.32 -6.58 10.14 -19.65 -0.20 -6.78 16 10 C 0.07 1.41 4.68 37.16 0.17 1.59 16 11 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 12 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 16 Si 0.90 21.28 29.54 -169.99 -5.02 16.25 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 C -0.12 -1.88 9.98 -39.45 -0.39 -2.27 16 21 C -0.11 -1.54 9.98 -39.45 -0.39 -1.94 16 22 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 28 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 29 H 0.12 1.43 6.29 -52.49 -0.33 1.10 16 30 H 0.13 2.06 6.29 -52.49 -0.33 1.73 16 31 H 0.05 1.01 7.66 -51.93 -0.40 0.62 16 32 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 313.75 15.07 4.73 4.73 Total: -1.00 -30.55 313.75 -7.59 -38.14 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -5.60 Total: -2.61 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -2.03 Total: -19.69 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.74 Total: -25.80 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.40 Total: -11.03 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.55 -7.59 -38.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026514629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.345 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds