Wall clock time and date at job start Mon Mar 30 2020 06:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 O 1.42905 * 109.46728 * 180.02562 * 3 2 1 5 5 C 1.35986 * 116.99959 * 179.97438 * 4 3 2 6 6 C 1.38699 * 119.99517 * 359.72674 * 5 4 3 7 7 C 1.38142 * 119.99254 * 179.76668 * 6 5 4 8 8 C 1.38696 * 120.00185 * 0.50815 * 7 6 5 9 9 O 1.35972 * 119.99914 * 179.72775 * 8 7 6 10 10 C 1.42905 * 117.00352 * 0.02562 * 9 8 7 11 11 C 1.52996 * 109.47242 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.47141 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99390 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00067 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99988 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99854 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46696 * 90.00129 * 16 14 12 18 18 H 1.48494 * 109.47006 * 209.99885 * 16 14 12 19 19 H 1.48504 * 109.47072 * 330.00339 * 16 14 12 20 20 C 1.38698 * 120.00033 * 359.73985 * 8 7 6 21 21 C 1.38133 * 119.99925 * 0.02562 * 20 8 7 22 22 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46866 * 300.00212 * 1 2 3 24 24 H 1.08996 * 109.47261 * 59.99820 * 1 2 3 25 25 H 1.09000 * 109.46866 * 239.99788 * 2 1 3 26 26 H 1.09001 * 109.46611 * 119.99905 * 2 1 3 27 27 H 1.09000 * 109.47486 * 60.00167 * 3 2 1 28 28 H 1.09001 * 109.47362 * 299.99445 * 3 2 1 29 29 H 1.07991 * 120.00693 * 359.97438 * 6 5 4 30 30 H 1.08002 * 119.99354 * 180.22680 * 7 6 5 31 31 H 1.09001 * 109.46474 * 300.00207 * 10 9 8 32 32 H 1.08997 * 109.46754 * 60.00269 * 10 9 8 33 33 H 1.08998 * 109.47600 * 300.00027 * 11 10 9 34 34 H 1.09002 * 109.47560 * 59.99846 * 11 10 9 35 35 H 0.96991 * 119.99809 * 179.97438 * 15 14 12 36 36 H 1.07993 * 119.99998 * 179.97438 * 20 8 7 37 37 H 1.07998 * 120.00006 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0865 2.6540 -0.0012 6 6 3.3310 3.8172 -0.0070 7 6 3.9583 5.0480 -0.0027 8 6 5.3433 5.1206 -0.0034 9 8 5.9607 6.3321 -0.0048 10 6 5.1208 7.4883 -0.0050 11 6 5.9880 8.7487 -0.0073 12 6 5.1023 9.9680 -0.0082 13 1 4.0282 9.8550 -0.0076 14 6 5.6631 11.2275 -0.0097 15 7 6.9711 11.3649 -0.0109 16 14 4.5652 12.7388 -0.0114 17 1 4.2744 13.1408 1.3882 18 1 5.2552 13.8510 -0.7128 19 1 3.2932 12.4257 -0.7110 20 6 6.0987 3.9573 -0.0028 21 6 5.4716 2.7266 -0.0022 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 2.2526 3.7608 -0.0114 30 1 3.3700 5.9538 -0.0035 31 1 4.4908 7.4795 -0.8945 32 1 4.4923 7.4809 0.8855 33 1 6.6184 8.7577 0.8819 34 1 6.6163 8.7559 -0.8980 35 1 7.3656 12.2510 -0.0123 36 1 7.1772 4.0138 -0.0037 37 1 6.0597 1.8208 -0.0022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026514629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:22 Heat of formation + Delta-G solvation = -91.536771 kcal Electronic energy + Delta-G solvation = -17185.264710 eV Core-core repulsion = 14312.866706 eV Total energy + Delta-G solvation = -2872.398003 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.36381 -40.01294 -37.56645 -35.44820 -34.68122 -32.48335 -31.97626 -29.82346 -27.36910 -26.96640 -24.39013 -23.23653 -22.43471 -21.92912 -19.51709 -18.90391 -18.04692 -17.26682 -17.22409 -16.87898 -16.50628 -15.79638 -15.29720 -15.04515 -14.61363 -14.54450 -14.24956 -14.18814 -13.75475 -13.38133 -13.12351 -12.92869 -12.87237 -12.73889 -12.48925 -12.15784 -12.07119 -11.72200 -11.64284 -11.55576 -11.35486 -11.18282 -10.61629 -10.07462 -8.69711 -8.26620 -6.40336 0.25631 0.47817 1.41031 1.43312 1.54434 2.21265 2.31458 2.54745 2.74113 3.07845 3.75159 3.84352 3.97254 4.01937 4.16727 4.26061 4.27913 4.31408 4.40002 4.52296 4.56826 4.60416 4.73747 4.81378 4.91767 5.06322 5.13116 5.19962 5.28324 5.32214 5.37211 5.40842 5.47672 5.59173 5.72261 6.06839 6.40184 6.60263 6.74639 7.29829 8.86587 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.036996 B = 0.003364 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.657543 B = 8321.691207 C = 9041.995040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.049 3.951 4 O -0.327 6.327 5 C 0.081 3.919 6 C -0.166 4.166 7 C -0.179 4.179 8 C 0.073 3.927 9 O -0.340 6.340 10 C 0.084 3.916 11 C 0.028 3.972 12 C -0.546 4.546 13 H 0.071 0.929 14 C 0.001 3.999 15 N -0.931 5.931 16 Si 0.976 3.024 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.259 1.259 20 C -0.124 4.124 21 C -0.112 4.112 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.151 0.849 30 H 0.134 0.866 31 H 0.059 0.941 32 H 0.059 0.941 33 H -0.001 1.001 34 H -0.001 1.001 35 H 0.267 0.733 36 H 0.145 0.855 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.083 -21.323 0.019 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.026 4.026 4 O -0.242 6.242 5 C 0.036 3.964 6 C -0.184 4.184 7 C -0.198 4.198 8 C 0.028 3.972 9 O -0.255 6.255 10 C 0.010 3.990 11 C -0.010 4.010 12 C -0.584 4.584 13 H 0.089 0.911 14 C -0.197 4.197 15 N -0.571 5.571 16 Si 0.800 3.200 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.183 1.183 20 C -0.143 4.143 21 C -0.130 4.130 22 H 0.092 0.908 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.169 0.831 30 H 0.152 0.848 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.017 0.983 34 H 0.017 0.983 35 H 0.076 0.924 36 H 0.163 0.837 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.674 -21.345 0.013 24.329 hybrid contribution -0.310 1.313 0.010 1.350 sum -11.984 -20.032 0.023 23.343 Atomic orbital electron populations 1.21693 0.93010 1.03210 1.02596 1.21486 0.96989 0.93684 1.03551 1.23113 0.77370 1.00071 1.02013 1.86026 1.22584 1.26256 1.89289 1.18952 0.92479 0.84465 1.00500 1.21224 1.00997 0.90925 1.05271 1.21275 0.93245 0.99424 1.05866 1.19428 0.92117 0.85976 0.99668 1.86096 1.37703 1.12924 1.88764 1.22846 0.93293 0.82485 1.00399 1.18966 0.95324 0.90634 0.96026 1.21406 0.93715 0.91157 1.52118 0.91110 1.26049 0.96612 1.02920 0.94165 1.70120 1.11854 1.24441 1.50636 0.85282 0.78615 0.77493 0.78659 1.19545 1.20674 1.18281 1.20473 1.00833 0.89021 1.03953 1.20417 0.91638 0.97841 1.03115 0.90828 0.92042 0.92036 0.90972 0.90972 0.91506 0.91513 0.83147 0.84811 0.92275 0.92252 0.98308 0.98302 0.92436 0.83736 0.82509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.12 -1.49 6.30 30.60 0.19 -1.29 16 3 C 0.05 0.80 4.74 71.98 0.34 1.14 16 4 O -0.33 -7.45 10.14 -93.39 -0.95 -8.40 16 5 C 0.08 2.09 6.69 22.49 0.15 2.24 16 6 C -0.17 -4.28 9.03 22.36 0.20 -4.08 16 7 C -0.18 -5.59 9.03 22.36 0.20 -5.39 16 8 C 0.07 2.60 6.69 22.49 0.15 2.75 16 9 O -0.34 -14.57 10.14 -93.23 -0.95 -15.52 16 10 C 0.08 3.71 4.68 71.98 0.34 4.05 16 11 C 0.03 1.52 5.34 29.85 0.16 1.68 16 12 C -0.55 -30.92 9.11 25.60 0.23 -30.69 16 13 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 14 C 0.00 0.06 5.46 84.65 0.46 0.52 16 15 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 16 Si 0.98 43.47 29.54 68.60 2.03 45.50 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 20 C -0.12 -3.74 9.98 22.35 0.22 -3.51 16 21 C -0.11 -2.88 9.98 22.35 0.22 -2.65 16 22 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 23 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 1.00 7.67 -2.39 -0.02 0.98 16 28 H 0.07 1.00 7.65 -2.39 -0.02 0.98 16 29 H 0.15 3.02 6.29 -2.92 -0.02 3.00 16 30 H 0.13 4.05 6.29 -2.91 -0.02 4.03 16 31 H 0.06 2.45 7.66 -2.39 -0.02 2.43 16 32 H 0.06 2.46 7.66 -2.39 -0.02 2.44 16 33 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 36 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -66.33 313.75 5.04 -61.29 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.03 Total: 9.56 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 3.59 Total: -35.84 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.28 Total: -56.59 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -1.89 Total: -23.92 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.33 5.04 -61.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026514629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.248 kcal (2) G-P(sol) polarization free energy of solvation -66.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds