Wall clock time and date at job start Mon Mar 30 2020 06:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47138 * 2 1 4 4 H 1.09001 * 109.46753 * 54.99969 * 3 2 1 5 5 O 1.42888 * 109.47199 * 295.00047 * 3 2 1 6 6 C 1.50698 * 109.47197 * 174.99483 * 3 2 1 7 7 C 1.38169 * 120.02482 * 95.00316 * 6 3 2 8 8 C 1.38242 * 120.05457 * 180.02562 * 7 6 3 9 9 C 1.38295 * 120.11401 * 359.97438 * 8 7 6 10 10 C 1.38122 * 120.05026 * 0.02562 * 9 8 7 11 11 C 1.38711 * 120.02969 * 275.02757 * 6 3 2 12 12 O 1.35896 * 120.05694 * 359.95321 * 11 6 3 13 13 C 1.42903 * 117.00251 * 180.02562 * 12 11 6 14 14 C 1.53000 * 109.47308 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46769 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00426 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99284 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00416 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99762 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46920 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47113 * 119.99880 * 19 17 15 22 22 H 1.48496 * 109.47237 * 240.00424 * 19 17 15 23 23 H 1.09004 * 109.46590 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47067 * 299.99883 * 1 2 3 25 25 H 1.09008 * 109.47003 * 60.00117 * 1 2 3 26 26 H 1.09004 * 109.47358 * 239.99777 * 2 1 3 27 27 H 1.08999 * 109.46938 * 120.00109 * 2 1 3 28 28 H 0.96705 * 114.00195 * 299.99437 * 5 3 2 29 29 H 1.07998 * 119.97385 * 0.02562 * 7 6 3 30 30 H 1.07997 * 119.94707 * 180.02562 * 8 7 6 31 31 H 1.07997 * 119.97026 * 179.74858 * 9 8 7 32 32 H 1.08002 * 120.02294 * 179.97438 * 10 9 8 33 33 H 1.09005 * 109.47023 * 300.00310 * 13 12 11 34 34 H 1.09001 * 109.47048 * 59.99886 * 13 12 11 35 35 H 1.09000 * 109.46922 * 299.99940 * 14 13 12 36 36 H 1.08996 * 109.46726 * 60.00153 * 14 13 12 37 37 H 0.96999 * 119.99483 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6620 2.0813 -1.2209 6 6 3.5419 1.4443 0.1240 7 6 4.3291 1.5148 -1.0094 8 6 5.7069 1.5160 -0.8964 9 6 6.3009 1.4472 0.3506 10 6 5.5183 1.3766 1.4865 11 6 4.1352 1.3747 1.3759 12 8 3.3631 1.3058 2.4921 13 6 4.0423 1.2371 3.7475 14 6 3.0156 1.1664 4.8797 15 6 3.7320 1.0933 6.2035 16 1 4.8115 1.0973 6.2343 17 6 3.0090 1.0224 7.3754 18 7 1.6944 1.0181 7.3379 19 14 3.8969 0.9310 9.0164 20 1 5.3640 0.9510 8.7872 21 1 3.5113 2.0955 9.8534 22 1 3.5214 -0.3254 9.7131 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0143 1.6542 -2.0138 29 1 3.8676 1.5690 -1.9843 30 1 6.3205 1.5715 -1.7834 31 1 7.3775 1.4442 0.4359 32 1 5.9827 1.3225 2.4601 33 1 4.6722 0.3477 3.7716 34 1 4.6621 2.1247 3.8744 35 1 2.3862 2.0560 4.8553 36 1 2.3956 0.2790 4.7529 37 1 1.1860 0.9678 8.1624 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035625944.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:54 Heat of formation + Delta-G solvation = -107.245043 kcal Electronic energy + Delta-G solvation = -18071.200218 eV Core-core repulsion = 15198.121053 eV Total energy + Delta-G solvation = -2873.079165 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.35252 -39.10008 -37.80028 -35.49004 -33.83528 -32.56878 -31.84358 -30.59811 -27.07728 -26.90525 -24.05127 -23.16728 -22.48951 -21.73325 -19.47398 -18.38225 -17.53088 -17.30022 -16.96607 -16.54330 -16.39183 -15.87038 -15.43806 -15.03881 -14.47253 -14.43437 -14.33101 -13.93844 -13.43362 -13.20499 -13.08419 -12.91809 -12.69107 -12.62425 -12.47748 -12.15072 -11.88900 -11.82065 -11.62581 -11.60170 -11.40800 -10.96212 -10.64360 -9.80560 -9.06694 -8.28343 -6.42130 0.34463 0.50966 1.39853 1.40711 1.54113 2.25410 2.49873 2.78711 3.06267 3.47278 3.60437 3.92824 4.04019 4.11094 4.13251 4.24103 4.25723 4.40253 4.46788 4.59922 4.65829 4.71303 4.79228 4.85695 5.00377 5.13119 5.20880 5.30406 5.35903 5.44807 5.45342 5.52806 5.57584 5.66877 5.91707 6.06271 6.52213 6.72721 6.82848 7.28255 8.84935 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.005156 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.309088 B = 5429.456021 C = 6432.021774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.163 3.837 4 H 0.077 0.923 5 O -0.561 6.561 6 C -0.169 4.169 7 C -0.076 4.076 8 C -0.157 4.157 9 C -0.083 4.083 10 C -0.225 4.225 11 C 0.111 3.889 12 O -0.335 6.335 13 C 0.085 3.915 14 C 0.030 3.970 15 C -0.546 4.546 16 H 0.070 0.930 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.975 3.025 20 H -0.258 1.258 21 H -0.277 1.277 22 H -0.276 1.276 23 H 0.064 0.936 24 H 0.037 0.963 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.387 0.613 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.149 0.851 32 H 0.125 0.875 33 H 0.059 0.941 34 H 0.056 0.944 35 H -0.003 1.003 36 H -0.001 1.001 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.407 -1.251 -18.604 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.104 3.896 4 H 0.095 0.905 5 O -0.369 6.369 6 C -0.170 4.170 7 C -0.094 4.094 8 C -0.174 4.174 9 C -0.101 4.101 10 C -0.244 4.244 11 C 0.065 3.935 12 O -0.250 6.250 13 C 0.011 3.989 14 C -0.007 4.007 15 C -0.584 4.584 16 H 0.088 0.912 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.799 3.201 20 H -0.182 1.182 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.083 0.917 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.237 0.763 29 H 0.177 0.823 30 H 0.175 0.825 31 H 0.167 0.833 32 H 0.143 0.857 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.015 0.985 36 H 0.017 0.983 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.734 -0.867 -18.066 18.974 hybrid contribution 0.462 -0.382 1.173 1.318 sum 6.196 -1.250 -16.893 18.036 Atomic orbital electron populations 1.21693 0.94620 1.02044 1.01914 1.22089 0.97240 0.95732 1.02756 1.20367 0.88532 0.93541 0.87141 0.90524 1.86599 1.76825 1.57603 1.15842 1.20121 0.97494 1.08289 0.91108 1.21063 0.93863 0.96876 0.97557 1.21393 0.94700 1.03148 0.98207 1.21310 1.00778 0.96322 0.91646 1.21502 0.92426 1.09295 1.01188 1.19313 0.90674 0.96591 0.86881 1.86077 1.36961 1.87863 1.14073 1.22841 0.95916 1.00228 0.79904 1.18942 0.94255 0.95912 0.91580 1.21418 0.93804 1.51930 0.91229 0.91221 1.26029 0.95620 0.94143 1.03797 1.70127 1.07089 1.50537 1.29204 0.85245 0.79046 0.77914 0.77902 1.18164 1.20242 1.20155 0.91683 0.94412 0.91169 0.89482 0.93045 0.76260 0.82311 0.82472 0.83317 0.85673 0.92268 0.92533 0.98493 0.98275 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.81 71.98 0.71 -2.86 16 2 C -0.14 -3.65 5.59 30.59 0.17 -3.48 16 3 C 0.16 4.71 2.93 29.85 0.09 4.80 16 4 H 0.08 2.76 7.69 -2.39 -0.02 2.75 16 5 O -0.56 -13.38 12.52 -148.98 -1.87 -15.24 16 6 C -0.17 -4.93 5.08 -19.77 -0.10 -5.04 16 7 C -0.08 -1.62 9.30 22.25 0.21 -1.41 16 8 C -0.16 -3.05 10.04 22.28 0.22 -2.83 16 9 C -0.08 -1.90 10.04 22.26 0.22 -1.68 16 10 C -0.23 -6.88 9.04 22.37 0.20 -6.68 16 11 C 0.11 3.89 6.66 22.51 0.15 4.04 16 12 O -0.34 -14.23 9.27 -92.39 -0.86 -15.09 16 13 C 0.09 3.79 4.68 71.98 0.34 4.12 16 14 C 0.03 1.67 5.34 29.85 0.16 1.83 16 15 C -0.55 -31.01 9.11 25.60 0.23 -30.78 16 16 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 17 C 0.00 0.16 5.46 84.65 0.46 0.62 16 18 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 19 Si 0.98 43.64 29.54 68.60 2.03 45.67 16 20 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.52 7.82 -2.38 -0.02 1.51 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.39 5.45 7.33 -74.05 -0.54 4.90 16 29 H 0.16 2.13 6.41 -2.91 -0.02 2.11 16 30 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.13 3.84 6.30 -2.91 -0.02 3.82 16 33 H 0.06 2.47 7.66 -2.38 -0.02 2.45 16 34 H 0.06 2.39 7.66 -2.39 -0.02 2.37 16 35 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -68.74 310.92 3.16 -65.58 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.51 Total: 14.99 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 3.06 Total: -39.34 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.28 Total: -56.56 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -2.72 Total: -30.33 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -68.74 3.16 -65.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035625944.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.670 kcal (2) G-P(sol) polarization free energy of solvation -68.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds