Wall clock time and date at job start Mon Mar 30 2020 06:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47056 * 2 1 4 4 H 1.09000 * 109.47521 * 304.99605 * 3 2 1 5 5 O 1.42901 * 109.47120 * 64.99878 * 3 2 1 6 6 C 1.50707 * 109.47205 * 184.99890 * 3 2 1 7 7 C 1.38163 * 120.02715 * 264.98165 * 6 3 2 8 8 C 1.38243 * 120.05438 * 180.02562 * 7 6 3 9 9 C 1.38289 * 120.11362 * 359.97438 * 8 7 6 10 10 C 1.38125 * 120.05159 * 0.02562 * 9 8 7 11 11 C 1.38708 * 120.02785 * 85.00071 * 6 3 2 12 12 O 1.35899 * 120.05461 * 359.95420 * 11 6 3 13 13 C 1.42903 * 116.99930 * 180.02562 * 12 11 6 14 14 C 1.53002 * 109.47006 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46600 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00417 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99642 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99928 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00014 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47355 * 119.99423 * 19 17 15 22 22 H 1.48501 * 109.47194 * 239.99540 * 19 17 15 23 23 H 1.09006 * 109.47172 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47256 * 300.00080 * 1 2 3 25 25 H 1.09009 * 109.46799 * 60.00191 * 1 2 3 26 26 H 1.08997 * 109.46851 * 240.00129 * 2 1 3 27 27 H 1.09001 * 109.46646 * 120.00062 * 2 1 3 28 28 H 0.96697 * 114.00051 * 60.00516 * 5 3 2 29 29 H 1.08001 * 119.97059 * 359.97438 * 7 6 3 30 30 H 1.08004 * 119.94070 * 180.02562 * 8 7 6 31 31 H 1.07993 * 119.96940 * 180.28495 * 9 8 7 32 32 H 1.08000 * 120.02328 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.47294 * 300.00489 * 13 12 11 34 34 H 1.08995 * 109.47056 * 60.00501 * 13 12 11 35 35 H 1.08993 * 109.47487 * 299.99875 * 14 13 12 36 36 H 1.09003 * 109.46669 * 60.00618 * 14 13 12 37 37 H 0.96997 * 120.00143 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6619 2.0813 1.2210 6 6 3.5420 1.4443 -0.1238 7 6 4.3290 1.5151 1.0095 8 6 5.7068 1.5174 0.8966 9 6 6.3009 1.4483 -0.3503 10 6 5.5184 1.3773 -1.4863 11 6 4.1353 1.3753 -1.3757 12 8 3.3633 1.3050 -2.4919 13 6 4.0426 1.2358 -3.7472 14 6 3.0159 1.1636 -4.8793 15 6 3.7324 1.0900 -6.2031 16 1 4.8119 1.0938 -6.2339 17 6 3.0096 1.0177 -7.3751 18 7 1.6950 1.0125 -7.3376 19 14 3.8975 0.9257 -9.0159 20 1 5.3646 0.9469 -8.7867 21 1 3.5230 -0.3315 -9.7117 22 1 3.5110 2.0892 -9.8538 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0141 1.6543 2.0139 29 1 3.8674 1.5696 1.9844 30 1 6.3203 1.5724 1.7837 31 1 7.3774 1.4455 -0.4356 32 1 5.9828 1.3238 -2.4599 33 1 4.6618 2.1237 -3.8747 34 1 4.6729 0.3469 -3.7707 35 1 2.3965 0.2759 -4.7521 36 1 2.3859 2.0528 -4.8557 37 1 1.1865 0.9613 -8.1620 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035625946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:57 Heat of formation + Delta-G solvation = -88.081899 kcal Electronic energy + Delta-G solvation = -18070.456173 eV Core-core repulsion = 15198.207984 eV Total energy + Delta-G solvation = -2872.248189 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.14799 -37.82785 -36.66808 -33.43426 -32.75999 -31.09647 -30.45844 -29.26359 -25.85669 -25.13923 -22.56348 -22.02652 -21.17065 -20.35419 -18.12543 -16.70891 -16.14887 -15.98675 -15.42087 -15.30795 -14.79410 -14.52518 -14.38685 -13.92761 -13.13356 -13.02692 -12.76415 -12.35417 -12.18133 -12.04961 -11.67189 -11.47199 -11.39442 -10.95592 -10.93231 -10.82842 -10.71557 -10.56032 -9.94975 -9.88132 -9.68273 -9.31396 -8.74660 -8.47834 -7.85991 -6.12945 -4.17656 1.40386 1.61729 3.24835 3.32043 3.35397 3.76757 3.85786 4.38865 4.47660 4.68461 4.95139 5.06779 5.18135 5.19671 5.23725 5.35952 5.48758 5.61346 5.72906 5.85096 5.88920 5.98984 6.00269 6.02207 6.17303 6.25963 6.38153 6.46526 6.58626 6.59908 6.67436 6.93293 7.46550 7.60469 7.63966 7.77269 7.99935 8.20709 8.88028 9.46942 10.98611 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.005156 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.328276 B = 5429.151534 C = 6431.924833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.157 3.843 4 H 0.114 0.886 5 O -0.557 6.557 6 C -0.159 4.159 7 C -0.079 4.079 8 C -0.169 4.169 9 C -0.081 4.081 10 C -0.210 4.210 11 C 0.153 3.847 12 O -0.313 6.313 13 C 0.065 3.935 14 C 0.026 3.974 15 C -0.527 4.527 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.367 0.633 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 -1.033 16.671 17.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C 0.098 3.902 4 H 0.132 0.868 5 O -0.362 6.362 6 C -0.160 4.160 7 C -0.097 4.097 8 C -0.187 4.187 9 C -0.099 4.099 10 C -0.229 4.229 11 C 0.105 3.895 12 O -0.226 6.226 13 C -0.009 4.009 14 C -0.011 4.011 15 C -0.565 4.565 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.214 0.786 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.149 0.851 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.554 -0.647 16.093 16.493 hybrid contribution 1.128 -0.471 -0.766 1.443 sum 4.682 -1.118 15.327 16.065 Atomic orbital electron populations 1.21706 0.95060 1.01350 1.02381 1.22150 0.96877 0.96542 1.02823 1.20679 0.88678 0.93426 0.87422 0.86801 1.86632 1.76624 1.57369 1.15572 1.19899 0.97048 1.08064 0.91038 1.20597 0.93501 0.98517 0.97069 1.20884 0.94540 1.05980 0.97345 1.20924 0.99438 0.97465 0.92105 1.21380 0.92901 1.08488 1.00136 1.18929 0.89795 0.93486 0.87252 1.86155 1.36133 1.86537 1.13758 1.23354 0.97792 0.99630 0.80135 1.19125 0.93798 0.98836 0.89364 1.21002 0.93095 1.52020 0.90381 0.92341 1.24986 0.94863 0.94888 0.99406 1.69981 1.05208 1.49618 1.27871 0.86437 0.79813 0.77764 0.83415 1.19650 1.20818 1.20813 0.92958 0.92449 0.92247 0.90401 0.92167 0.78611 0.86009 0.86338 0.86163 0.85082 0.93108 0.93103 0.95392 0.95376 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.81 37.16 0.36 -1.44 16 2 C -0.15 -1.90 5.59 -26.73 -0.15 -2.05 16 3 C 0.16 2.24 2.93 -27.88 -0.08 2.16 16 4 H 0.11 1.90 7.69 -51.93 -0.40 1.50 16 5 O -0.56 -7.11 12.53 -35.23 -0.44 -7.56 16 6 C -0.16 -2.38 5.08 -104.47 -0.53 -2.91 16 7 C -0.08 -0.97 9.30 -39.61 -0.37 -1.34 16 8 C -0.17 -2.01 10.04 -39.56 -0.40 -2.41 16 9 C -0.08 -1.05 10.04 -39.60 -0.40 -1.45 16 10 C -0.21 -3.26 9.04 -39.43 -0.36 -3.62 16 11 C 0.15 2.62 6.66 -39.22 -0.26 2.36 16 12 O -0.31 -6.22 9.27 -19.42 -0.18 -6.40 16 13 C 0.06 1.36 4.68 37.16 0.17 1.54 16 14 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 15 C -0.53 -14.55 9.11 -34.44 -0.31 -14.86 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 19 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.65 7.82 -51.93 -0.41 0.25 16 25 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.37 3.21 7.33 45.56 0.33 3.55 16 29 H 0.12 1.13 6.41 -52.49 -0.34 0.79 16 30 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 31 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.13 2.00 6.30 -52.49 -0.33 1.67 16 33 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 34 H 0.05 1.02 7.66 -51.93 -0.40 0.62 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -30.34 310.92 -7.64 -37.98 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.86 Total: 2.58 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -2.56 Total: -21.90 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.74 Total: -25.51 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.62 Total: -13.95 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.34 -7.64 -37.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035625946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.103 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds