Wall clock time and date at job start Mon Mar 30 2020 06:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47056 * 2 1 4 4 H 1.09000 * 109.47521 * 304.99605 * 3 2 1 5 5 O 1.42901 * 109.47120 * 64.99878 * 3 2 1 6 6 C 1.50707 * 109.47205 * 184.99890 * 3 2 1 7 7 C 1.38163 * 120.02715 * 264.98165 * 6 3 2 8 8 C 1.38243 * 120.05438 * 180.02562 * 7 6 3 9 9 C 1.38289 * 120.11362 * 359.97438 * 8 7 6 10 10 C 1.38125 * 120.05159 * 0.02562 * 9 8 7 11 11 C 1.38708 * 120.02785 * 85.00071 * 6 3 2 12 12 O 1.35899 * 120.05461 * 359.95420 * 11 6 3 13 13 C 1.42903 * 116.99930 * 180.02562 * 12 11 6 14 14 C 1.53002 * 109.47006 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46600 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00417 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99642 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99928 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00014 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47111 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47355 * 119.99423 * 19 17 15 22 22 H 1.48501 * 109.47194 * 239.99540 * 19 17 15 23 23 H 1.09006 * 109.47172 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47256 * 300.00080 * 1 2 3 25 25 H 1.09009 * 109.46799 * 60.00191 * 1 2 3 26 26 H 1.08997 * 109.46851 * 240.00129 * 2 1 3 27 27 H 1.09001 * 109.46646 * 120.00062 * 2 1 3 28 28 H 0.96697 * 114.00051 * 60.00516 * 5 3 2 29 29 H 1.08001 * 119.97059 * 359.97438 * 7 6 3 30 30 H 1.08004 * 119.94070 * 180.02562 * 8 7 6 31 31 H 1.07993 * 119.96940 * 180.28495 * 9 8 7 32 32 H 1.08000 * 120.02328 * 179.97438 * 10 9 8 33 33 H 1.08998 * 109.47294 * 300.00489 * 13 12 11 34 34 H 1.08995 * 109.47056 * 60.00501 * 13 12 11 35 35 H 1.08993 * 109.47487 * 299.99875 * 14 13 12 36 36 H 1.09003 * 109.46669 * 60.00618 * 14 13 12 37 37 H 0.96997 * 120.00143 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 8 1.6619 2.0813 1.2210 6 6 3.5420 1.4443 -0.1238 7 6 4.3290 1.5151 1.0095 8 6 5.7068 1.5174 0.8966 9 6 6.3009 1.4483 -0.3503 10 6 5.5184 1.3773 -1.4863 11 6 4.1353 1.3753 -1.3757 12 8 3.3633 1.3050 -2.4919 13 6 4.0426 1.2358 -3.7472 14 6 3.0159 1.1636 -4.8793 15 6 3.7324 1.0900 -6.2031 16 1 4.8119 1.0938 -6.2339 17 6 3.0096 1.0177 -7.3751 18 7 1.6950 1.0125 -7.3376 19 14 3.8975 0.9257 -9.0159 20 1 5.3646 0.9469 -8.7867 21 1 3.5230 -0.3315 -9.7117 22 1 3.5110 2.0892 -9.8538 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0141 1.6543 2.0139 29 1 3.8674 1.5696 1.9844 30 1 6.3203 1.5724 1.7837 31 1 7.3774 1.4455 -0.4356 32 1 5.9828 1.3238 -2.4599 33 1 4.6618 2.1237 -3.8747 34 1 4.6729 0.3469 -3.7707 35 1 2.3965 0.2759 -4.7521 36 1 2.3859 2.0528 -4.8557 37 1 1.1865 0.9613 -8.1620 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035625946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:56 Heat of formation + Delta-G solvation = -107.234670 kcal Electronic energy + Delta-G solvation = -18071.286700 eV Core-core repulsion = 15198.207984 eV Total energy + Delta-G solvation = -2873.078715 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.35285 -39.09959 -37.80033 -35.48964 -33.83551 -32.56901 -31.84376 -30.59813 -27.07695 -26.90550 -24.05132 -23.16712 -22.48960 -21.73322 -19.47404 -18.38247 -17.53067 -17.30012 -16.96617 -16.54351 -16.39171 -15.87042 -15.43803 -15.03893 -14.47256 -14.43435 -14.33090 -13.93816 -13.43384 -13.20490 -13.08391 -12.91837 -12.69126 -12.62377 -12.47724 -12.15101 -11.88907 -11.82091 -11.62602 -11.60156 -11.40784 -10.96234 -10.64361 -9.80573 -9.06727 -8.28348 -6.42109 0.34466 0.50978 1.39859 1.40701 1.54116 2.25437 2.49896 2.78728 3.06256 3.47238 3.60408 3.92819 4.04028 4.11106 4.13250 4.24137 4.25726 4.40261 4.46793 4.59918 4.65839 4.71307 4.79198 4.85723 5.00355 5.13141 5.20882 5.30412 5.35903 5.44819 5.45345 5.52800 5.57586 5.66868 5.91707 6.06267 6.52199 6.72724 6.82851 7.28223 8.84952 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.005156 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.328276 B = 5429.151534 C = 6431.924833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.163 3.837 4 H 0.077 0.923 5 O -0.561 6.561 6 C -0.169 4.169 7 C -0.076 4.076 8 C -0.157 4.157 9 C -0.083 4.083 10 C -0.225 4.225 11 C 0.111 3.889 12 O -0.335 6.335 13 C 0.085 3.915 14 C 0.030 3.970 15 C -0.546 4.546 16 H 0.070 0.930 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.976 3.024 20 H -0.258 1.258 21 H -0.276 1.276 22 H -0.277 1.277 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.387 0.613 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.149 0.851 32 H 0.125 0.875 33 H 0.056 0.944 34 H 0.059 0.941 35 H -0.001 1.001 36 H -0.003 1.003 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.406 -1.236 18.603 19.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.104 3.896 4 H 0.095 0.905 5 O -0.369 6.369 6 C -0.170 4.170 7 C -0.094 4.094 8 C -0.174 4.174 9 C -0.101 4.101 10 C -0.244 4.244 11 C 0.065 3.935 12 O -0.250 6.250 13 C 0.011 3.989 14 C -0.007 4.007 15 C -0.584 4.584 16 H 0.088 0.912 17 C -0.196 4.196 18 N -0.570 5.570 19 Si 0.799 3.201 20 H -0.182 1.182 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.237 0.763 29 H 0.177 0.823 30 H 0.175 0.825 31 H 0.167 0.833 32 H 0.143 0.857 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.017 0.983 36 H 0.015 0.985 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.732 -0.853 18.065 18.972 hybrid contribution 0.462 -0.383 -1.173 1.318 sum 6.194 -1.236 16.892 18.034 Atomic orbital electron populations 1.21694 0.94621 1.02044 1.01913 1.22087 0.97239 0.95733 1.02756 1.20370 0.88531 0.93541 0.87139 0.90521 1.86600 1.76826 1.57604 1.15842 1.20120 0.97494 1.08289 0.91107 1.21062 0.93864 0.96874 0.97558 1.21393 0.94699 1.03147 0.98209 1.21308 1.00778 0.96321 0.91647 1.21501 0.92427 1.09295 1.01188 1.19312 0.90676 0.96592 0.86882 1.86078 1.36960 1.87856 1.14080 1.22840 0.95916 1.00227 0.79907 1.18943 0.94255 0.95911 0.91580 1.21420 0.93802 1.51929 0.91234 0.91223 1.26029 0.95622 0.94145 1.03801 1.70124 1.07092 1.50527 1.29213 0.85243 0.79045 0.77913 0.77896 1.18163 1.20158 1.20242 0.91684 0.91163 0.94420 0.93044 0.89482 0.76263 0.82311 0.82470 0.83318 0.85672 0.92531 0.92270 0.98275 0.98493 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.81 71.98 0.71 -2.86 16 2 C -0.14 -3.65 5.59 30.59 0.17 -3.48 16 3 C 0.16 4.71 2.93 29.85 0.09 4.80 16 4 H 0.08 2.77 7.69 -2.39 -0.02 2.75 16 5 O -0.56 -13.38 12.53 -148.98 -1.87 -15.24 16 6 C -0.17 -4.93 5.08 -19.77 -0.10 -5.03 16 7 C -0.08 -1.62 9.30 22.25 0.21 -1.41 16 8 C -0.16 -3.05 10.04 22.28 0.22 -2.83 16 9 C -0.08 -1.90 10.04 22.25 0.22 -1.68 16 10 C -0.23 -6.88 9.04 22.36 0.20 -6.68 16 11 C 0.11 3.89 6.66 22.50 0.15 4.04 16 12 O -0.34 -14.23 9.27 -92.41 -0.86 -15.09 16 13 C 0.09 3.79 4.68 71.98 0.34 4.12 16 14 C 0.03 1.67 5.34 29.85 0.16 1.83 16 15 C -0.55 -31.01 9.11 25.60 0.23 -30.78 16 16 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 17 C 0.00 0.15 5.46 84.66 0.46 0.61 16 18 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 19 Si 0.98 43.65 29.54 68.60 2.03 45.67 16 20 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.07 1.53 7.82 -2.39 -0.02 1.51 16 25 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.39 5.45 7.33 -74.06 -0.54 4.90 16 29 H 0.16 2.13 6.41 -2.91 -0.02 2.11 16 30 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.13 3.84 6.30 -2.91 -0.02 3.82 16 33 H 0.06 2.39 7.66 -2.39 -0.02 2.37 16 34 H 0.06 2.47 7.66 -2.39 -0.02 2.45 16 35 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -68.74 310.92 3.16 -65.57 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.51 Total: 14.99 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 3.06 Total: -39.35 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.28 Total: -56.55 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -2.72 Total: -30.33 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -68.74 3.16 -65.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035625946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.660 kcal (2) G-P(sol) polarization free energy of solvation -68.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds