Wall clock time and date at job start Mon Mar 30 2020 06:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.46406 * 2 1 4 4 C 1.35904 * 116.99486 * 180.02562 * 3 2 1 5 5 C 1.38753 * 120.05553 * 0.02562 * 4 3 2 6 6 C 1.38122 * 119.94048 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.06074 * 359.75251 * 6 5 4 8 8 C 1.38251 * 120.10653 * 0.50640 * 7 6 5 9 9 C 1.50697 * 119.96953 * 179.76954 * 8 7 6 10 10 C 1.53005 * 109.46774 * 269.72475 * 9 8 7 11 11 C 1.53000 * 109.46867 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47398 * 54.99853 * 11 10 9 13 13 O 1.42903 * 109.46726 * 294.99609 * 11 10 9 14 14 C 1.50699 * 109.47083 * 174.99799 * 11 10 9 15 15 H 1.08000 * 119.99792 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99902 * 179.97438 * 14 11 10 17 17 N 1.31522 * 119.99730 * 179.97438 * 16 14 11 18 18 Si 1.86801 * 120.00223 * 0.02562 * 16 14 11 19 19 H 1.48501 * 109.46854 * 89.99533 * 18 16 14 20 20 H 1.48495 * 109.46995 * 209.99565 * 18 16 14 21 21 H 1.48503 * 109.46814 * 329.99605 * 18 16 14 22 22 C 1.38160 * 120.05231 * 359.49097 * 8 7 6 23 23 H 1.09004 * 109.47626 * 60.00323 * 1 2 3 24 24 H 1.09006 * 109.46751 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47598 * 299.99800 * 1 2 3 26 26 H 1.08999 * 109.47598 * 240.00199 * 2 1 3 27 27 H 1.08997 * 109.46993 * 119.99735 * 2 1 3 28 28 H 1.08002 * 120.02979 * 359.96295 * 5 4 3 29 29 H 1.08007 * 119.97040 * 180.02562 * 6 5 4 30 30 H 1.07998 * 119.94569 * 180.27820 * 7 6 5 31 31 H 1.09000 * 109.46866 * 149.72452 * 9 8 7 32 32 H 1.09001 * 109.47348 * 29.72373 * 9 8 7 33 33 H 1.08990 * 109.47398 * 60.00357 * 10 9 8 34 34 H 1.09001 * 109.47099 * 300.00050 * 10 9 8 35 35 H 0.96700 * 114.00234 * 300.00043 * 13 11 10 36 36 H 0.96999 * 119.99784 * 180.02562 * 17 16 14 37 37 H 1.08010 * 120.02649 * 180.22889 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 -0.0005 5 6 4.1998 0.4260 -0.0016 6 6 5.5688 0.6098 -0.0027 7 6 6.0961 1.8882 -0.0079 8 6 5.2549 2.9853 -0.0014 9 6 5.8329 4.3770 -0.0019 10 6 6.0296 4.8479 1.4405 11 6 6.6158 6.2612 1.4401 12 1 5.9770 6.9194 0.8513 13 8 7.9257 6.2333 0.8696 14 6 6.6952 6.7725 2.8555 15 1 6.3606 6.1517 3.6734 16 6 7.1950 8.0328 3.1061 17 7 7.2638 8.4792 4.3414 18 14 7.7732 9.1068 1.6913 19 1 6.6380 9.9261 1.1959 20 1 8.8613 10.0013 2.1614 21 1 8.2797 8.2466 0.5918 22 6 3.8849 2.8068 -0.0004 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7885 -0.5727 -0.0014 29 1 6.2280 -0.2458 -0.0039 30 1 7.1667 2.0297 -0.0133 31 1 5.1499 5.0539 -0.5152 32 1 6.7938 4.3713 -0.5165 33 1 6.7126 4.1711 1.9538 34 1 5.0687 4.8537 1.9551 35 1 8.5492 5.6659 1.3434 36 1 7.6151 9.3660 4.5177 37 1 3.2281 3.6643 0.0009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:34 Heat of formation + Delta-G solvation = -102.639801 kcal Electronic energy + Delta-G solvation = -17623.843562 eV Core-core repulsion = 14750.964095 eV Total energy + Delta-G solvation = -2872.879467 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.11654 -39.04257 -38.03259 -34.51661 -34.34934 -32.87763 -31.27804 -30.39206 -28.61149 -25.53846 -24.13691 -23.44582 -22.20350 -21.47536 -19.29958 -18.64433 -17.05501 -17.02898 -16.96179 -16.77477 -16.39785 -16.05372 -15.09990 -14.90661 -14.52265 -14.34184 -14.26160 -13.70444 -13.53245 -13.49367 -13.33513 -12.90629 -12.79893 -12.52997 -12.47822 -12.14186 -11.84304 -11.71754 -11.59558 -11.48491 -11.03676 -10.80025 -10.18447 -9.66814 -9.11493 -8.34179 -6.48857 0.38841 0.51941 1.41545 1.46302 1.76398 2.27249 2.45271 2.81962 3.03735 3.81507 3.89370 4.04034 4.05693 4.14499 4.15075 4.24418 4.37296 4.44877 4.48889 4.59017 4.64292 4.67204 4.86124 4.93384 5.02503 5.03334 5.13862 5.20225 5.36570 5.43548 5.51577 5.55184 5.58336 5.77945 5.89024 6.11743 6.50646 6.64080 7.21129 7.36899 8.80458 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.035034 B = 0.004098 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.032749 B = 6831.451032 C = 7205.839293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.338 6.338 4 C 0.118 3.882 5 C -0.219 4.219 6 C -0.077 4.077 7 C -0.165 4.165 8 C -0.044 4.044 9 C -0.071 4.071 10 C -0.112 4.112 11 C 0.199 3.801 12 H 0.052 0.948 13 O -0.581 6.581 14 C -0.567 4.567 15 H 0.031 0.969 16 C 0.023 3.977 17 N -0.944 5.944 18 Si 0.941 3.059 19 H -0.286 1.286 20 H -0.297 1.297 21 H -0.200 1.200 22 C -0.175 4.175 23 H 0.062 0.938 24 H 0.103 0.897 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.150 0.850 29 H 0.153 0.847 30 H 0.136 0.864 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.369 0.631 36 H 0.266 0.734 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 -19.666 -12.388 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.253 6.253 4 C 0.072 3.928 5 C -0.237 4.237 6 C -0.095 4.095 7 C -0.183 4.183 8 C -0.044 4.044 9 C -0.109 4.109 10 C -0.150 4.150 11 C 0.141 3.859 12 H 0.070 0.930 13 O -0.389 6.389 14 C -0.605 4.605 15 H 0.050 0.950 16 C -0.176 4.176 17 N -0.583 5.583 18 Si 0.765 3.235 19 H -0.212 1.212 20 H -0.224 1.224 21 H -0.122 1.122 22 C -0.193 4.193 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.167 0.833 29 H 0.171 0.829 30 H 0.153 0.847 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.217 0.783 36 H 0.075 0.925 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.121 -19.014 -12.716 24.272 hybrid contribution 0.301 0.430 0.743 0.910 sum -7.820 -18.584 -11.973 23.449 Atomic orbital electron populations 1.21817 0.91635 1.04227 1.03024 1.23072 0.96827 0.80741 1.02333 1.86060 1.18988 1.31513 1.88749 1.19101 0.82746 0.94287 0.96620 1.21471 0.94484 0.98367 1.09398 1.21271 0.94649 0.97592 0.96013 1.21240 1.00486 0.92197 1.04380 1.19871 0.92374 0.96192 0.95943 1.20570 1.01548 0.91772 0.96971 1.21907 1.00465 0.97030 0.95582 1.19610 0.82173 0.93260 0.90832 0.92975 1.86571 1.22979 1.71262 1.58038 1.21956 1.43448 1.01177 0.93905 0.95018 1.25964 0.94092 0.99315 0.98238 1.70106 1.46946 1.19242 1.22009 0.85953 0.77809 0.77766 0.81965 1.21209 1.22440 1.12195 1.20436 0.95109 0.95393 1.08404 0.91913 0.87868 0.92256 0.90770 0.91226 0.83252 0.82899 0.84659 0.91364 0.89626 0.92396 0.93420 0.78305 0.92505 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 71.98 0.74 -1.14 16 2 C 0.04 0.72 5.46 71.98 0.39 1.11 16 3 O -0.34 -8.61 10.14 -92.47 -0.94 -9.55 16 4 C 0.12 3.18 6.69 22.51 0.15 3.33 16 5 C -0.22 -4.80 9.04 22.37 0.20 -4.60 16 6 C -0.08 -1.65 10.04 22.25 0.22 -1.43 16 7 C -0.16 -4.19 9.70 22.29 0.22 -3.98 16 8 C -0.04 -1.29 5.13 -19.88 -0.10 -1.39 16 9 C -0.07 -2.27 5.24 29.85 0.16 -2.12 16 10 C -0.11 -4.34 4.81 30.60 0.15 -4.19 16 11 C 0.20 9.13 2.31 29.85 0.07 9.20 16 12 H 0.05 2.44 7.57 -2.39 -0.02 2.42 16 13 O -0.58 -24.67 9.68 -148.98 -1.44 -26.11 16 14 C -0.57 -32.46 9.34 25.60 0.24 -32.22 16 15 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 16 C 0.02 1.35 5.47 84.65 0.46 1.81 16 17 N -0.94 -59.75 13.96 21.45 0.30 -59.45 16 18 Si 0.94 45.51 26.99 68.60 1.85 47.36 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 21 H -0.20 -9.08 5.31 99.48 0.53 -8.55 16 22 C -0.17 -5.29 9.64 22.36 0.22 -5.07 16 23 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 24 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 27 H 0.07 0.98 7.66 -2.39 -0.02 0.97 16 28 H 0.15 2.35 6.30 -2.91 -0.02 2.33 16 29 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 30 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 31 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 32 H 0.09 2.58 7.76 -2.39 -0.02 2.56 16 33 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 35 H 0.37 13.77 9.04 -74.06 -0.67 13.10 16 36 H 0.27 15.81 8.31 -92.71 -0.77 15.03 16 37 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -69.79 308.70 3.09 -66.71 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.20 Total: 21.72 kcal Atomic # 6 Polarization: -43.80 SS G_CDS: 3.11 Total: -40.69 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.30 Total: -59.45 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -2.38 Total: -35.65 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.85 Total: 47.36 kcal Total: -69.79 3.09 -66.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.934 kcal (2) G-P(sol) polarization free energy of solvation -69.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds