Wall clock time and date at job start Mon Mar 30 2020 06:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42895 * 109.47178 * 2 1 4 4 C 1.35895 * 117.00192 * 180.02562 * 3 2 1 5 5 C 1.38763 * 120.05567 * 0.02562 * 4 3 2 6 6 C 1.38118 * 119.94274 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05596 * 359.74564 * 6 5 4 8 8 C 1.38237 * 120.11365 * 0.50767 * 7 6 5 9 9 C 1.50701 * 119.97429 * 179.76811 * 8 7 6 10 10 C 1.52997 * 109.47212 * 269.72520 * 9 8 7 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47563 * 305.00337 * 11 10 9 13 13 O 1.42902 * 109.47296 * 65.00043 * 11 10 9 14 14 C 1.50700 * 109.47798 * 185.00026 * 11 10 9 15 15 H 1.08007 * 119.99653 * 359.97438 * 14 11 10 16 16 C 1.37870 * 120.00569 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00211 * 179.97438 * 16 14 11 18 18 Si 1.86802 * 120.00049 * 0.02562 * 16 14 11 19 19 H 1.48492 * 109.47440 * 89.99537 * 18 16 14 20 20 H 1.48504 * 109.47039 * 209.99968 * 18 16 14 21 21 H 1.48502 * 109.46671 * 329.99509 * 18 16 14 22 22 C 1.38167 * 120.05532 * 359.48963 * 8 7 6 23 23 H 1.08997 * 109.47070 * 60.00419 * 1 2 3 24 24 H 1.09004 * 109.46808 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47165 * 300.00156 * 1 2 3 26 26 H 1.08999 * 109.47165 * 239.99843 * 2 1 3 27 27 H 1.09006 * 109.47078 * 119.99715 * 2 1 3 28 28 H 1.07995 * 120.02425 * 359.95428 * 5 4 3 29 29 H 1.07999 * 119.96877 * 180.02562 * 6 5 4 30 30 H 1.08003 * 119.94318 * 180.27469 * 7 6 5 31 31 H 1.09002 * 109.47060 * 29.72576 * 9 8 7 32 32 H 1.09001 * 109.47380 * 149.72663 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 35 35 H 0.96702 * 114.00205 * 59.99480 * 13 11 10 36 36 H 0.96996 * 119.99912 * 180.02562 * 17 16 14 37 37 H 1.07996 * 120.02925 * 180.22756 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.2000 0.4257 -0.0016 6 6 5.5689 0.6094 -0.0027 7 6 6.0962 1.8878 -0.0080 8 6 5.2552 2.9849 -0.0017 9 6 5.8332 4.3767 -0.0023 10 6 6.0299 4.8478 1.4400 11 6 6.6173 6.2605 1.4395 12 1 7.5337 6.2728 0.8494 13 8 5.6724 7.1691 0.8706 14 6 6.9255 6.6771 2.8546 15 1 6.7223 6.0018 3.6727 16 6 7.4669 7.9200 3.1050 17 7 7.7353 8.2837 4.3401 18 14 7.8177 9.0883 1.6903 19 1 6.6232 9.9337 1.4385 20 1 8.9728 9.9544 2.0383 21 1 8.1363 8.3053 0.4693 22 6 3.8851 2.8066 -0.0007 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 3.7886 -0.5728 -0.0012 29 1 6.2280 -0.2461 -0.0039 30 1 7.1669 2.0293 -0.0134 31 1 6.7941 4.3708 -0.5169 32 1 5.1502 5.0536 -0.5156 33 1 5.0691 4.8537 1.9546 34 1 6.7128 4.1710 1.9534 35 1 4.8310 7.2101 1.3455 36 1 8.1158 9.1584 4.5163 37 1 3.2284 3.6640 0.0006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:37 Heat of formation + Delta-G solvation = -84.597498 kcal Electronic energy + Delta-G solvation = -17634.792475 eV Core-core repulsion = 14762.695381 eV Total energy + Delta-G solvation = -2872.097094 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14823 -37.92148 -36.40467 -33.14868 -32.23064 -32.14684 -29.97956 -29.28644 -26.90502 -24.26352 -23.01564 -22.43331 -20.68932 -20.18691 -17.85636 -17.02971 -16.24058 -16.06312 -15.90803 -14.88481 -14.71739 -14.33691 -13.97963 -13.50745 -13.44776 -13.10078 -12.87825 -12.75606 -12.33317 -12.19215 -11.90254 -11.55199 -11.52802 -11.30826 -10.89210 -10.83464 -10.72421 -10.36932 -10.15348 -9.73837 -9.13238 -8.76835 -8.63117 -8.34036 -8.08676 -6.10272 -4.21564 1.42749 1.54338 3.10631 3.46664 3.50151 3.62959 3.85883 4.52505 4.66849 4.68355 4.86409 4.94483 4.98863 5.16865 5.20013 5.24753 5.45394 5.51879 5.52874 5.61066 5.74910 5.78732 5.83171 6.04759 6.11713 6.27902 6.35870 6.44407 6.51574 6.60084 6.83485 6.87892 7.01436 7.42129 7.43838 7.62545 8.31962 8.85520 9.03944 9.53739 11.00378 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.035899 B = 0.004080 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.770168 B = 6860.708501 C = 7112.232992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.128 3.872 5 C -0.223 4.223 6 C -0.080 4.080 7 C -0.156 4.156 8 C -0.027 4.027 9 C -0.084 4.084 10 C -0.124 4.124 11 C 0.189 3.811 12 H 0.060 0.940 13 O -0.589 6.589 14 C -0.561 4.561 15 H 0.073 0.927 16 C 0.079 3.921 17 N -0.895 5.895 18 Si 0.916 3.084 19 H -0.279 1.279 20 H -0.306 1.306 21 H -0.268 1.268 22 C -0.151 4.151 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.361 0.639 36 H 0.265 0.735 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.954 -16.995 -10.195 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.083 3.917 5 C -0.241 4.241 6 C -0.098 4.098 7 C -0.175 4.175 8 C -0.027 4.027 9 C -0.121 4.121 10 C -0.161 4.161 11 C 0.132 3.868 12 H 0.078 0.922 13 O -0.395 6.395 14 C -0.598 4.598 15 H 0.091 0.909 16 C -0.125 4.125 17 N -0.532 5.532 18 Si 0.746 3.254 19 H -0.205 1.205 20 H -0.235 1.235 21 H -0.193 1.193 22 C -0.169 4.169 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.208 0.792 36 H 0.074 0.926 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.561 -16.644 -10.509 21.883 hybrid contribution -0.107 0.159 -0.040 0.196 sum -9.668 -16.485 -10.549 21.829 Atomic orbital electron populations 1.21775 0.92882 1.02675 1.03599 1.22734 0.95746 0.82321 1.01212 1.86065 1.19376 1.28923 1.88847 1.18965 0.81938 0.94188 0.96605 1.21117 0.94482 0.97602 1.10939 1.20881 0.94194 0.97180 0.97594 1.21021 0.99990 0.91951 1.04506 1.19970 0.92164 0.96427 0.94188 1.20760 1.00920 0.90906 0.99535 1.22120 1.01401 0.99384 0.93242 1.19958 0.88241 0.84466 0.94131 0.92248 1.86355 1.28230 1.66491 1.58435 1.21613 1.43745 1.02148 0.92294 0.90910 1.25068 0.93375 0.98180 0.95894 1.69969 1.42750 1.20949 1.19577 0.86216 0.76808 0.80108 0.82310 1.20481 1.23461 1.19293 1.20350 0.94889 0.94695 1.07007 0.91551 0.90528 0.91441 0.92264 0.92167 0.86056 0.86108 0.85852 0.91219 0.90474 0.92428 0.91851 0.79242 0.92590 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.50 5.46 37.16 0.20 0.70 16 3 O -0.32 -4.14 10.14 -19.41 -0.20 -4.34 16 4 C 0.13 1.79 6.69 -39.21 -0.26 1.52 16 5 C -0.22 -2.74 9.04 -39.43 -0.36 -3.10 16 6 C -0.08 -0.99 10.04 -39.61 -0.40 -1.39 16 7 C -0.16 -2.17 9.70 -39.56 -0.38 -2.55 16 8 C -0.03 -0.42 5.13 -104.65 -0.54 -0.95 16 9 C -0.08 -1.38 5.24 -27.88 -0.15 -1.53 16 10 C -0.12 -2.41 4.81 -26.74 -0.13 -2.54 16 11 C 0.19 4.43 2.30 -27.89 -0.06 4.36 16 12 H 0.06 1.44 7.20 -51.93 -0.37 1.07 16 13 O -0.59 -13.31 10.57 -35.23 -0.37 -13.69 16 14 C -0.56 -15.75 9.34 -34.44 -0.32 -16.07 16 15 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 16 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 17 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 18 Si 0.92 23.47 26.18 -169.99 -4.45 19.02 16 19 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.31 -7.79 7.11 56.52 0.40 -7.39 16 21 H -0.27 -6.76 6.54 56.52 0.37 -6.39 16 22 C -0.15 -2.27 9.64 -39.43 -0.38 -2.65 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 27 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 28 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 29 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 31 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 32 H 0.08 1.27 7.77 -51.93 -0.40 0.86 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.36 7.22 9.04 45.56 0.41 7.63 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 309.63 15.07 4.67 4.67 Total: -1.00 -32.06 309.63 -6.95 -39.01 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.88 Total: 4.80 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -2.49 Total: -22.67 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.77 Total: -26.79 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.57 Total: -18.03 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -4.45 Total: 19.02 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.06 -6.95 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.585 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds