Wall clock time and date at job start Mon Mar 30 2020 06:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42895 * 109.47178 * 2 1 4 4 C 1.35895 * 117.00192 * 180.02562 * 3 2 1 5 5 C 1.38763 * 120.05567 * 0.02562 * 4 3 2 6 6 C 1.38118 * 119.94274 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05596 * 359.74564 * 6 5 4 8 8 C 1.38237 * 120.11365 * 0.50767 * 7 6 5 9 9 C 1.50701 * 119.97429 * 179.76811 * 8 7 6 10 10 C 1.52997 * 109.47212 * 269.72520 * 9 8 7 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47563 * 305.00337 * 11 10 9 13 13 O 1.42902 * 109.47296 * 65.00043 * 11 10 9 14 14 C 1.50700 * 109.47798 * 185.00026 * 11 10 9 15 15 H 1.08007 * 119.99653 * 359.97438 * 14 11 10 16 16 C 1.37870 * 120.00569 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00211 * 179.97438 * 16 14 11 18 18 Si 1.86802 * 120.00049 * 0.02562 * 16 14 11 19 19 H 1.48492 * 109.47440 * 89.99537 * 18 16 14 20 20 H 1.48504 * 109.47039 * 209.99968 * 18 16 14 21 21 H 1.48502 * 109.46671 * 329.99509 * 18 16 14 22 22 C 1.38167 * 120.05532 * 359.48963 * 8 7 6 23 23 H 1.08997 * 109.47070 * 60.00419 * 1 2 3 24 24 H 1.09004 * 109.46808 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47165 * 300.00156 * 1 2 3 26 26 H 1.08999 * 109.47165 * 239.99843 * 2 1 3 27 27 H 1.09006 * 109.47078 * 119.99715 * 2 1 3 28 28 H 1.07995 * 120.02425 * 359.95428 * 5 4 3 29 29 H 1.07999 * 119.96877 * 180.02562 * 6 5 4 30 30 H 1.08003 * 119.94318 * 180.27469 * 7 6 5 31 31 H 1.09002 * 109.47060 * 29.72576 * 9 8 7 32 32 H 1.09001 * 109.47380 * 149.72663 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 35 35 H 0.96702 * 114.00205 * 59.99480 * 13 11 10 36 36 H 0.96996 * 119.99912 * 180.02562 * 17 16 14 37 37 H 1.07996 * 120.02925 * 180.22756 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.2000 0.4257 -0.0016 6 6 5.5689 0.6094 -0.0027 7 6 6.0962 1.8878 -0.0080 8 6 5.2552 2.9849 -0.0017 9 6 5.8332 4.3767 -0.0023 10 6 6.0299 4.8478 1.4400 11 6 6.6173 6.2605 1.4395 12 1 7.5337 6.2728 0.8494 13 8 5.6724 7.1691 0.8706 14 6 6.9255 6.6771 2.8546 15 1 6.7223 6.0018 3.6727 16 6 7.4669 7.9200 3.1050 17 7 7.7353 8.2837 4.3401 18 14 7.8177 9.0883 1.6903 19 1 6.6232 9.9337 1.4385 20 1 8.9728 9.9544 2.0383 21 1 8.1363 8.3053 0.4693 22 6 3.8851 2.8066 -0.0007 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8901 28 1 3.7886 -0.5728 -0.0012 29 1 6.2280 -0.2461 -0.0039 30 1 7.1669 2.0293 -0.0134 31 1 6.7941 4.3708 -0.5169 32 1 5.1502 5.0536 -0.5156 33 1 5.0691 4.8537 1.9546 34 1 6.7128 4.1710 1.9534 35 1 4.8310 7.2101 1.3455 36 1 8.1158 9.1584 4.5163 37 1 3.2284 3.6640 0.0006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:37 Heat of formation + Delta-G solvation = -105.639148 kcal Electronic energy + Delta-G solvation = -17635.704910 eV Core-core repulsion = 14762.695381 eV Total energy + Delta-G solvation = -2873.009528 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.11875 -39.05395 -38.06671 -34.53189 -34.38494 -32.87585 -31.31905 -30.37935 -28.63700 -25.54637 -24.13766 -23.45502 -22.23671 -21.48326 -19.32834 -18.65135 -17.05911 -17.02674 -16.98211 -16.84454 -16.36857 -16.02615 -15.24063 -14.88331 -14.44147 -14.35497 -14.26402 -13.79396 -13.56974 -13.42189 -13.35193 -12.91592 -12.84610 -12.54361 -12.41239 -12.24826 -11.85421 -11.65326 -11.59535 -11.55719 -11.10979 -10.87497 -10.40426 -9.68653 -9.11931 -8.36001 -6.50903 0.38568 0.51484 1.41457 1.44810 1.59416 2.27207 2.38719 2.81520 2.98649 3.80595 3.88988 4.00498 4.06064 4.12102 4.16233 4.26436 4.37663 4.42389 4.49050 4.54333 4.63601 4.68838 4.87280 4.93936 5.00190 5.01679 5.15218 5.20530 5.36610 5.41458 5.49949 5.53260 5.57243 5.76727 5.88640 6.09843 6.50631 6.62271 7.16066 7.32292 8.78545 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.035899 B = 0.004080 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.770168 B = 6860.708501 C = 7112.232992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.337 6.337 4 C 0.118 3.882 5 C -0.219 4.219 6 C -0.078 4.078 7 C -0.168 4.168 8 C -0.044 4.044 9 C -0.072 4.072 10 C -0.111 4.111 11 C 0.195 3.805 12 H 0.057 0.943 13 O -0.589 6.589 14 C -0.565 4.565 15 H 0.036 0.964 16 C 0.026 3.974 17 N -0.940 5.940 18 Si 0.978 3.022 19 H -0.275 1.275 20 H -0.303 1.303 21 H -0.259 1.259 22 C -0.171 4.171 23 H 0.062 0.938 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.133 0.867 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.374 0.626 36 H 0.268 0.732 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.342 -18.626 -11.949 24.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.252 6.252 4 C 0.073 3.927 5 C -0.237 4.237 6 C -0.095 4.095 7 C -0.186 4.186 8 C -0.044 4.044 9 C -0.109 4.109 10 C -0.149 4.149 11 C 0.138 3.862 12 H 0.075 0.925 13 O -0.396 6.396 14 C -0.603 4.603 15 H 0.055 0.945 16 C -0.174 4.174 17 N -0.580 5.580 18 Si 0.805 3.195 19 H -0.201 1.201 20 H -0.231 1.231 21 H -0.183 1.183 22 C -0.190 4.190 23 H 0.081 0.919 24 H 0.121 0.879 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.168 0.832 29 H 0.170 0.830 30 H 0.151 0.849 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.222 0.778 36 H 0.077 0.923 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.969 -18.291 -12.268 24.175 hybrid contribution -0.074 0.549 0.564 0.790 sum -10.043 -17.743 -11.703 23.508 Atomic orbital electron populations 1.21815 0.91601 1.04217 1.03051 1.23072 0.96845 0.80757 1.02315 1.86053 1.18925 1.31485 1.88728 1.19101 0.82748 0.94282 0.96569 1.21471 0.94426 0.98431 1.09384 1.21254 0.94710 0.97513 0.96059 1.21242 1.00436 0.92360 1.04576 1.19855 0.92483 0.96043 0.95987 1.20568 1.01418 0.91931 0.97006 1.21901 1.00521 0.96919 0.95601 1.19793 0.88790 0.86559 0.91079 0.92481 1.86286 1.28753 1.66362 1.58201 1.21966 1.42972 1.01441 0.93883 0.94541 1.25905 0.93407 1.00003 0.98091 1.70086 1.44450 1.21778 1.21681 0.85226 0.76746 0.78062 0.79428 1.20060 1.23094 1.18291 1.20418 0.94963 0.95410 1.08199 0.91903 0.87910 0.92199 0.90823 0.91234 0.83246 0.82989 0.84923 0.90514 0.90587 0.92955 0.92531 0.77843 0.92320 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 71.98 0.74 -1.08 16 2 C 0.04 0.71 5.46 71.98 0.39 1.10 16 3 O -0.34 -8.41 10.14 -92.37 -0.94 -9.35 16 4 C 0.12 3.15 6.69 22.51 0.15 3.30 16 5 C -0.22 -4.80 9.04 22.37 0.20 -4.60 16 6 C -0.08 -1.68 10.04 22.25 0.22 -1.46 16 7 C -0.17 -4.36 9.70 22.28 0.22 -4.15 16 8 C -0.04 -1.29 5.13 -19.88 -0.10 -1.39 16 9 C -0.07 -2.31 5.24 29.85 0.16 -2.15 16 10 C -0.11 -4.33 4.81 30.59 0.15 -4.18 16 11 C 0.20 9.05 2.30 29.85 0.07 9.12 16 12 H 0.06 2.70 7.20 -2.39 -0.02 2.68 16 13 O -0.59 -25.82 10.57 -148.98 -1.58 -27.39 16 14 C -0.57 -32.25 9.34 25.60 0.24 -32.01 16 15 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 16 C 0.03 1.50 5.47 84.65 0.46 1.96 16 17 N -0.94 -59.03 13.96 21.44 0.30 -58.73 16 18 Si 0.98 48.12 26.18 68.60 1.80 49.92 16 19 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 21 H -0.26 -12.24 6.54 99.48 0.65 -11.59 16 22 C -0.17 -5.09 9.64 22.37 0.22 -4.88 16 23 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 27 H 0.07 0.97 7.66 -2.38 -0.02 0.95 16 28 H 0.15 2.35 6.30 -2.91 -0.02 2.33 16 29 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.08 2.33 8.08 -2.39 -0.02 2.31 16 32 H 0.08 2.43 7.77 -2.39 -0.02 2.41 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.37 14.54 9.04 -74.06 -0.67 13.87 16 36 H 0.27 15.73 8.31 -92.71 -0.77 14.95 16 37 H 0.12 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -68.85 309.63 3.02 -65.83 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.32 Total: 20.15 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 3.11 Total: -40.43 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.30 Total: -58.73 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -2.51 Total: -36.74 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 1.80 Total: 49.92 kcal Total: -68.85 3.02 -65.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.807 kcal (2) G-P(sol) polarization free energy of solvation -68.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds