Wall clock time and date at job start Mon Mar 30 2020 06:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42908 * 109.46961 * 2 1 4 4 C 1.35898 * 117.00181 * 179.97438 * 3 2 1 5 5 C 1.38731 * 120.05788 * 179.97438 * 4 3 2 6 6 C 1.38140 * 119.94182 * 180.02562 * 5 4 3 7 7 C 1.38260 * 120.06083 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.94604 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46467 * 90.00389 * 8 7 6 10 10 C 1.53001 * 109.46882 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47164 * 54.99936 * 10 9 8 12 12 O 1.42903 * 109.47171 * 294.99670 * 10 9 8 13 13 C 1.50707 * 109.47316 * 175.00354 * 10 9 8 14 14 H 1.07995 * 119.99310 * 359.97438 * 13 10 9 15 15 C 1.37872 * 119.99931 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00169 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99871 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.46796 * 60.00023 * 17 15 13 19 19 H 1.48494 * 109.47313 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47022 * 300.00169 * 17 15 13 21 21 C 1.38270 * 120.11186 * 0.25763 * 7 6 5 22 22 C 1.38152 * 120.05286 * 359.44883 * 21 7 6 23 23 H 1.09001 * 109.47451 * 300.00199 * 1 2 3 24 24 H 1.09001 * 109.47384 * 60.00031 * 1 2 3 25 25 H 1.09004 * 109.46971 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47308 * 239.99853 * 2 1 3 27 27 H 1.09002 * 109.47041 * 119.99551 * 2 1 3 28 28 H 1.08002 * 120.02300 * 0.02562 * 5 4 3 29 29 H 1.08007 * 119.96870 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.47587 * 330.00799 * 8 7 6 31 31 H 1.09000 * 109.47203 * 209.99892 * 8 7 6 32 32 H 1.09000 * 109.47347 * 60.00238 * 9 8 7 33 33 H 1.08997 * 109.47714 * 299.99778 * 9 8 7 34 34 H 0.96700 * 114.00311 * 300.00378 * 12 10 9 35 35 H 0.96998 * 119.99752 * 179.97438 * 16 15 13 36 36 H 1.07996 * 119.97212 * 179.69942 * 21 7 6 37 37 H 1.07990 * 120.03086 * 180.25187 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 3.8850 2.8070 0.0000 6 6 5.2548 2.9853 0.0001 7 6 6.0961 1.8881 0.0000 8 6 7.5901 2.0856 -0.0005 9 6 8.0960 2.1526 1.4419 10 6 9.6128 2.3538 1.4414 11 1 9.8621 3.2361 0.8519 12 8 10.2454 1.2059 0.8719 13 6 10.0950 2.5426 2.8567 14 1 9.3900 2.5216 3.6746 15 6 11.4360 2.7420 3.1073 16 7 12.2944 2.7671 2.1113 17 14 12.0336 2.9767 4.8615 18 1 11.6932 1.7753 5.6652 19 1 13.5056 3.1718 4.8611 20 1 11.3767 4.1701 5.4527 21 6 5.5689 0.6098 -0.0054 22 6 4.1997 0.4260 0.0007 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.2283 3.6644 -0.0004 29 1 5.6691 3.9828 0.0001 30 1 7.8335 3.0154 -0.5145 31 1 8.0668 1.2507 -0.5143 32 1 7.8527 1.2228 1.9559 33 1 7.6194 2.9874 1.9557 34 1 10.0669 0.3825 1.3464 35 1 13.2378 2.9077 2.2876 36 1 6.2281 -0.2456 -0.0103 37 1 3.7884 -0.5725 0.0006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:40 Heat of formation + Delta-G solvation = -87.167019 kcal Electronic energy + Delta-G solvation = -17480.800176 eV Core-core repulsion = 14608.591660 eV Total energy + Delta-G solvation = -2872.208517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10321 -37.88115 -35.99520 -32.95513 -32.07115 -31.65320 -30.79455 -28.89001 -26.24930 -24.19774 -23.38210 -21.96483 -20.87029 -20.03669 -18.26275 -16.81606 -16.23056 -15.95014 -15.24153 -14.58842 -14.41372 -14.31832 -13.98071 -13.50162 -13.46542 -13.27741 -12.90605 -12.61458 -12.31214 -11.98641 -11.76433 -11.50888 -11.30481 -10.90161 -10.85898 -10.76411 -10.67759 -10.49855 -10.04460 -9.91655 -8.94780 -8.86950 -8.53502 -8.19382 -7.77600 -5.96709 -4.14589 1.47267 1.58822 3.12969 3.31047 3.36144 3.38271 3.90873 4.42071 4.67090 4.70207 4.91375 4.99027 5.01650 5.23415 5.24734 5.30053 5.50386 5.50959 5.56291 5.72844 5.79639 5.87856 6.07407 6.16716 6.30633 6.39948 6.45180 6.53625 6.62988 6.86646 6.91119 6.99675 7.15116 7.45295 7.78300 7.90532 8.24503 8.88650 9.43236 9.62897 11.07367 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.042733 B = 0.003609 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.077229 B = 7757.161509 C = 7918.802296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.321 6.321 4 C 0.111 3.889 5 C -0.150 4.150 6 C -0.081 4.081 7 C -0.100 4.100 8 C -0.077 4.077 9 C -0.133 4.133 10 C 0.227 3.773 11 H 0.055 0.945 12 O -0.567 6.567 13 C -0.572 4.572 14 H 0.054 0.946 15 C 0.078 3.922 16 N -0.862 5.862 17 Si 0.888 3.112 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.081 4.081 22 C -0.206 4.206 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.344 0.656 35 H 0.260 0.740 36 H 0.124 0.876 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.380 -4.922 -4.945 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.066 3.934 5 C -0.169 4.169 6 C -0.099 4.099 7 C -0.100 4.100 8 C -0.114 4.114 9 C -0.171 4.171 10 C 0.170 3.830 11 H 0.073 0.927 12 O -0.370 6.370 13 C -0.610 4.610 14 H 0.072 0.928 15 C -0.128 4.128 16 N -0.498 5.498 17 Si 0.715 3.285 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.099 4.099 22 C -0.225 4.225 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.187 0.813 35 H 0.070 0.930 36 H 0.142 0.858 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.127 -4.297 -5.442 20.346 hybrid contribution 0.206 -0.478 1.505 1.593 sum -18.922 -4.775 -3.937 19.908 Atomic orbital electron populations 1.21769 0.92967 1.02694 1.03423 1.22723 0.95629 0.82375 1.01328 1.86032 1.19448 1.28890 1.89167 1.18926 0.81877 0.94271 0.98300 1.20381 0.95213 0.94550 1.06738 1.20931 0.91874 0.99116 0.98026 1.20159 0.97038 0.92694 1.00104 1.20646 0.88865 1.02587 0.99350 1.22339 1.00495 1.00937 0.93323 1.19401 0.84449 0.85863 0.93329 0.92742 1.86543 1.76434 1.17488 1.56501 1.21687 0.93081 1.52783 0.93400 0.92750 1.25059 0.97022 0.93999 0.96723 1.70067 1.02436 1.46656 1.30598 0.86753 0.77618 0.78773 0.85314 1.20185 1.21228 1.20178 1.20894 0.93967 0.97177 0.97843 1.21175 0.94424 0.97640 1.09260 0.91578 0.91615 0.90512 0.92213 0.92154 0.85630 0.85334 0.91616 0.90858 0.93219 0.92579 0.81300 0.92999 0.85790 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.15 0.38 -0.64 16 2 C 0.05 0.49 5.46 37.15 0.20 0.70 16 3 O -0.32 -4.03 10.14 -19.42 -0.20 -4.23 16 4 C 0.11 1.52 6.69 -39.21 -0.26 1.26 16 5 C -0.15 -2.07 9.99 -39.44 -0.39 -2.46 16 6 C -0.08 -1.18 9.69 -39.61 -0.38 -1.56 16 7 C -0.10 -1.56 5.13 -104.60 -0.54 -2.09 16 8 C -0.08 -1.35 5.24 -27.88 -0.15 -1.49 16 9 C -0.13 -2.71 4.81 -26.73 -0.13 -2.84 16 10 C 0.23 5.75 2.82 -27.88 -0.08 5.67 16 11 H 0.05 1.51 8.14 -51.93 -0.42 1.09 16 12 O -0.57 -14.51 12.26 -35.23 -0.43 -14.94 16 13 C -0.57 -15.88 8.76 -34.44 -0.30 -16.19 16 14 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 16 N -0.86 -25.75 12.84 55.43 0.71 -25.04 16 17 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.08 -1.16 9.69 -39.60 -0.38 -1.54 16 22 C -0.21 -2.71 9.04 -39.43 -0.36 -3.07 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 27 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 28 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.07 1.30 7.76 -51.93 -0.40 0.89 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.34 7.80 9.04 45.56 0.41 8.21 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.12 1.31 6.30 -52.49 -0.33 0.98 16 LS Contribution 314.70 15.07 4.74 4.74 Total: -1.00 -31.41 314.70 -7.56 -38.97 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.88 Total: 6.30 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -2.48 Total: -22.17 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.71 Total: -25.04 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.63 Total: -19.18 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.41 -7.56 -38.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.197 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds