Wall clock time and date at job start Mon Mar 30 2020 06:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42908 * 109.46961 * 2 1 4 4 C 1.35898 * 117.00181 * 179.97438 * 3 2 1 5 5 C 1.38731 * 120.05788 * 179.97438 * 4 3 2 6 6 C 1.38140 * 119.94182 * 180.02562 * 5 4 3 7 7 C 1.38260 * 120.06083 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.94604 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46467 * 90.00389 * 8 7 6 10 10 C 1.53001 * 109.46882 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47164 * 54.99936 * 10 9 8 12 12 O 1.42903 * 109.47171 * 294.99670 * 10 9 8 13 13 C 1.50707 * 109.47316 * 175.00354 * 10 9 8 14 14 H 1.07995 * 119.99310 * 359.97438 * 13 10 9 15 15 C 1.37872 * 119.99931 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00169 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 119.99871 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.46796 * 60.00023 * 17 15 13 19 19 H 1.48494 * 109.47313 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47022 * 300.00169 * 17 15 13 21 21 C 1.38270 * 120.11186 * 0.25763 * 7 6 5 22 22 C 1.38152 * 120.05286 * 359.44883 * 21 7 6 23 23 H 1.09001 * 109.47451 * 300.00199 * 1 2 3 24 24 H 1.09001 * 109.47384 * 60.00031 * 1 2 3 25 25 H 1.09004 * 109.46971 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47308 * 239.99853 * 2 1 3 27 27 H 1.09002 * 109.47041 * 119.99551 * 2 1 3 28 28 H 1.08002 * 120.02300 * 0.02562 * 5 4 3 29 29 H 1.08007 * 119.96870 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.47587 * 330.00799 * 8 7 6 31 31 H 1.09000 * 109.47203 * 209.99892 * 8 7 6 32 32 H 1.09000 * 109.47347 * 60.00238 * 9 8 7 33 33 H 1.08997 * 109.47714 * 299.99778 * 9 8 7 34 34 H 0.96700 * 114.00311 * 300.00378 * 12 10 9 35 35 H 0.96998 * 119.99752 * 179.97438 * 16 15 13 36 36 H 1.07996 * 119.97212 * 179.69942 * 21 7 6 37 37 H 1.07990 * 120.03086 * 180.25187 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 3.8850 2.8070 0.0000 6 6 5.2548 2.9853 0.0001 7 6 6.0961 1.8881 0.0000 8 6 7.5901 2.0856 -0.0005 9 6 8.0960 2.1526 1.4419 10 6 9.6128 2.3538 1.4414 11 1 9.8621 3.2361 0.8519 12 8 10.2454 1.2059 0.8719 13 6 10.0950 2.5426 2.8567 14 1 9.3900 2.5216 3.6746 15 6 11.4360 2.7420 3.1073 16 7 12.2944 2.7671 2.1113 17 14 12.0336 2.9767 4.8615 18 1 11.6932 1.7753 5.6652 19 1 13.5056 3.1718 4.8611 20 1 11.3767 4.1701 5.4527 21 6 5.5689 0.6098 -0.0054 22 6 4.1997 0.4260 0.0007 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.2283 3.6644 -0.0004 29 1 5.6691 3.9828 0.0001 30 1 7.8335 3.0154 -0.5145 31 1 8.0668 1.2507 -0.5143 32 1 7.8527 1.2228 1.9559 33 1 7.6194 2.9874 1.9557 34 1 10.0669 0.3825 1.3464 35 1 13.2378 2.9077 2.2876 36 1 6.2281 -0.2456 -0.0103 37 1 3.7884 -0.5725 0.0006 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232456.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:39 Heat of formation + Delta-G solvation = -106.789694 kcal Electronic energy + Delta-G solvation = -17481.651079 eV Core-core repulsion = 14608.591660 eV Total energy + Delta-G solvation = -2873.059420 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.10075 -39.00993 -37.81718 -34.38958 -34.11681 -32.56910 -31.80808 -30.39786 -27.99788 -25.29750 -24.75097 -22.99900 -22.30614 -21.54518 -19.21613 -18.89318 -17.01806 -17.00806 -16.70195 -16.51463 -16.04737 -15.87018 -15.32929 -14.68697 -14.39337 -14.36623 -14.32414 -13.68651 -13.60681 -13.30548 -13.05252 -12.92421 -12.78313 -12.57837 -12.34594 -12.27700 -11.94135 -11.77462 -11.51202 -11.48159 -10.97568 -10.68623 -10.10861 -9.93083 -8.96716 -8.11668 -6.37707 0.41126 0.48125 1.40653 1.42311 1.50555 2.28880 2.39983 2.81431 3.13322 3.85130 3.94400 4.00185 4.06880 4.14984 4.27452 4.32206 4.38116 4.48266 4.50337 4.65245 4.71898 4.76248 4.95038 4.95282 4.99516 5.14131 5.17610 5.21284 5.36266 5.44077 5.47136 5.64293 5.76547 5.85980 5.87957 6.12827 6.49518 6.74519 7.35125 7.58779 8.92049 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.042733 B = 0.003609 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.077229 B = 7757.161509 C = 7918.802296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.332 6.332 4 C 0.109 3.891 5 C -0.159 4.159 6 C -0.087 4.087 7 C -0.120 4.120 8 C -0.065 4.065 9 C -0.116 4.116 10 C 0.225 3.775 11 H 0.021 0.979 12 O -0.580 6.580 13 C -0.588 4.588 14 H 0.057 0.943 15 C 0.023 3.977 16 N -0.901 5.901 17 Si 0.958 3.042 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.269 1.269 21 C -0.086 4.086 22 C -0.206 4.206 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.356 0.644 35 H 0.261 0.739 36 H 0.134 0.866 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.040 -5.808 -4.165 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.247 6.247 4 C 0.064 3.936 5 C -0.177 4.177 6 C -0.105 4.105 7 C -0.120 4.120 8 C -0.102 4.102 9 C -0.154 4.154 10 C 0.167 3.833 11 H 0.039 0.961 12 O -0.384 6.384 13 C -0.626 4.626 14 H 0.075 0.925 15 C -0.179 4.179 16 N -0.539 5.539 17 Si 0.783 3.217 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.104 4.104 22 C -0.224 4.224 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.158 0.842 29 H 0.153 0.847 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.201 0.799 35 H 0.070 0.930 36 H 0.151 0.849 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.813 -5.194 -4.657 21.951 hybrid contribution 0.624 -0.242 1.220 1.392 sum -20.189 -5.436 -3.437 21.189 Atomic orbital electron populations 1.21801 0.91353 1.04173 1.03186 1.23058 0.96977 0.80908 1.02163 1.86037 1.18645 1.31200 1.88842 1.19111 0.82669 0.94415 0.97420 1.20581 0.95092 0.95454 1.06613 1.21051 0.92296 0.99249 0.97897 1.20003 0.95659 0.93818 1.02511 1.20422 0.90553 1.02180 0.97054 1.22057 0.96827 1.00941 0.95551 1.19300 0.87500 0.84825 0.91629 0.96116 1.86480 1.77029 1.18118 1.56812 1.22103 0.93492 1.52380 0.94587 0.92491 1.25929 0.97265 0.93616 1.01067 1.70207 1.02710 1.47960 1.32983 0.85635 0.77010 0.79088 0.79984 1.19188 1.20948 1.19399 1.21059 0.94835 0.96950 0.97556 1.21409 0.93800 0.98815 1.08380 0.91919 0.91753 0.88171 0.91178 0.91432 0.84223 0.84660 0.92097 0.91326 0.92706 0.92819 0.79940 0.93004 0.84859 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 71.98 0.74 -0.91 16 2 C 0.04 0.67 5.46 71.98 0.39 1.07 16 3 O -0.33 -7.70 10.14 -92.41 -0.94 -8.63 16 4 C 0.11 2.79 6.69 22.51 0.15 2.94 16 5 C -0.16 -4.17 9.99 22.36 0.22 -3.94 16 6 C -0.09 -2.45 9.69 22.25 0.22 -2.24 16 7 C -0.12 -3.65 5.13 -19.85 -0.10 -3.75 16 8 C -0.06 -2.27 5.24 29.85 0.16 -2.11 16 9 C -0.12 -4.74 4.81 30.60 0.15 -4.59 16 10 C 0.22 11.60 2.82 29.85 0.08 11.69 16 11 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 12 O -0.58 -30.13 12.26 -148.98 -1.83 -31.96 16 13 C -0.59 -32.83 8.76 25.60 0.22 -32.61 16 14 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 15 C 0.02 1.32 5.40 84.65 0.46 1.78 16 16 N -0.90 -54.63 12.84 21.45 0.28 -54.36 16 17 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 C -0.09 -2.34 9.69 22.26 0.22 -2.13 16 22 C -0.21 -4.97 9.04 22.37 0.20 -4.76 16 23 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 27 H 0.07 0.95 7.66 -2.39 -0.02 0.94 16 28 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 29 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 30 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 31 H 0.07 2.43 7.76 -2.39 -0.02 2.42 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.36 16.23 9.04 -74.06 -0.67 15.56 16 35 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 37 H 0.15 2.72 6.30 -2.92 -0.02 2.70 16 Total: -1.00 -66.57 314.70 3.02 -63.54 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.38 Total: 25.12 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 3.11 Total: -39.56 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.28 Total: -54.36 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -2.76 Total: -40.59 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -66.57 3.02 -63.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232456.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.245 kcal (2) G-P(sol) polarization free energy of solvation -66.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds