Wall clock time and date at job start Mon Mar 30 2020 06:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47019 * 2 1 4 4 C 1.35897 * 117.00045 * 180.02562 * 3 2 1 5 5 C 1.38738 * 120.05494 * 0.27113 * 4 3 2 6 6 C 1.38141 * 119.94395 * 180.25974 * 5 4 3 7 7 C 1.38274 * 120.05552 * 359.44290 * 6 5 4 8 8 C 1.50696 * 119.94301 * 180.27916 * 7 6 5 9 9 C 1.52998 * 109.46876 * 90.00487 * 8 7 6 10 10 C 1.53011 * 109.47050 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.46581 * 305.00225 * 10 9 8 12 12 O 1.42906 * 109.46980 * 64.99518 * 10 9 8 13 13 C 1.50697 * 109.47284 * 184.99724 * 10 9 8 14 14 H 1.08002 * 119.99675 * 0.02562 * 13 10 9 15 15 C 1.37869 * 120.00026 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00055 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 120.00194 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.46962 * 90.00158 * 17 15 13 19 19 H 1.48501 * 109.47115 * 210.00267 * 17 15 13 20 20 H 1.48503 * 109.46900 * 330.00150 * 17 15 13 21 21 C 1.38261 * 120.10990 * 0.30244 * 7 6 5 22 22 C 1.38149 * 120.05703 * 359.97438 * 21 7 6 23 23 H 1.09002 * 109.47093 * 60.00029 * 1 2 3 24 24 H 1.09003 * 109.47247 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47449 * 300.00423 * 1 2 3 26 26 H 1.08999 * 109.47074 * 240.00245 * 2 1 3 27 27 H 1.08996 * 109.46867 * 119.99586 * 2 1 3 28 28 H 1.07998 * 120.02566 * 359.97438 * 5 4 3 29 29 H 1.08002 * 119.97550 * 179.72852 * 6 5 4 30 30 H 1.08996 * 109.46864 * 210.00120 * 8 7 6 31 31 H 1.09002 * 109.47297 * 330.00370 * 8 7 6 32 32 H 1.08996 * 109.47074 * 299.99504 * 9 8 7 33 33 H 1.08993 * 109.47504 * 59.99836 * 9 8 7 34 34 H 0.96697 * 113.99470 * 60.00241 * 12 10 9 35 35 H 0.97003 * 120.00112 * 180.02562 * 16 15 13 36 36 H 1.07996 * 119.97484 * 179.97438 * 21 7 6 37 37 H 1.07998 * 120.02878 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1998 0.4260 -0.0067 6 6 5.5689 0.6096 -0.0019 7 6 6.0962 1.8879 -0.0024 8 6 7.5902 2.0853 -0.0034 9 6 8.0947 2.1520 -1.4463 10 6 9.6116 2.3530 -1.4474 11 1 9.8614 3.2354 -0.8583 12 8 10.2446 1.2053 -0.8780 13 6 10.0924 2.5414 -2.8631 14 1 9.3866 2.5203 -3.6804 15 6 11.4330 2.7417 -3.1150 16 7 12.2923 2.7680 -2.1197 17 14 12.0289 2.9759 -4.8699 18 1 12.0031 4.4206 -5.2127 19 1 13.4167 2.4623 -4.9941 20 1 11.1405 2.2310 -5.7978 21 6 5.2550 2.9852 -0.0016 22 6 3.8851 2.8068 -0.0007 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7884 -0.5726 -0.0107 29 1 6.2281 -0.2459 -0.0022 30 1 7.8341 3.0152 0.5101 31 1 8.0673 1.2506 0.5102 32 1 7.8508 1.2220 -1.9598 33 1 7.6176 2.9865 -1.9599 34 1 10.0656 0.3818 -1.3521 35 1 13.2355 2.9093 -2.2969 36 1 5.6692 3.9825 -0.0016 37 1 3.2284 3.6642 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:43 Heat of formation + Delta-G solvation = -87.219113 kcal Electronic energy + Delta-G solvation = -17481.241453 eV Core-core repulsion = 14609.030678 eV Total energy + Delta-G solvation = -2872.210776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.10375 -37.88192 -35.99607 -32.95586 -32.07264 -31.65322 -30.79449 -28.88995 -26.25078 -24.19769 -23.38391 -21.96478 -20.87087 -20.03776 -18.26314 -16.81841 -16.23114 -15.95039 -15.24090 -14.58834 -14.41305 -14.32018 -13.98267 -13.50288 -13.46393 -13.27715 -12.90650 -12.61476 -12.31261 -11.98740 -11.76476 -11.50863 -11.30520 -10.92658 -10.85433 -10.76046 -10.67531 -10.48016 -10.04541 -9.91681 -8.95197 -8.86942 -8.53215 -8.19534 -7.77591 -5.96990 -4.14742 1.47283 1.58800 3.12990 3.29568 3.36524 3.39406 3.90854 4.41969 4.67110 4.70194 4.91380 4.99016 5.01660 5.23422 5.24743 5.29901 5.50381 5.50979 5.56317 5.72849 5.79638 5.87852 6.07398 6.16723 6.30604 6.39931 6.45195 6.53622 6.62960 6.86574 6.91128 6.99670 7.15085 7.45312 7.78326 7.90440 8.24394 8.88729 9.43154 9.62805 11.07116 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.042720 B = 0.003609 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.267012 B = 7755.930537 C = 7917.595214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.321 6.321 4 C 0.111 3.889 5 C -0.206 4.206 6 C -0.081 4.081 7 C -0.100 4.100 8 C -0.077 4.077 9 C -0.133 4.133 10 C 0.227 3.773 11 H 0.055 0.945 12 O -0.567 6.567 13 C -0.571 4.571 14 H 0.055 0.945 15 C 0.077 3.923 16 N -0.861 5.861 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.081 4.081 22 C -0.150 4.150 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.344 0.656 35 H 0.260 0.740 36 H 0.129 0.871 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.389 -4.925 4.950 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.066 3.934 5 C -0.225 4.225 6 C -0.099 4.099 7 C -0.100 4.100 8 C -0.114 4.114 9 C -0.171 4.171 10 C 0.169 3.831 11 H 0.073 0.927 12 O -0.370 6.370 13 C -0.609 4.609 14 H 0.073 0.927 15 C -0.128 4.128 16 N -0.498 5.498 17 Si 0.715 3.285 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.099 4.099 22 C -0.169 4.169 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.187 0.813 35 H 0.069 0.931 36 H 0.147 0.853 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.140 -4.305 5.443 20.360 hybrid contribution 0.214 -0.465 -1.496 1.581 sum -18.926 -4.770 3.948 19.913 Atomic orbital electron populations 1.21770 0.92967 1.02694 1.03423 1.22724 0.95629 0.82377 1.01327 1.86030 1.19446 1.28890 1.89166 1.18925 0.81877 0.94271 0.98302 1.21174 0.94424 0.97643 1.09255 1.20893 0.93967 0.97181 0.97837 1.20160 0.97038 0.92694 1.00105 1.20644 0.88869 1.02588 0.99348 1.22338 1.00498 1.00940 0.93313 1.19406 0.84449 0.85871 0.93349 0.92746 1.86544 1.76387 1.17483 1.56545 1.21720 0.93093 1.52634 0.93412 0.92700 1.25062 0.97028 0.94010 0.96732 1.70080 1.02386 1.46728 1.30567 0.86695 0.78093 0.78418 0.85293 1.20566 1.21153 1.19853 1.20932 0.91873 0.99114 0.98029 1.20382 0.95213 0.94551 1.06740 0.91579 0.90512 0.91614 0.92154 0.92214 0.85976 0.85789 0.91619 0.90857 0.93217 0.92580 0.81300 0.93061 0.85335 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.49 5.46 37.16 0.20 0.70 16 3 O -0.32 -4.03 10.14 -19.42 -0.20 -4.23 16 4 C 0.11 1.52 6.69 -39.21 -0.26 1.26 16 5 C -0.21 -2.71 9.04 -39.43 -0.36 -3.07 16 6 C -0.08 -1.16 9.69 -39.60 -0.38 -1.54 16 7 C -0.10 -1.56 5.13 -104.60 -0.54 -2.09 16 8 C -0.08 -1.35 5.24 -27.89 -0.15 -1.49 16 9 C -0.13 -2.71 4.81 -26.73 -0.13 -2.84 16 10 C 0.23 5.74 2.82 -27.88 -0.08 5.66 16 11 H 0.05 1.51 8.14 -51.93 -0.42 1.09 16 12 O -0.57 -14.51 12.27 -35.23 -0.43 -14.94 16 13 C -0.57 -15.85 8.76 -34.44 -0.30 -16.15 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 15 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 16 N -0.86 -25.75 12.84 55.43 0.71 -25.04 16 17 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.08 -1.18 9.69 -39.61 -0.38 -1.56 16 22 C -0.15 -2.07 9.99 -39.43 -0.39 -2.46 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 27 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 28 H 0.12 1.31 6.30 -52.49 -0.33 0.98 16 29 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.07 1.30 7.77 -51.93 -0.40 0.89 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.34 7.79 9.04 45.56 0.41 8.20 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 314.70 15.07 4.74 4.74 Total: -1.00 -31.43 314.70 -7.56 -39.00 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.88 Total: 6.26 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: -2.48 Total: -22.15 kcal Atomic # 7 Polarization: -25.75 SS G_CDS: 0.71 Total: -25.04 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.63 Total: -19.17 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.43 -7.56 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.221 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds