Wall clock time and date at job start Mon Mar 30 2020 06:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47019 * 2 1 4 4 C 1.35897 * 117.00045 * 180.02562 * 3 2 1 5 5 C 1.38738 * 120.05494 * 0.27113 * 4 3 2 6 6 C 1.38141 * 119.94395 * 180.25974 * 5 4 3 7 7 C 1.38274 * 120.05552 * 359.44290 * 6 5 4 8 8 C 1.50696 * 119.94301 * 180.27916 * 7 6 5 9 9 C 1.52998 * 109.46876 * 90.00487 * 8 7 6 10 10 C 1.53011 * 109.47050 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.46581 * 305.00225 * 10 9 8 12 12 O 1.42906 * 109.46980 * 64.99518 * 10 9 8 13 13 C 1.50697 * 109.47284 * 184.99724 * 10 9 8 14 14 H 1.08002 * 119.99675 * 0.02562 * 13 10 9 15 15 C 1.37869 * 120.00026 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00055 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 120.00194 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.46962 * 90.00158 * 17 15 13 19 19 H 1.48501 * 109.47115 * 210.00267 * 17 15 13 20 20 H 1.48503 * 109.46900 * 330.00150 * 17 15 13 21 21 C 1.38261 * 120.10990 * 0.30244 * 7 6 5 22 22 C 1.38149 * 120.05703 * 359.97438 * 21 7 6 23 23 H 1.09002 * 109.47093 * 60.00029 * 1 2 3 24 24 H 1.09003 * 109.47247 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47449 * 300.00423 * 1 2 3 26 26 H 1.08999 * 109.47074 * 240.00245 * 2 1 3 27 27 H 1.08996 * 109.46867 * 119.99586 * 2 1 3 28 28 H 1.07998 * 120.02566 * 359.97438 * 5 4 3 29 29 H 1.08002 * 119.97550 * 179.72852 * 6 5 4 30 30 H 1.08996 * 109.46864 * 210.00120 * 8 7 6 31 31 H 1.09002 * 109.47297 * 330.00370 * 8 7 6 32 32 H 1.08996 * 109.47074 * 299.99504 * 9 8 7 33 33 H 1.08993 * 109.47504 * 59.99836 * 9 8 7 34 34 H 0.96697 * 113.99470 * 60.00241 * 12 10 9 35 35 H 0.97003 * 120.00112 * 180.02562 * 16 15 13 36 36 H 1.07996 * 119.97484 * 179.97438 * 21 7 6 37 37 H 1.07998 * 120.02878 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1998 0.4260 -0.0067 6 6 5.5689 0.6096 -0.0019 7 6 6.0962 1.8879 -0.0024 8 6 7.5902 2.0853 -0.0034 9 6 8.0947 2.1520 -1.4463 10 6 9.6116 2.3530 -1.4474 11 1 9.8614 3.2354 -0.8583 12 8 10.2446 1.2053 -0.8780 13 6 10.0924 2.5414 -2.8631 14 1 9.3866 2.5203 -3.6804 15 6 11.4330 2.7417 -3.1150 16 7 12.2923 2.7680 -2.1197 17 14 12.0289 2.9759 -4.8699 18 1 12.0031 4.4206 -5.2127 19 1 13.4167 2.4623 -4.9941 20 1 11.1405 2.2310 -5.7978 21 6 5.2550 2.9852 -0.0016 22 6 3.8851 2.8068 -0.0007 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7884 -0.5726 -0.0107 29 1 6.2281 -0.2459 -0.0022 30 1 7.8341 3.0152 0.5101 31 1 8.0673 1.2506 0.5102 32 1 7.8508 1.2220 -1.9598 33 1 7.6176 2.9865 -1.9599 34 1 10.0656 0.3818 -1.3521 35 1 13.2355 2.9093 -2.2969 36 1 5.6692 3.9825 -0.0016 37 1 3.2284 3.6642 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:42 Heat of formation + Delta-G solvation = -106.866788 kcal Electronic energy + Delta-G solvation = -17482.093440 eV Core-core repulsion = 14609.030678 eV Total energy + Delta-G solvation = -2873.062763 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.10118 -39.01070 -37.81749 -34.39038 -34.11794 -32.56866 -31.80797 -30.39784 -27.99924 -25.29820 -24.75174 -22.99952 -22.30630 -21.54547 -19.21647 -18.89586 -17.01960 -17.00750 -16.70201 -16.51534 -16.04737 -15.87054 -15.32975 -14.68762 -14.39247 -14.36623 -14.32555 -13.68474 -13.61059 -13.30571 -13.05645 -12.91503 -12.81108 -12.57887 -12.32633 -12.27060 -11.94134 -11.77445 -11.51293 -11.48033 -10.98169 -10.68448 -10.10908 -9.93066 -8.96695 -8.11925 -6.37815 0.41151 0.48116 1.40590 1.40750 1.51914 2.28902 2.39828 2.81427 3.13184 3.85124 3.94405 4.00218 4.06901 4.14984 4.27494 4.32219 4.38112 4.48283 4.50379 4.65302 4.71896 4.76243 4.95044 4.95289 4.99532 5.14111 5.17623 5.21296 5.36273 5.44103 5.47188 5.64395 5.76543 5.86004 5.87944 6.12783 6.49543 6.74635 7.35089 7.58764 8.91996 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.042720 B = 0.003609 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.267012 B = 7755.930537 C = 7917.595214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.332 6.332 4 C 0.109 3.891 5 C -0.206 4.206 6 C -0.086 4.086 7 C -0.120 4.120 8 C -0.065 4.065 9 C -0.116 4.116 10 C 0.224 3.776 11 H 0.021 0.979 12 O -0.580 6.580 13 C -0.586 4.586 14 H 0.057 0.943 15 C 0.023 3.977 16 N -0.901 5.901 17 Si 0.959 3.041 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.265 1.265 21 C -0.087 4.087 22 C -0.159 4.159 23 H 0.062 0.938 24 H 0.100 0.900 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.147 0.853 29 H 0.134 0.866 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.356 0.644 35 H 0.261 0.739 36 H 0.136 0.864 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.044 -5.797 4.180 22.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.247 6.247 4 C 0.064 3.936 5 C -0.224 4.224 6 C -0.104 4.104 7 C -0.120 4.120 8 C -0.102 4.102 9 C -0.154 4.154 10 C 0.167 3.833 11 H 0.039 0.961 12 O -0.384 6.384 13 C -0.624 4.624 14 H 0.075 0.925 15 C -0.179 4.179 16 N -0.539 5.539 17 Si 0.783 3.217 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.189 1.189 21 C -0.105 4.105 22 C -0.177 4.177 23 H 0.081 0.919 24 H 0.118 0.882 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.165 0.835 29 H 0.151 0.849 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.201 0.799 35 H 0.070 0.930 36 H 0.153 0.847 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.820 -5.187 4.669 21.959 hybrid contribution 0.632 -0.234 -1.214 1.389 sum -20.188 -5.420 3.455 21.187 Atomic orbital electron populations 1.21801 0.91352 1.04172 1.03187 1.23058 0.96978 0.80911 1.02162 1.86035 1.18644 1.31198 1.88841 1.19109 0.82669 0.94416 0.97421 1.21407 0.93801 0.98818 1.08378 1.21057 0.94835 0.96955 0.97554 1.20004 0.95661 0.93817 1.02511 1.20420 0.90557 1.02181 0.97051 1.22057 0.96831 1.00944 0.95543 1.19305 0.87498 0.84835 0.91644 0.96114 1.86481 1.76982 1.18116 1.56857 1.22123 0.93485 1.52233 0.94578 0.92503 1.25930 0.97270 0.93636 1.01072 1.70215 1.02696 1.48021 1.32955 0.85576 0.77536 0.78568 0.79999 1.19909 1.20825 1.18884 1.21052 0.92294 0.99248 0.97897 1.20583 0.95093 0.95454 1.06614 0.91920 0.88172 0.91752 0.91430 0.91182 0.83491 0.84861 0.92097 0.91327 0.92713 0.92812 0.79934 0.93013 0.84656 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 71.98 0.74 -0.91 16 2 C 0.04 0.67 5.46 71.98 0.39 1.07 16 3 O -0.33 -7.70 10.14 -92.39 -0.94 -8.63 16 4 C 0.11 2.79 6.69 22.51 0.15 2.94 16 5 C -0.21 -4.97 9.04 22.37 0.20 -4.77 16 6 C -0.09 -2.34 9.69 22.26 0.22 -2.13 16 7 C -0.12 -3.65 5.13 -19.85 -0.10 -3.75 16 8 C -0.06 -2.26 5.24 29.85 0.16 -2.11 16 9 C -0.12 -4.73 4.81 30.60 0.15 -4.59 16 10 C 0.22 11.59 2.82 29.85 0.08 11.67 16 11 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 12 O -0.58 -30.12 12.27 -148.98 -1.83 -31.94 16 13 C -0.59 -32.74 8.76 25.60 0.22 -32.52 16 14 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 15 C 0.02 1.30 5.40 84.65 0.46 1.76 16 16 N -0.90 -54.62 12.84 21.44 0.28 -54.35 16 17 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 21 C -0.09 -2.45 9.69 22.25 0.22 -2.24 16 22 C -0.16 -4.17 9.99 22.37 0.22 -3.94 16 23 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.95 7.65 -2.39 -0.02 0.94 16 27 H 0.07 0.95 7.67 -2.39 -0.02 0.93 16 28 H 0.15 2.72 6.30 -2.91 -0.02 2.70 16 29 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 30 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 31 H 0.07 2.43 7.77 -2.39 -0.02 2.42 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.36 16.21 9.04 -74.06 -0.67 15.55 16 35 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -66.61 314.70 3.02 -63.59 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.38 Total: 24.97 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 3.11 Total: -39.50 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.28 Total: -54.35 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -2.76 Total: -40.58 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -66.61 3.02 -63.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.281 kcal (2) G-P(sol) polarization free energy of solvation -66.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds