Wall clock time and date at job start Mon Mar 30 2020 06:51:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.42901 * 109.47019 * 2 1
4 4 C 1.35897 * 117.00045 * 180.02562 * 3 2 1
5 5 C 1.38738 * 120.05494 * 0.27113 * 4 3 2
6 6 C 1.38141 * 119.94395 * 180.25974 * 5 4 3
7 7 C 1.38274 * 120.05552 * 359.44290 * 6 5 4
8 8 C 1.50696 * 119.94301 * 180.27916 * 7 6 5
9 9 C 1.52998 * 109.46876 * 90.00487 * 8 7 6
10 10 C 1.53011 * 109.47050 * 179.97438 * 9 8 7
11 11 H 1.08999 * 109.46581 * 305.00225 * 10 9 8
12 12 O 1.42906 * 109.46980 * 64.99518 * 10 9 8
13 13 C 1.50697 * 109.47284 * 184.99724 * 10 9 8
14 14 H 1.08002 * 119.99675 * 0.02562 * 13 10 9
15 15 C 1.37869 * 120.00026 * 179.97438 * 13 10 9
16 16 N 1.31517 * 120.00055 * 0.02562 * 15 13 10
17 17 Si 1.86804 * 120.00194 * 180.02562 * 15 13 10
18 18 H 1.48499 * 109.46962 * 90.00158 * 17 15 13
19 19 H 1.48501 * 109.47115 * 210.00267 * 17 15 13
20 20 H 1.48503 * 109.46900 * 330.00150 * 17 15 13
21 21 C 1.38261 * 120.10990 * 0.30244 * 7 6 5
22 22 C 1.38149 * 120.05703 * 359.97438 * 21 7 6
23 23 H 1.09002 * 109.47093 * 60.00029 * 1 2 3
24 24 H 1.09003 * 109.47247 * 179.97438 * 1 2 3
25 25 H 1.08997 * 109.47449 * 300.00423 * 1 2 3
26 26 H 1.08999 * 109.47074 * 240.00245 * 2 1 3
27 27 H 1.08996 * 109.46867 * 119.99586 * 2 1 3
28 28 H 1.07998 * 120.02566 * 359.97438 * 5 4 3
29 29 H 1.08002 * 119.97550 * 179.72852 * 6 5 4
30 30 H 1.08996 * 109.46864 * 210.00120 * 8 7 6
31 31 H 1.09002 * 109.47297 * 330.00370 * 8 7 6
32 32 H 1.08996 * 109.47074 * 299.99504 * 9 8 7
33 33 H 1.08993 * 109.47504 * 59.99836 * 9 8 7
34 34 H 0.96697 * 113.99470 * 60.00241 * 12 10 9
35 35 H 0.97003 * 120.00112 * 180.02562 * 16 15 13
36 36 H 1.07996 * 119.97484 * 179.97438 * 21 7 6
37 37 H 1.07998 * 120.02878 * 180.02562 * 22 21 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.3536 1.5254 -0.0005
5 6 4.1998 0.4260 -0.0067
6 6 5.5689 0.6096 -0.0019
7 6 6.0962 1.8879 -0.0024
8 6 7.5902 2.0853 -0.0034
9 6 8.0947 2.1520 -1.4463
10 6 9.6116 2.3530 -1.4474
11 1 9.8614 3.2354 -0.8583
12 8 10.2446 1.2053 -0.8780
13 6 10.0924 2.5414 -2.8631
14 1 9.3866 2.5203 -3.6804
15 6 11.4330 2.7417 -3.1150
16 7 12.2923 2.7680 -2.1197
17 14 12.0289 2.9759 -4.8699
18 1 12.0031 4.4206 -5.2127
19 1 13.4167 2.4623 -4.9941
20 1 11.1405 2.2310 -5.7978
21 6 5.2550 2.9852 -0.0016
22 6 3.8851 2.8068 -0.0007
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3634 -1.0277 -0.0005
25 1 -0.3634 0.5139 0.8899
26 1 1.8933 -0.5138 -0.8900
27 1 1.8933 -0.5138 0.8900
28 1 3.7884 -0.5726 -0.0107
29 1 6.2281 -0.2459 -0.0022
30 1 7.8341 3.0152 0.5101
31 1 8.0673 1.2506 0.5102
32 1 7.8508 1.2220 -1.9598
33 1 7.6176 2.9865 -1.9599
34 1 10.0656 0.3818 -1.3521
35 1 13.2355 2.9093 -2.2969
36 1 5.6692 3.9825 -0.0016
37 1 3.2284 3.6642 -0.0004
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000041232458.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:51:42
Heat of formation + Delta-G solvation = -106.866788 kcal
Electronic energy + Delta-G solvation = -17482.093440 eV
Core-core repulsion = 14609.030678 eV
Total energy + Delta-G solvation = -2873.062763 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 250.136 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-41.10118 -39.01070 -37.81749 -34.39038 -34.11794 -32.56866 -31.80797 -30.39784
-27.99924 -25.29820 -24.75174 -22.99952 -22.30630 -21.54547 -19.21647 -18.89586
-17.01960 -17.00750 -16.70201 -16.51534 -16.04737 -15.87054 -15.32975 -14.68762
-14.39247 -14.36623 -14.32555 -13.68474 -13.61059 -13.30571 -13.05645 -12.91503
-12.81108 -12.57887 -12.32633 -12.27060 -11.94134 -11.77445 -11.51293 -11.48033
-10.98169 -10.68448 -10.10908 -9.93066 -8.96695 -8.11925 -6.37815 0.41151
0.48116 1.40590 1.40750 1.51914 2.28902 2.39828 2.81427 3.13184
3.85124 3.94405 4.00218 4.06901 4.14984 4.27494 4.32219 4.38112
4.48283 4.50379 4.65302 4.71896 4.76243 4.95044 4.95289 4.99532
5.14111 5.17623 5.21296 5.36273 5.44103 5.47188 5.64395 5.76543
5.86004 5.87944 6.12783 6.49543 6.74635 7.35089 7.58764 8.91996
Molecular weight = 250.14amu
Principal moments of inertia in cm(-1)
A = 0.042720 B = 0.003609 C = 0.003536
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 655.267012 B = 7755.930537 C = 7917.595214
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.043 3.957
3 O -0.332 6.332
4 C 0.109 3.891
5 C -0.206 4.206
6 C -0.086 4.086
7 C -0.120 4.120
8 C -0.065 4.065
9 C -0.116 4.116
10 C 0.224 3.776
11 H 0.021 0.979
12 O -0.580 6.580
13 C -0.586 4.586
14 H 0.057 0.943
15 C 0.023 3.977
16 N -0.901 5.901
17 Si 0.959 3.041
18 H -0.274 1.274
19 H -0.283 1.283
20 H -0.265 1.265
21 C -0.087 4.087
22 C -0.159 4.159
23 H 0.062 0.938
24 H 0.100 0.900
25 H 0.063 0.937
26 H 0.067 0.933
27 H 0.070 0.930
28 H 0.147 0.853
29 H 0.134 0.866
30 H 0.060 0.940
31 H 0.068 0.932
32 H 0.054 0.946
33 H 0.053 0.947
34 H 0.356 0.644
35 H 0.261 0.739
36 H 0.136 0.864
37 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.044 -5.797 4.180 22.225
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.031 4.031
3 O -0.247 6.247
4 C 0.064 3.936
5 C -0.224 4.224
6 C -0.104 4.104
7 C -0.120 4.120
8 C -0.102 4.102
9 C -0.154 4.154
10 C 0.167 3.833
11 H 0.039 0.961
12 O -0.384 6.384
13 C -0.624 4.624
14 H 0.075 0.925
15 C -0.179 4.179
16 N -0.539 5.539
17 Si 0.783 3.217
18 H -0.199 1.199
19 H -0.208 1.208
20 H -0.189 1.189
21 C -0.105 4.105
22 C -0.177 4.177
23 H 0.081 0.919
24 H 0.118 0.882
25 H 0.082 0.918
26 H 0.086 0.914
27 H 0.088 0.912
28 H 0.165 0.835
29 H 0.151 0.849
30 H 0.079 0.921
31 H 0.087 0.913
32 H 0.073 0.927
33 H 0.072 0.928
34 H 0.201 0.799
35 H 0.070 0.930
36 H 0.153 0.847
37 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -20.820 -5.187 4.669 21.959
hybrid contribution 0.632 -0.234 -1.214 1.389
sum -20.188 -5.420 3.455 21.187
Atomic orbital electron populations
1.21801 0.91352 1.04172 1.03187 1.23058 0.96978 0.80911 1.02162
1.86035 1.18644 1.31198 1.88841 1.19109 0.82669 0.94416 0.97421
1.21407 0.93801 0.98818 1.08378 1.21057 0.94835 0.96955 0.97554
1.20004 0.95661 0.93817 1.02511 1.20420 0.90557 1.02181 0.97051
1.22057 0.96831 1.00944 0.95543 1.19305 0.87498 0.84835 0.91644
0.96114 1.86481 1.76982 1.18116 1.56857 1.22123 0.93485 1.52233
0.94578 0.92503 1.25930 0.97270 0.93636 1.01072 1.70215 1.02696
1.48021 1.32955 0.85576 0.77536 0.78568 0.79999 1.19909 1.20825
1.18884 1.21052 0.92294 0.99248 0.97897 1.20583 0.95093 0.95454
1.06614 0.91920 0.88172 0.91752 0.91430 0.91182 0.83491 0.84861
0.92097 0.91327 0.92713 0.92812 0.79934 0.93013 0.84656 0.84224
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.65 10.28 71.98 0.74 -0.91 16
2 C 0.04 0.67 5.46 71.98 0.39 1.07 16
3 O -0.33 -7.70 10.14 -92.39 -0.94 -8.63 16
4 C 0.11 2.79 6.69 22.51 0.15 2.94 16
5 C -0.21 -4.97 9.04 22.37 0.20 -4.77 16
6 C -0.09 -2.34 9.69 22.26 0.22 -2.13 16
7 C -0.12 -3.65 5.13 -19.85 -0.10 -3.75 16
8 C -0.06 -2.26 5.24 29.85 0.16 -2.11 16
9 C -0.12 -4.73 4.81 30.60 0.15 -4.59 16
10 C 0.22 11.59 2.82 29.85 0.08 11.67 16
11 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16
12 O -0.58 -30.12 12.27 -148.98 -1.83 -31.94 16
13 C -0.59 -32.74 8.76 25.60 0.22 -32.52 16
14 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16
15 C 0.02 1.30 5.40 84.65 0.46 1.76 16
16 N -0.90 -54.62 12.84 21.44 0.28 -54.35 16
17 Si 0.96 43.84 29.54 68.60 2.03 45.87 16
18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16
19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
20 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16
21 C -0.09 -2.45 9.69 22.25 0.22 -2.24 16
22 C -0.16 -4.17 9.99 22.37 0.22 -3.94 16
23 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
24 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16
25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
26 H 0.07 0.95 7.65 -2.39 -0.02 0.94 16
27 H 0.07 0.95 7.67 -2.39 -0.02 0.93 16
28 H 0.15 2.72 6.30 -2.91 -0.02 2.70 16
29 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16
30 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16
31 H 0.07 2.43 7.77 -2.39 -0.02 2.42 16
32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16
33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16
34 H 0.36 16.21 9.04 -74.06 -0.67 15.55 16
35 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16
36 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16
37 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16
Total: -1.00 -66.61 314.70 3.02 -63.59
By element:
Atomic # 1 Polarization: 24.59 SS G_CDS: 0.38 Total: 24.97 kcal
Atomic # 6 Polarization: -42.61 SS G_CDS: 3.11 Total: -39.50 kcal
Atomic # 7 Polarization: -54.62 SS G_CDS: 0.28 Total: -54.35 kcal
Atomic # 8 Polarization: -37.81 SS G_CDS: -2.76 Total: -40.58 kcal
Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal
Total: -66.61 3.02 -63.59 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000041232458.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.281 kcal
(2) G-P(sol) polarization free energy of solvation -66.610 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.891 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.586 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.867 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds