Wall clock time and date at job start Mon Mar 30 2020 05:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47027 * 2 1 4 4 C 1.38161 * 120.02697 * 264.99945 * 3 2 1 5 5 C 1.38242 * 120.05640 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.94559 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47463 * 89.99344 * 6 5 4 8 8 H 1.08999 * 109.47269 * 305.00245 * 7 6 5 9 9 O 1.42903 * 109.46459 * 65.00139 * 7 6 5 10 10 C 1.50696 * 109.47222 * 184.99804 * 7 6 5 11 11 H 1.07991 * 120.00427 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99614 * 180.02562 * 10 7 6 13 13 N 1.31510 * 120.00261 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 119.99746 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47404 * 90.00100 * 14 12 10 16 16 H 1.48506 * 109.47412 * 210.00385 * 14 12 10 17 17 H 1.48504 * 109.47304 * 330.00008 * 14 12 10 18 18 C 1.38285 * 120.11098 * 0.24484 * 5 4 3 19 19 C 1.38129 * 120.05672 * 359.46084 * 18 5 4 20 20 C 1.38710 * 120.02705 * 85.02568 * 3 2 1 21 21 O 1.35898 * 120.05714 * 359.97438 * 20 3 2 22 22 C 1.42896 * 116.99975 * 180.02562 * 21 20 3 23 23 H 1.09000 * 109.46882 * 300.00025 * 1 2 3 24 24 H 1.08997 * 109.47267 * 60.00052 * 1 2 3 25 25 H 1.09003 * 109.46923 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47565 * 239.99814 * 2 1 3 27 27 H 1.09007 * 109.47289 * 119.99980 * 2 1 3 28 28 H 1.08004 * 119.97604 * 0.02562 * 4 3 2 29 29 H 1.09005 * 109.47009 * 329.99744 * 6 5 4 30 30 H 1.08999 * 109.46930 * 209.99556 * 6 5 4 31 31 H 0.96700 * 114.00311 * 60.00313 * 9 7 6 32 32 H 0.97001 * 120.00070 * 180.02562 * 13 12 10 33 33 H 1.08000 * 119.97497 * 179.70352 * 18 5 4 34 34 H 1.07998 * 120.02904 * 180.24828 * 19 18 5 35 35 H 1.09002 * 109.47559 * 59.99941 * 22 21 20 36 36 H 1.09006 * 109.47299 * 180.02562 * 22 21 20 37 37 H 1.09001 * 109.47316 * 299.99856 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3610 2.0379 -1.1916 5 6 2.8224 3.3411 -1.1923 6 6 3.1808 4.0116 -2.4935 7 6 1.9475 4.7179 -3.0600 8 1 1.1291 4.0036 -3.1501 9 8 1.5605 5.7775 -2.1827 10 6 2.2723 5.2837 -4.4184 11 1 3.2595 5.1523 -4.8361 12 6 1.3091 5.9691 -5.1280 13 7 0.1071 6.1295 -4.6191 14 14 1.7115 6.6699 -6.8121 15 1 1.4057 5.6582 -7.8553 16 1 0.8956 7.8878 -7.0494 17 1 3.1533 7.0209 -6.8706 18 6 2.9609 4.0286 -0.0005 19 6 2.6278 3.4183 1.1930 20 6 2.1655 2.1100 1.1964 21 8 1.8428 1.5052 2.3698 22 6 2.0044 2.2754 3.5626 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 2.2575 1.5018 -2.1235 29 1 3.5290 3.2623 -3.2045 30 1 3.9705 4.7426 -2.3200 31 1 2.2421 6.4516 -2.0556 32 1 -0.5707 6.6114 -5.1185 33 1 3.3260 5.0450 -0.0031 34 1 2.7323 3.9570 2.1232 35 1 1.3762 3.1646 3.5089 36 1 1.7128 1.6756 4.4248 37 1 3.0479 2.5735 3.6640 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:51 Heat of formation + Delta-G solvation = -84.615164 kcal Electronic energy + Delta-G solvation = -18232.973051 eV Core-core repulsion = 15360.875191 eV Total energy + Delta-G solvation = -2872.097860 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.00418 -37.58323 -35.70374 -33.88203 -32.08923 -31.20670 -29.29258 -28.17450 -26.96430 -24.74653 -23.63370 -21.74364 -20.98721 -19.62478 -17.68271 -16.91739 -16.17965 -15.60254 -14.81923 -14.59064 -14.28449 -14.06743 -13.85299 -13.56757 -13.37551 -13.01507 -12.89349 -12.58634 -11.93955 -11.73155 -11.54094 -11.24430 -11.22753 -10.99406 -10.81491 -10.65992 -10.61136 -10.47219 -10.18539 -9.96132 -9.06229 -8.54999 -8.45075 -8.18800 -7.44324 -5.98141 -4.17022 1.75347 1.89086 3.28563 3.35735 3.38047 3.47532 4.16638 4.41119 4.99572 5.05326 5.13626 5.17747 5.28527 5.34967 5.44411 5.53198 5.63130 5.66100 5.81181 5.87320 5.99824 6.11590 6.17357 6.18587 6.37583 6.44641 6.55457 6.63953 6.73255 6.85650 6.92125 7.20085 7.23374 7.69146 7.76586 7.88687 8.20808 8.86477 9.42351 9.61059 11.05606 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.033028 B = 0.005039 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.557920 B = 5555.289779 C = 5900.951181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C -0.114 4.114 4 C -0.085 4.085 5 C -0.082 4.082 6 C -0.108 4.108 7 C 0.237 3.763 8 H 0.055 0.945 9 O -0.562 6.562 10 C -0.574 4.574 11 H 0.056 0.944 12 C 0.079 3.921 13 N -0.859 5.859 14 Si 0.888 3.112 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.074 4.074 19 C -0.204 4.204 20 C 0.105 3.895 21 O -0.319 6.319 22 C 0.030 3.970 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.125 0.875 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.342 0.658 32 H 0.260 0.740 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.415 -8.411 12.482 15.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.114 4.114 4 C -0.103 4.103 5 C -0.082 4.082 6 C -0.145 4.145 7 C 0.179 3.821 8 H 0.073 0.927 9 O -0.364 6.364 10 C -0.611 4.611 11 H 0.074 0.926 12 C -0.127 4.127 13 N -0.495 5.495 14 Si 0.715 3.285 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.093 4.093 19 C -0.223 4.223 20 C 0.061 3.939 21 O -0.233 6.233 22 C -0.066 4.066 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.143 0.857 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.185 0.815 32 H 0.070 0.930 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.589 -8.893 12.523 15.773 hybrid contribution 0.730 1.102 -0.901 1.600 sum 4.319 -7.791 11.622 14.644 Atomic orbital electron populations 1.21711 0.95094 1.01014 1.02344 1.20297 0.96012 0.92449 1.02069 1.19132 1.04894 0.96934 0.90480 1.20793 0.98320 0.94702 0.96469 1.20064 0.98668 0.93607 0.95884 1.21505 1.01316 0.99445 0.92269 1.19338 0.90067 0.85850 0.86837 0.92714 1.86589 1.44350 1.36677 1.68781 1.21713 0.98299 1.37949 1.03181 0.92578 1.25050 0.94835 0.95386 0.97428 1.70085 1.02985 1.39453 1.36989 0.86692 0.78449 0.78697 0.84634 1.20544 1.21157 1.19826 1.20770 0.98264 0.99021 0.91206 1.21109 1.07292 0.94679 0.99173 1.18688 0.98264 0.91671 0.85266 1.86009 1.82822 1.41433 1.13027 1.22954 1.01070 0.96859 0.85705 0.92639 0.92471 0.92974 0.91528 0.91294 0.85729 0.91529 0.92203 0.81521 0.93020 0.86176 0.86213 0.92885 0.88841 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 37.16 0.37 -1.53 16 2 C -0.07 -0.97 5.79 -27.88 -0.16 -1.13 16 3 C -0.11 -1.86 5.15 -104.47 -0.54 -2.39 16 4 C -0.08 -1.50 9.33 -39.61 -0.37 -1.87 16 5 C -0.08 -1.54 4.97 -104.60 -0.52 -2.06 16 6 C -0.11 -2.20 4.97 -27.88 -0.14 -2.34 16 7 C 0.24 5.99 2.81 -27.88 -0.08 5.91 16 8 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 9 O -0.56 -14.46 12.23 -35.23 -0.43 -14.89 16 10 C -0.57 -15.71 8.76 -34.44 -0.30 -16.01 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 13 N -0.86 -25.63 12.84 55.43 0.71 -24.92 16 14 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 C -0.07 -1.30 9.40 -39.60 -0.37 -1.67 16 19 C -0.20 -3.22 9.04 -39.43 -0.36 -3.57 16 20 C 0.11 1.69 6.66 -39.22 -0.26 1.43 16 21 O -0.32 -4.51 9.63 -19.42 -0.19 -4.69 16 22 C 0.03 0.30 9.81 101.05 0.99 1.29 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 27 H 0.07 0.90 7.69 -51.92 -0.40 0.50 16 28 H 0.12 2.06 8.06 -52.48 -0.42 1.64 16 29 H 0.07 1.31 8.08 -51.93 -0.42 0.90 16 30 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 31 H 0.34 7.74 9.04 45.56 0.41 8.16 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.12 1.57 6.30 -52.49 -0.33 1.24 16 35 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -31.46 312.99 -6.92 -38.38 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.87 Total: 7.10 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -1.83 Total: -21.82 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.71 Total: -24.92 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.62 Total: -19.59 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.46 -6.92 -38.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.236 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds