Wall clock time and date at job start Mon Mar 30 2020 05:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47027 * 2 1 4 4 C 1.38161 * 120.02697 * 264.99945 * 3 2 1 5 5 C 1.38242 * 120.05640 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.94559 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47463 * 89.99344 * 6 5 4 8 8 H 1.08999 * 109.47269 * 305.00245 * 7 6 5 9 9 O 1.42903 * 109.46459 * 65.00139 * 7 6 5 10 10 C 1.50696 * 109.47222 * 184.99804 * 7 6 5 11 11 H 1.07991 * 120.00427 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99614 * 180.02562 * 10 7 6 13 13 N 1.31510 * 120.00261 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 119.99746 * 180.02562 * 12 10 7 15 15 H 1.48499 * 109.47404 * 90.00100 * 14 12 10 16 16 H 1.48506 * 109.47412 * 210.00385 * 14 12 10 17 17 H 1.48504 * 109.47304 * 330.00008 * 14 12 10 18 18 C 1.38285 * 120.11098 * 0.24484 * 5 4 3 19 19 C 1.38129 * 120.05672 * 359.46084 * 18 5 4 20 20 C 1.38710 * 120.02705 * 85.02568 * 3 2 1 21 21 O 1.35898 * 120.05714 * 359.97438 * 20 3 2 22 22 C 1.42896 * 116.99975 * 180.02562 * 21 20 3 23 23 H 1.09000 * 109.46882 * 300.00025 * 1 2 3 24 24 H 1.08997 * 109.47267 * 60.00052 * 1 2 3 25 25 H 1.09003 * 109.46923 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47565 * 239.99814 * 2 1 3 27 27 H 1.09007 * 109.47289 * 119.99980 * 2 1 3 28 28 H 1.08004 * 119.97604 * 0.02562 * 4 3 2 29 29 H 1.09005 * 109.47009 * 329.99744 * 6 5 4 30 30 H 1.08999 * 109.46930 * 209.99556 * 6 5 4 31 31 H 0.96700 * 114.00311 * 60.00313 * 9 7 6 32 32 H 0.97001 * 120.00070 * 180.02562 * 13 12 10 33 33 H 1.08000 * 119.97497 * 179.70352 * 18 5 4 34 34 H 1.07998 * 120.02904 * 180.24828 * 19 18 5 35 35 H 1.09002 * 109.47559 * 59.99941 * 22 21 20 36 36 H 1.09006 * 109.47299 * 180.02562 * 22 21 20 37 37 H 1.09001 * 109.47316 * 299.99856 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3610 2.0379 -1.1916 5 6 2.8224 3.3411 -1.1923 6 6 3.1808 4.0116 -2.4935 7 6 1.9475 4.7179 -3.0600 8 1 1.1291 4.0036 -3.1501 9 8 1.5605 5.7775 -2.1827 10 6 2.2723 5.2837 -4.4184 11 1 3.2595 5.1523 -4.8361 12 6 1.3091 5.9691 -5.1280 13 7 0.1071 6.1295 -4.6191 14 14 1.7115 6.6699 -6.8121 15 1 1.4057 5.6582 -7.8553 16 1 0.8956 7.8878 -7.0494 17 1 3.1533 7.0209 -6.8706 18 6 2.9609 4.0286 -0.0005 19 6 2.6278 3.4183 1.1930 20 6 2.1655 2.1100 1.1964 21 8 1.8428 1.5052 2.3698 22 6 2.0044 2.2754 3.5626 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 2.2575 1.5018 -2.1235 29 1 3.5290 3.2623 -3.2045 30 1 3.9705 4.7426 -2.3200 31 1 2.2421 6.4516 -2.0556 32 1 -0.5707 6.6114 -5.1185 33 1 3.3260 5.0450 -0.0031 34 1 2.7323 3.9570 2.1232 35 1 1.3762 3.1646 3.5089 36 1 1.7128 1.6756 4.4248 37 1 3.0479 2.5735 3.6640 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:50 Heat of formation + Delta-G solvation = -104.695741 kcal Electronic energy + Delta-G solvation = -18233.843810 eV Core-core repulsion = 15360.875191 eV Total energy + Delta-G solvation = -2872.968619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.20423 -38.91191 -37.46362 -35.13278 -34.22358 -32.72229 -30.50933 -29.65913 -28.20834 -26.48535 -24.79488 -23.32418 -22.43355 -21.06419 -18.97669 -18.82066 -17.38118 -16.66025 -16.60360 -16.39087 -15.88915 -15.53640 -15.09277 -14.96995 -14.73167 -14.58586 -14.23172 -13.85023 -13.26731 -13.18163 -12.88241 -12.82304 -12.71400 -12.56158 -12.36239 -12.25012 -11.96287 -11.81967 -11.66660 -11.42720 -11.03738 -10.68347 -10.19808 -9.67645 -8.80626 -8.10936 -6.38071 0.46270 0.57104 1.41564 1.41692 1.52814 2.40101 2.45653 2.85814 3.14057 3.83624 3.90290 4.05490 4.27406 4.28665 4.36696 4.42892 4.48956 4.54039 4.56083 4.60017 4.75161 4.77911 4.81754 4.90405 5.05084 5.07270 5.17039 5.27746 5.39971 5.47170 5.57423 5.62782 5.72770 5.92744 5.94245 6.11505 6.53898 6.75003 7.35442 7.59414 8.92581 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.033028 B = 0.005039 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.557920 B = 5555.289779 C = 5900.951181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.124 4.124 4 C -0.098 4.098 5 C -0.109 4.109 6 C -0.090 4.090 7 C 0.239 3.761 8 H 0.013 0.987 9 O -0.577 6.577 10 C -0.587 4.587 11 H 0.062 0.938 12 C 0.025 3.975 13 N -0.902 5.902 14 Si 0.960 3.040 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.262 1.262 18 C -0.084 4.084 19 C -0.205 4.205 20 C 0.106 3.894 21 O -0.326 6.326 22 C 0.019 3.981 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.125 0.875 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.354 0.646 32 H 0.260 0.740 33 H 0.128 0.872 34 H 0.148 0.852 35 H 0.055 0.945 36 H 0.121 0.879 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 -8.814 13.357 16.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.106 4.106 3 C -0.125 4.125 4 C -0.116 4.116 5 C -0.109 4.109 6 C -0.128 4.128 7 C 0.181 3.819 8 H 0.031 0.969 9 O -0.380 6.380 10 C -0.625 4.625 11 H 0.080 0.920 12 C -0.178 4.178 13 N -0.540 5.540 14 Si 0.784 3.216 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.186 1.186 18 C -0.102 4.102 19 C -0.224 4.224 20 C 0.061 3.939 21 O -0.240 6.240 22 C -0.076 4.076 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.143 0.857 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.199 0.801 32 H 0.069 0.931 33 H 0.146 0.854 34 H 0.165 0.835 35 H 0.074 0.926 36 H 0.140 0.860 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.502 -9.302 13.411 16.931 hybrid contribution 0.432 1.182 -1.025 1.623 sum 4.934 -8.120 12.386 15.611 Atomic orbital electron populations 1.21679 0.94801 1.02239 1.01081 1.20346 0.96153 0.91037 1.03082 1.19434 1.04486 0.98263 0.90271 1.20909 0.98703 0.94652 0.97313 1.19999 1.00886 0.94431 0.95571 1.21183 0.99078 0.99323 0.93229 1.19140 0.90614 0.85325 0.86798 0.96878 1.86519 1.45448 1.37375 1.68704 1.22135 0.98506 1.37584 1.04229 0.91976 1.25928 0.94554 0.95790 1.01481 1.70232 1.04159 1.40688 1.38873 0.85561 0.78633 0.77815 0.79572 1.19942 1.21018 1.18624 1.20933 0.98483 0.99449 0.91371 1.21391 1.06435 0.94832 0.99702 1.18856 0.97250 0.91718 0.86079 1.86007 1.82427 1.42228 1.13384 1.23299 1.02103 0.97401 0.84772 0.93429 0.94134 0.90527 0.90452 0.90283 0.85679 0.91405 0.91177 0.80127 0.93073 0.85396 0.83463 0.92597 0.86039 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.89 71.98 0.71 -2.85 16 2 C -0.07 -1.80 5.79 29.85 0.17 -1.62 16 3 C -0.12 -3.96 5.15 -19.77 -0.10 -4.07 16 4 C -0.10 -3.49 9.33 22.25 0.21 -3.28 16 5 C -0.11 -4.12 4.97 -19.85 -0.10 -4.22 16 6 C -0.09 -3.74 4.97 29.85 0.15 -3.59 16 7 C 0.24 12.41 2.81 29.85 0.08 12.49 16 8 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16 9 O -0.58 -30.27 12.23 -148.98 -1.82 -32.10 16 10 C -0.59 -32.43 8.76 25.60 0.22 -32.21 16 11 H 0.06 3.28 7.74 -2.92 -0.02 3.26 16 12 C 0.02 1.38 5.40 84.66 0.46 1.84 16 13 N -0.90 -54.87 12.84 21.45 0.28 -54.59 16 14 Si 0.96 43.53 29.54 68.60 2.03 45.56 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 18 C -0.08 -2.88 9.40 22.25 0.21 -2.67 16 19 C -0.21 -6.16 9.04 22.37 0.20 -5.96 16 20 C 0.11 3.25 6.66 22.51 0.15 3.40 16 21 O -0.33 -8.50 9.63 -92.41 -0.89 -9.39 16 22 C 0.02 0.32 9.81 113.37 1.11 1.43 16 23 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 1.82 8.05 -2.39 -0.02 1.80 16 27 H 0.08 1.90 7.69 -2.38 -0.02 1.88 16 28 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 29 H 0.07 2.72 8.08 -2.38 -0.02 2.70 16 30 H 0.07 2.69 8.08 -2.39 -0.02 2.68 16 31 H 0.35 16.22 9.04 -74.06 -0.67 15.55 16 32 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 34 H 0.15 3.48 6.30 -2.91 -0.02 3.46 16 35 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16 36 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.06 0.94 7.66 -2.39 -0.02 0.93 16 Total: -1.00 -67.64 312.99 3.45 -64.19 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.38 Total: 27.64 kcal Atomic # 6 Polarization: -44.79 SS G_CDS: 3.48 Total: -41.31 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.28 Total: -54.59 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -2.71 Total: -41.48 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -67.64 3.45 -64.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.504 kcal (2) G-P(sol) polarization free energy of solvation -67.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds