Wall clock time and date at job start Mon Mar 30 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47435 * 2 1 4 4 C 1.38292 * 119.94003 * 270.02023 * 3 2 1 5 5 C 1.38122 * 120.05262 * 179.97438 * 4 3 2 6 6 C 1.38758 * 119.94577 * 359.81325 * 5 4 3 7 7 O 1.35895 * 120.05336 * 180.23071 * 6 5 4 8 8 C 1.42895 * 117.00458 * 0.21187 * 7 6 5 9 9 C 1.38712 * 119.88751 * 0.43848 * 6 5 4 10 10 C 1.50697 * 120.02670 * 179.79579 * 9 6 5 11 11 C 1.53002 * 109.47354 * 84.72130 * 10 9 6 12 12 H 1.09000 * 109.46497 * 55.00130 * 11 10 9 13 13 O 1.42898 * 109.46916 * 295.00116 * 11 10 9 14 14 C 1.50696 * 109.46919 * 174.99865 * 11 10 9 15 15 H 1.07999 * 120.00202 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99746 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99573 * 0.27650 * 16 14 11 18 18 Si 1.86800 * 119.99781 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47035 * 60.00183 * 18 16 14 20 20 H 1.48503 * 109.46845 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47237 * 299.99939 * 18 16 14 22 22 C 1.38166 * 119.94296 * 359.51884 * 9 6 5 23 23 H 1.09000 * 109.47035 * 300.00654 * 1 2 3 24 24 H 1.09004 * 109.46923 * 60.00416 * 1 2 3 25 25 H 1.09002 * 109.47495 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47035 * 239.99346 * 2 1 3 27 27 H 1.09004 * 109.46923 * 119.99584 * 2 1 3 28 28 H 1.08002 * 119.97123 * 359.97438 * 4 3 2 29 29 H 1.08006 * 120.02544 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47086 * 299.99626 * 8 7 6 31 31 H 1.09000 * 109.47540 * 59.99740 * 8 7 6 32 32 H 1.08999 * 109.47421 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.47114 * 324.71931 * 10 9 6 34 34 H 1.09002 * 109.46822 * 204.72091 * 10 9 6 35 35 H 0.96695 * 114.00198 * 299.99297 * 13 11 10 36 36 H 0.97001 * 120.00651 * 359.71956 * 17 16 14 37 37 H 1.07998 * 119.97460 * 180.25849 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2621 2.0716 -1.1984 5 6 2.7221 3.3740 -1.2011 6 6 2.9500 4.0306 -0.0001 7 8 3.3981 5.3135 -0.0002 8 6 3.6089 5.9271 -1.2735 9 6 2.7238 3.3738 1.2005 10 6 2.9747 4.0823 2.5066 11 6 1.7413 4.9043 2.8861 12 1 0.8647 4.2567 2.9043 13 8 1.5465 5.9428 1.9240 14 6 1.9439 5.5140 4.2493 15 1 2.8605 5.3329 4.7910 16 6 0.9586 6.3021 4.8053 17 7 -0.1602 6.5173 4.1483 18 14 1.2095 7.0572 6.4954 19 1 2.4036 7.9396 6.4710 20 1 0.0124 7.8551 6.8636 21 1 1.4120 5.9777 7.4948 22 6 2.2628 2.0713 1.1979 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.0817 1.5611 -2.1329 29 1 2.9010 3.8820 -2.1373 30 1 4.3512 5.3576 -1.8327 31 1 2.6708 5.9445 -1.8282 32 1 3.9660 6.9470 -1.1307 33 1 3.8343 4.7443 2.4016 34 1 3.1753 3.3472 3.2861 35 1 2.2890 6.5583 1.8538 36 1 -0.2906 6.1249 3.2709 37 1 2.0826 1.5608 2.1324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:12 Heat of formation + Delta-G solvation = -89.709882 kcal Electronic energy + Delta-G solvation = -18603.826009 eV Core-core repulsion = 15731.507225 eV Total energy + Delta-G solvation = -2872.318784 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.95448 -37.47485 -36.12035 -33.51864 -32.01790 -31.80108 -28.88415 -28.11685 -26.81434 -24.58811 -23.37055 -22.00153 -21.01303 -19.71891 -17.64760 -17.12882 -16.16869 -15.44935 -15.11413 -14.52153 -14.20789 -13.90988 -13.85183 -13.69577 -13.19564 -12.98559 -12.79931 -12.54176 -12.23486 -11.73637 -11.72501 -11.54833 -11.08115 -10.87567 -10.74920 -10.57659 -10.43230 -10.27225 -10.04895 -9.99641 -9.27029 -8.47182 -8.38130 -7.90871 -7.47568 -6.25958 -4.08548 1.70996 1.80328 3.46171 3.47866 3.66914 3.67926 4.09673 4.58033 4.96029 5.00007 5.14544 5.22190 5.32295 5.38572 5.44570 5.47666 5.63458 5.64734 5.65881 5.79480 5.93428 5.96951 6.08208 6.13334 6.23948 6.29630 6.44996 6.59478 6.66339 6.85950 6.91649 6.97009 7.22021 7.65736 7.82827 8.12894 8.45215 8.95165 9.32698 9.77694 11.13535 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.006550 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.724932 B = 4273.778536 C = 5111.428993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.076 4.076 3 C -0.124 4.124 4 C -0.096 4.096 5 C -0.211 4.211 6 C 0.138 3.862 7 O -0.299 6.299 8 C 0.030 3.970 9 C -0.085 4.085 10 C -0.094 4.094 11 C 0.223 3.777 12 H 0.044 0.956 13 O -0.574 6.574 14 C -0.648 4.648 15 H 0.048 0.952 16 C 0.033 3.967 17 N -0.895 5.895 18 Si 1.066 2.934 19 H -0.288 1.288 20 H -0.283 1.283 21 H -0.289 1.289 22 C -0.085 4.085 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.353 0.647 36 H 0.284 0.716 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.066 -8.470 -11.018 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.124 4.124 4 C -0.114 4.114 5 C -0.230 4.230 6 C 0.092 3.908 7 O -0.212 6.212 8 C -0.065 4.065 9 C -0.086 4.086 10 C -0.132 4.132 11 C 0.165 3.835 12 H 0.062 0.938 13 O -0.379 6.379 14 C -0.685 4.685 15 H 0.066 0.934 16 C -0.175 4.175 17 N -0.530 5.530 18 Si 0.894 3.106 19 H -0.215 1.215 20 H -0.208 1.208 21 H -0.215 1.215 22 C -0.103 4.103 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.139 0.861 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.198 0.802 36 H 0.096 0.904 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.804 -7.706 -9.807 13.366 hybrid contribution 1.297 -0.731 -1.382 2.031 sum 6.101 -8.437 -11.189 15.284 Atomic orbital electron populations 1.21768 0.95117 1.01140 1.02464 1.20412 0.95926 0.92870 1.02099 1.19671 1.03180 0.96555 0.93044 1.20595 0.99602 0.94054 0.97145 1.21103 1.08356 0.96832 0.96663 1.18761 0.94916 0.83735 0.93343 1.86142 1.80392 1.24279 1.30345 1.22956 1.00359 0.98173 0.85045 1.19558 1.00997 0.93746 0.94308 1.21253 1.01641 0.99012 0.91272 1.19425 0.91211 0.85631 0.87184 0.93780 1.86430 1.45688 1.42860 1.62886 1.22495 1.05797 1.36680 1.03575 0.93387 1.25763 0.92735 0.94898 1.04137 1.70619 1.25153 1.41533 1.15681 0.83623 0.75776 0.76303 0.74878 1.21494 1.20831 1.21525 1.20759 0.98435 0.93555 0.97540 0.92306 0.92759 0.92845 0.91701 0.91413 0.86695 0.86148 0.93557 0.93034 0.88612 0.91658 0.91703 0.80172 0.90424 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.90 37.16 0.37 -1.35 16 2 C -0.08 -0.91 6.06 -27.88 -0.17 -1.08 16 3 C -0.12 -1.88 5.14 -104.60 -0.54 -2.42 16 4 C -0.10 -1.40 9.69 -39.60 -0.38 -1.79 16 5 C -0.21 -3.30 9.04 -39.43 -0.36 -3.66 16 6 C 0.14 2.54 6.33 -39.21 -0.25 2.29 16 7 O -0.30 -5.33 7.99 -34.50 -0.28 -5.61 16 8 C 0.03 0.39 9.81 101.05 0.99 1.38 16 9 C -0.09 -1.68 5.05 -104.47 -0.53 -2.21 16 10 C -0.09 -2.06 4.72 -27.88 -0.13 -2.19 16 11 C 0.22 5.83 2.41 -27.88 -0.07 5.77 16 12 H 0.04 1.27 8.00 -51.93 -0.42 0.85 16 13 O -0.57 -15.07 10.50 -50.32 -0.53 -15.60 16 14 C -0.65 -18.51 8.76 -34.44 -0.30 -18.81 16 15 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 16 C 0.03 0.97 5.40 -17.82 -0.10 0.87 16 17 N -0.90 -28.00 13.53 55.43 0.75 -27.25 16 18 Si 1.07 25.51 29.90 -169.99 -5.08 20.43 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.08 -1.49 9.33 -39.61 -0.37 -1.86 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 27 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.12 1.57 6.30 -52.48 -0.33 1.24 16 30 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 31 H 0.05 0.63 7.67 -51.93 -0.40 0.23 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.43 7.70 -51.93 -0.40 1.03 16 34 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 35 H 0.35 8.68 8.42 45.56 0.38 9.07 16 36 H 0.28 9.09 6.48 -40.82 -0.26 8.82 16 37 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 307.74 15.07 4.64 4.64 Total: -1.00 -32.45 307.74 -7.15 -39.60 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.82 Total: 8.85 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -1.83 Total: -25.06 kcal Atomic # 7 Polarization: -28.00 SS G_CDS: 0.75 Total: -27.25 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.80 Total: -21.21 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.45 -7.15 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.113 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds