Wall clock time and date at job start Mon Mar 30 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47435 * 2 1 4 4 C 1.38292 * 119.94003 * 270.02023 * 3 2 1 5 5 C 1.38122 * 120.05262 * 179.97438 * 4 3 2 6 6 C 1.38758 * 119.94577 * 359.81325 * 5 4 3 7 7 O 1.35895 * 120.05336 * 180.23071 * 6 5 4 8 8 C 1.42895 * 117.00458 * 0.21187 * 7 6 5 9 9 C 1.38712 * 119.88751 * 0.43848 * 6 5 4 10 10 C 1.50697 * 120.02670 * 179.79579 * 9 6 5 11 11 C 1.53002 * 109.47354 * 84.72130 * 10 9 6 12 12 H 1.09000 * 109.46497 * 55.00130 * 11 10 9 13 13 O 1.42898 * 109.46916 * 295.00116 * 11 10 9 14 14 C 1.50696 * 109.46919 * 174.99865 * 11 10 9 15 15 H 1.07999 * 120.00202 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99746 * 180.02562 * 14 11 10 17 17 N 1.31514 * 119.99573 * 0.27650 * 16 14 11 18 18 Si 1.86800 * 119.99781 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47035 * 60.00183 * 18 16 14 20 20 H 1.48503 * 109.46845 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47237 * 299.99939 * 18 16 14 22 22 C 1.38166 * 119.94296 * 359.51884 * 9 6 5 23 23 H 1.09000 * 109.47035 * 300.00654 * 1 2 3 24 24 H 1.09004 * 109.46923 * 60.00416 * 1 2 3 25 25 H 1.09002 * 109.47495 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47035 * 239.99346 * 2 1 3 27 27 H 1.09004 * 109.46923 * 119.99584 * 2 1 3 28 28 H 1.08002 * 119.97123 * 359.97438 * 4 3 2 29 29 H 1.08006 * 120.02544 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47086 * 299.99626 * 8 7 6 31 31 H 1.09000 * 109.47540 * 59.99740 * 8 7 6 32 32 H 1.08999 * 109.47421 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.47114 * 324.71931 * 10 9 6 34 34 H 1.09002 * 109.46822 * 204.72091 * 10 9 6 35 35 H 0.96695 * 114.00198 * 299.99297 * 13 11 10 36 36 H 0.97001 * 120.00651 * 359.71956 * 17 16 14 37 37 H 1.07998 * 119.97460 * 180.25849 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2621 2.0716 -1.1984 5 6 2.7221 3.3740 -1.2011 6 6 2.9500 4.0306 -0.0001 7 8 3.3981 5.3135 -0.0002 8 6 3.6089 5.9271 -1.2735 9 6 2.7238 3.3738 1.2005 10 6 2.9747 4.0823 2.5066 11 6 1.7413 4.9043 2.8861 12 1 0.8647 4.2567 2.9043 13 8 1.5465 5.9428 1.9240 14 6 1.9439 5.5140 4.2493 15 1 2.8605 5.3329 4.7910 16 6 0.9586 6.3021 4.8053 17 7 -0.1602 6.5173 4.1483 18 14 1.2095 7.0572 6.4954 19 1 2.4036 7.9396 6.4710 20 1 0.0124 7.8551 6.8636 21 1 1.4120 5.9777 7.4948 22 6 2.2628 2.0713 1.1979 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.0817 1.5611 -2.1329 29 1 2.9010 3.8820 -2.1373 30 1 4.3512 5.3576 -1.8327 31 1 2.6708 5.9445 -1.8282 32 1 3.9660 6.9470 -1.1307 33 1 3.8343 4.7443 2.4016 34 1 3.1753 3.3472 3.2861 35 1 2.2890 6.5583 1.8538 36 1 -0.2906 6.1249 3.2709 37 1 2.0826 1.5608 2.1324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:11 Heat of formation + Delta-G solvation = -110.008320 kcal Electronic energy + Delta-G solvation = -18604.706215 eV Core-core repulsion = 15731.507225 eV Total energy + Delta-G solvation = -2873.198990 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23859 -38.69897 -38.10800 -34.76772 -34.20528 -33.25214 -30.20098 -29.66127 -27.96143 -26.55631 -24.42801 -23.76110 -22.51049 -21.08691 -19.37818 -18.82380 -17.45427 -16.99031 -16.52649 -15.96751 -15.71545 -15.62432 -15.33985 -15.02798 -14.69968 -14.40777 -14.32192 -14.06993 -13.59550 -13.24692 -12.89127 -12.79836 -12.64412 -12.46236 -12.12733 -11.94894 -11.90163 -11.77888 -11.71115 -11.53534 -11.26311 -10.61954 -10.19737 -9.62999 -8.84338 -8.58660 -6.44609 0.41497 0.53792 1.52299 1.60792 1.80349 2.51543 2.56987 2.82202 3.18374 3.80438 3.86709 3.95305 4.05851 4.22744 4.33115 4.37742 4.41844 4.48924 4.53115 4.59614 4.67205 4.69625 4.73050 4.87381 4.97858 5.05786 5.07428 5.22636 5.36251 5.39960 5.43831 5.64713 5.73833 5.89977 5.96863 6.15025 6.56565 6.60736 7.23558 7.53113 8.76507 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021926 B = 0.006550 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.724932 B = 4273.778536 C = 5111.428993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.125 4.125 4 C -0.089 4.089 5 C -0.211 4.211 6 C 0.121 3.879 7 O -0.328 6.328 8 C 0.022 3.978 9 C -0.124 4.124 10 C -0.076 4.076 11 C 0.225 3.775 12 H 0.010 0.990 13 O -0.580 6.580 14 C -0.659 4.659 15 H 0.049 0.951 16 C -0.019 4.019 17 N -0.922 5.922 18 Si 1.117 2.883 19 H -0.269 1.269 20 H -0.285 1.285 21 H -0.270 1.270 22 C -0.099 4.099 23 H 0.035 0.965 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.359 0.641 36 H 0.265 0.735 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 -9.412 -12.236 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.126 4.126 4 C -0.107 4.107 5 C -0.229 4.229 6 C 0.075 3.925 7 O -0.241 6.241 8 C -0.073 4.073 9 C -0.125 4.125 10 C -0.114 4.114 11 C 0.168 3.832 12 H 0.028 0.972 13 O -0.384 6.384 14 C -0.697 4.697 15 H 0.068 0.932 16 C -0.221 4.221 17 N -0.557 5.557 18 Si 0.938 3.062 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.117 4.117 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.170 0.830 29 H 0.167 0.833 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.204 0.796 36 H 0.076 0.924 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.644 -8.663 -11.045 15.129 hybrid contribution 1.056 -0.482 -1.120 1.613 sum 6.700 -9.145 -12.165 16.628 Atomic orbital electron populations 1.21761 0.94939 1.02344 1.01340 1.20483 0.95920 0.90947 1.03705 1.20047 1.02113 0.98072 0.92318 1.21085 0.97563 0.93674 0.98373 1.21459 1.07427 0.97324 0.96729 1.18958 0.95468 0.84221 0.93841 1.86086 1.80485 1.24316 1.33237 1.23247 1.01301 0.99076 0.83639 1.19493 1.04255 0.95004 0.93713 1.20880 0.99052 0.98360 0.93074 1.19245 0.91752 0.85618 0.86607 0.97249 1.86379 1.46162 1.43205 1.62702 1.22900 1.05704 1.36350 1.04715 0.93225 1.27365 0.92009 0.95117 1.07573 1.70772 1.26575 1.43104 1.15292 0.82967 0.76270 0.76298 0.70652 1.19401 1.21002 1.19492 1.20907 0.98741 0.93186 0.98833 0.94611 0.92709 0.90511 0.89028 0.90910 0.82998 0.83328 0.91287 0.92640 0.87059 0.92232 0.91900 0.79573 0.92427 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.90 71.98 0.71 -2.41 16 2 C -0.07 -1.57 6.06 29.85 0.18 -1.38 16 3 C -0.13 -3.59 5.14 -19.85 -0.10 -3.69 16 4 C -0.09 -2.34 9.69 22.25 0.22 -2.13 16 5 C -0.21 -6.15 9.04 22.37 0.20 -5.95 16 6 C 0.12 4.41 6.33 22.51 0.14 4.55 16 7 O -0.33 -11.67 7.99 -77.95 -0.62 -12.30 16 8 C 0.02 0.52 9.81 113.37 1.11 1.64 16 9 C -0.12 -5.00 5.05 -19.77 -0.10 -5.10 16 10 C -0.08 -3.46 4.72 29.85 0.14 -3.32 16 11 C 0.23 12.30 2.41 29.85 0.07 12.37 16 12 H 0.01 0.59 8.00 -2.39 -0.02 0.57 16 13 O -0.58 -31.58 10.50 -134.56 -1.41 -32.99 16 14 C -0.66 -38.55 8.76 25.60 0.22 -38.32 16 15 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 16 C -0.02 -1.14 5.40 84.66 0.46 -0.68 16 17 N -0.92 -59.15 13.53 21.45 0.29 -58.86 16 18 Si 1.12 51.27 29.90 68.60 2.05 53.32 16 19 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 C -0.10 -3.49 9.33 22.25 0.21 -3.28 16 23 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 27 H 0.07 1.49 8.08 -2.38 -0.02 1.47 16 28 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.15 3.38 6.30 -2.91 -0.02 3.36 16 30 H 0.07 1.32 7.65 -2.39 -0.02 1.30 16 31 H 0.05 1.27 7.67 -2.39 -0.02 1.25 16 32 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.06 2.71 7.70 -2.39 -0.02 2.69 16 34 H 0.06 2.78 8.05 -2.39 -0.02 2.76 16 35 H 0.36 18.27 8.42 -74.06 -0.62 17.64 16 36 H 0.27 17.70 6.48 -92.71 -0.60 17.10 16 37 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -71.87 307.74 4.37 -67.50 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.60 Total: 31.03 kcal Atomic # 6 Polarization: -51.18 SS G_CDS: 3.47 Total: -47.71 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.29 Total: -58.86 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -2.03 Total: -45.29 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.05 Total: 53.32 kcal Total: -71.87 4.37 -67.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.506 kcal (2) G-P(sol) polarization free energy of solvation -71.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds