Wall clock time and date at job start Mon Mar 30 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47109 * 2 1 4 4 C 1.38289 * 119.93791 * 270.24911 * 3 2 1 5 5 C 1.38125 * 120.05202 * 180.25765 * 4 3 2 6 6 C 1.38755 * 119.93999 * 359.48967 * 5 4 3 7 7 O 1.35906 * 120.05296 * 180.27973 * 6 5 4 8 8 C 1.42901 * 117.00155 * 359.97438 * 7 6 5 9 9 C 1.38709 * 119.89505 * 0.25905 * 6 5 4 10 10 C 1.50693 * 120.03060 * 179.97438 * 9 6 5 11 11 C 1.53006 * 109.47319 * 84.99917 * 10 9 6 12 12 H 1.08998 * 109.46527 * 305.00089 * 11 10 9 13 13 O 1.42897 * 109.46936 * 64.99908 * 11 10 9 14 14 C 1.50700 * 109.47018 * 185.00190 * 11 10 9 15 15 H 1.07994 * 120.00122 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99476 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99719 * 179.97438 * 16 14 11 18 18 Si 1.86798 * 120.00400 * 359.97438 * 16 14 11 19 19 H 1.48508 * 109.46917 * 90.00333 * 18 16 14 20 20 H 1.48506 * 109.47235 * 210.00043 * 18 16 14 21 21 H 1.48501 * 109.47274 * 330.00470 * 18 16 14 22 22 C 1.38167 * 119.93745 * 359.97438 * 9 6 5 23 23 H 1.08999 * 109.46962 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47176 * 300.00614 * 1 2 3 25 25 H 1.09001 * 109.46837 * 60.00353 * 1 2 3 26 26 H 1.08993 * 109.47471 * 239.99646 * 2 1 3 27 27 H 1.09001 * 109.46837 * 119.99647 * 2 1 3 28 28 H 1.07995 * 119.98087 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.03152 * 179.77429 * 5 4 3 30 30 H 1.09006 * 109.47043 * 60.00389 * 8 7 6 31 31 H 1.08997 * 109.47434 * 180.02562 * 8 7 6 32 32 H 1.09003 * 109.47208 * 300.00726 * 8 7 6 33 33 H 1.09004 * 109.47143 * 204.99506 * 10 9 6 34 34 H 1.09002 * 109.47393 * 325.00161 * 10 9 6 35 35 H 0.96698 * 114.00017 * 60.00214 * 13 11 10 36 36 H 0.96996 * 120.00019 * 179.97438 * 17 16 14 37 37 H 1.08006 * 119.96903 * 179.97438 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2575 2.0733 -1.1984 5 6 2.7229 3.3737 -1.2011 6 6 2.9545 4.0290 -0.0002 7 8 3.4071 5.3104 -0.0002 8 6 3.6235 5.9220 -1.2735 9 6 2.7230 3.3741 1.2005 10 6 2.9740 4.0826 2.5066 11 6 1.7406 4.9047 2.8862 12 1 1.4873 5.5786 2.0678 13 8 0.6418 4.0264 3.1376 14 6 2.0350 5.7087 4.1263 15 1 3.0046 5.6400 4.5969 16 6 1.0661 6.5313 4.6606 17 7 1.3229 7.2326 5.7432 18 14 -0.6112 6.6496 3.8471 19 1 -1.5155 5.6235 4.4258 20 1 -1.1811 8.0007 4.0820 21 1 -0.4706 6.4186 2.3869 22 6 2.2619 2.0716 1.1978 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0728 1.5644 -2.1328 29 1 2.9021 3.8817 -2.1372 30 1 2.6869 5.9422 -1.8308 31 1 3.9837 6.9408 -1.1308 32 1 4.3652 5.3493 -1.8303 33 1 3.1745 3.3475 3.2860 34 1 3.8335 4.7446 2.4016 35 1 0.7973 3.3973 3.8553 36 1 0.6414 7.8116 6.1189 37 1 2.0819 1.5611 2.1324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:14 Heat of formation + Delta-G solvation = -80.915423 kcal Electronic energy + Delta-G solvation = -18578.224199 eV Core-core repulsion = 15706.286772 eV Total energy + Delta-G solvation = -2871.937427 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.01997 -37.55840 -36.29208 -33.55529 -32.19340 -31.90007 -29.04888 -28.38375 -26.98092 -25.24224 -23.40716 -21.83884 -20.93263 -19.71829 -17.75012 -17.08510 -16.21252 -15.49603 -15.02482 -14.75599 -14.28265 -14.20773 -14.02024 -13.82525 -13.27879 -13.05647 -12.77899 -12.62051 -12.38578 -11.88137 -11.73657 -11.50422 -11.16883 -10.93854 -10.89594 -10.77415 -10.61373 -10.50110 -10.12838 -9.77562 -9.20751 -8.61733 -8.59544 -8.26616 -7.58202 -6.07260 -4.17579 1.68130 1.73687 3.49356 3.52087 3.60603 3.67175 4.04597 4.56204 4.92626 4.97135 5.08768 5.17860 5.23785 5.27878 5.31733 5.45965 5.59540 5.60597 5.61567 5.75636 5.89772 5.91971 6.00844 6.06682 6.17650 6.28441 6.33818 6.48913 6.61006 6.74517 6.89177 7.00349 7.15624 7.51517 7.64865 7.76499 8.34859 8.89188 9.08709 9.57380 11.03345 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.007438 C = 0.006186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.372938 B = 3763.435537 C = 4525.316227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.123 4.123 4 C -0.096 4.096 5 C -0.209 4.209 6 C 0.119 3.881 7 O -0.305 6.305 8 C 0.029 3.971 9 C -0.083 4.083 10 C -0.091 4.091 11 C 0.200 3.800 12 H 0.061 0.939 13 O -0.585 6.585 14 C -0.557 4.557 15 H 0.074 0.926 16 C 0.081 3.919 17 N -0.896 5.896 18 Si 0.913 3.087 19 H -0.279 1.279 20 H -0.306 1.306 21 H -0.268 1.268 22 C -0.071 4.071 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.358 0.642 36 H 0.264 0.736 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.260 -10.843 -14.474 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.123 4.123 4 C -0.114 4.114 5 C -0.227 4.227 6 C 0.074 3.926 7 O -0.218 6.218 8 C -0.067 4.067 9 C -0.084 4.084 10 C -0.129 4.129 11 C 0.143 3.857 12 H 0.079 0.921 13 O -0.391 6.391 14 C -0.594 4.594 15 H 0.092 0.908 16 C -0.123 4.123 17 N -0.533 5.533 18 Si 0.743 3.257 19 H -0.205 1.205 20 H -0.235 1.235 21 H -0.193 1.193 22 C -0.089 4.089 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.139 0.861 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.204 0.796 36 H 0.074 0.926 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.988 -10.245 -14.689 18.019 hybrid contribution -0.573 -0.029 -0.227 0.617 sum 1.414 -10.275 -14.916 18.168 Atomic orbital electron populations 1.21765 0.95081 1.01105 1.02520 1.20414 0.95948 0.92833 1.02115 1.19710 1.02927 0.96544 0.93101 1.20603 0.99568 0.94006 0.97226 1.21092 1.08139 0.96917 0.96579 1.18906 0.95927 0.84056 0.93682 1.86193 1.80541 1.24439 1.30657 1.22996 1.00424 0.98408 0.84844 1.19554 1.00862 0.93980 0.94001 1.21150 1.01435 0.98893 0.91377 1.19857 0.82047 0.87366 0.96431 0.92116 1.86396 1.44301 1.51201 1.57198 1.21596 1.01491 1.25763 1.10559 0.90819 1.25022 0.99271 0.93779 0.94258 1.69966 1.34781 1.27340 1.21223 0.86253 0.83490 0.75210 0.80741 1.20501 1.23484 1.19330 1.20718 0.97442 0.93317 0.97464 0.92908 0.92129 0.92851 0.91748 0.91359 0.86669 0.86093 0.93079 0.88422 0.93218 0.91748 0.90529 0.79619 0.92649 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.89 37.16 0.37 -1.25 16 2 C -0.08 -0.85 6.06 -27.88 -0.17 -1.02 16 3 C -0.12 -1.75 5.13 -104.60 -0.54 -2.29 16 4 C -0.10 -1.33 9.69 -39.60 -0.38 -1.71 16 5 C -0.21 -3.11 9.04 -39.43 -0.36 -3.46 16 6 C 0.12 2.12 6.66 -39.22 -0.26 1.86 16 7 O -0.31 -5.44 9.63 -19.44 -0.19 -5.62 16 8 C 0.03 0.36 9.81 101.05 0.99 1.35 16 9 C -0.08 -1.55 4.93 -104.48 -0.51 -2.07 16 10 C -0.09 -1.88 4.69 -27.88 -0.13 -2.02 16 11 C 0.20 4.91 2.29 -27.88 -0.06 4.84 16 12 H 0.06 1.62 7.20 -51.93 -0.37 1.25 16 13 O -0.59 -13.71 10.73 -35.23 -0.38 -14.09 16 14 C -0.56 -15.88 9.34 -34.44 -0.32 -16.20 16 15 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 16 C 0.08 2.38 5.47 -17.82 -0.10 2.29 16 17 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 18 Si 0.91 24.06 26.18 -169.99 -4.45 19.61 16 19 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.31 -7.98 7.11 56.52 0.40 -7.57 16 21 H -0.27 -7.13 6.54 56.52 0.37 -6.76 16 22 C -0.07 -1.17 9.27 -39.61 -0.37 -1.53 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.12 1.48 6.30 -52.49 -0.33 1.15 16 30 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 33 H 0.06 1.25 8.05 -51.93 -0.42 0.83 16 34 H 0.08 1.64 7.69 -51.93 -0.40 1.24 16 35 H 0.36 7.28 9.04 45.56 0.41 7.70 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 37 H 0.12 1.87 8.06 -52.48 -0.42 1.44 16 LS Contribution 308.29 15.07 4.65 4.65 Total: -1.00 -32.96 308.29 -6.31 -39.27 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.87 Total: 4.40 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -1.84 Total: -21.22 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.77 Total: -26.99 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.57 Total: -19.71 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -4.45 Total: 19.61 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.96 -6.31 -39.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.646 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds