Wall clock time and date at job start Mon Mar 30 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47109 * 2 1 4 4 C 1.38289 * 119.93791 * 270.24911 * 3 2 1 5 5 C 1.38125 * 120.05202 * 180.25765 * 4 3 2 6 6 C 1.38755 * 119.93999 * 359.48967 * 5 4 3 7 7 O 1.35906 * 120.05296 * 180.27973 * 6 5 4 8 8 C 1.42901 * 117.00155 * 359.97438 * 7 6 5 9 9 C 1.38709 * 119.89505 * 0.25905 * 6 5 4 10 10 C 1.50693 * 120.03060 * 179.97438 * 9 6 5 11 11 C 1.53006 * 109.47319 * 84.99917 * 10 9 6 12 12 H 1.08998 * 109.46527 * 305.00089 * 11 10 9 13 13 O 1.42897 * 109.46936 * 64.99908 * 11 10 9 14 14 C 1.50700 * 109.47018 * 185.00190 * 11 10 9 15 15 H 1.07994 * 120.00122 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99476 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99719 * 179.97438 * 16 14 11 18 18 Si 1.86798 * 120.00400 * 359.97438 * 16 14 11 19 19 H 1.48508 * 109.46917 * 90.00333 * 18 16 14 20 20 H 1.48506 * 109.47235 * 210.00043 * 18 16 14 21 21 H 1.48501 * 109.47274 * 330.00470 * 18 16 14 22 22 C 1.38167 * 119.93745 * 359.97438 * 9 6 5 23 23 H 1.08999 * 109.46962 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47176 * 300.00614 * 1 2 3 25 25 H 1.09001 * 109.46837 * 60.00353 * 1 2 3 26 26 H 1.08993 * 109.47471 * 239.99646 * 2 1 3 27 27 H 1.09001 * 109.46837 * 119.99647 * 2 1 3 28 28 H 1.07995 * 119.98087 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.03152 * 179.77429 * 5 4 3 30 30 H 1.09006 * 109.47043 * 60.00389 * 8 7 6 31 31 H 1.08997 * 109.47434 * 180.02562 * 8 7 6 32 32 H 1.09003 * 109.47208 * 300.00726 * 8 7 6 33 33 H 1.09004 * 109.47143 * 204.99506 * 10 9 6 34 34 H 1.09002 * 109.47393 * 325.00161 * 10 9 6 35 35 H 0.96698 * 114.00017 * 60.00214 * 13 11 10 36 36 H 0.96996 * 120.00019 * 179.97438 * 17 16 14 37 37 H 1.08006 * 119.96903 * 179.97438 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2575 2.0733 -1.1984 5 6 2.7229 3.3737 -1.2011 6 6 2.9545 4.0290 -0.0002 7 8 3.4071 5.3104 -0.0002 8 6 3.6235 5.9220 -1.2735 9 6 2.7230 3.3741 1.2005 10 6 2.9740 4.0826 2.5066 11 6 1.7406 4.9047 2.8862 12 1 1.4873 5.5786 2.0678 13 8 0.6418 4.0264 3.1376 14 6 2.0350 5.7087 4.1263 15 1 3.0046 5.6400 4.5969 16 6 1.0661 6.5313 4.6606 17 7 1.3229 7.2326 5.7432 18 14 -0.6112 6.6496 3.8471 19 1 -1.5155 5.6235 4.4258 20 1 -1.1811 8.0007 4.0820 21 1 -0.4706 6.4186 2.3869 22 6 2.2619 2.0716 1.1978 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0728 1.5644 -2.1328 29 1 2.9021 3.8817 -2.1372 30 1 2.6869 5.9422 -1.8308 31 1 3.9837 6.9408 -1.1308 32 1 4.3652 5.3493 -1.8303 33 1 3.1745 3.3475 3.2860 34 1 3.8335 4.7446 2.4016 35 1 0.7973 3.3973 3.8553 36 1 0.6414 7.8116 6.1189 37 1 2.0819 1.5611 2.1324 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:14 Heat of formation + Delta-G solvation = -103.312315 kcal Electronic energy + Delta-G solvation = -18579.195401 eV Core-core repulsion = 15706.286772 eV Total energy + Delta-G solvation = -2872.908629 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.22642 -38.75449 -38.10040 -34.70502 -34.44505 -33.21365 -30.48767 -29.74171 -28.08701 -27.03727 -24.38504 -23.30951 -22.48833 -21.06055 -19.40242 -18.72602 -17.43053 -16.90207 -16.70622 -16.27305 -15.98292 -15.61578 -15.28573 -14.98821 -14.90830 -14.44819 -14.08857 -14.00669 -13.66423 -13.32489 -13.03056 -12.90380 -12.78118 -12.63481 -12.41764 -11.91891 -11.82946 -11.69226 -11.67250 -11.48841 -11.23265 -10.88842 -10.48322 -9.61781 -8.82854 -8.37744 -6.51253 0.48691 0.55333 1.36353 1.39461 1.55327 2.36235 2.51390 2.85386 2.96606 3.84084 3.90874 3.97889 4.06019 4.24665 4.38270 4.39574 4.42166 4.50006 4.58817 4.65224 4.69181 4.71527 4.74989 4.89366 5.02963 5.11908 5.16324 5.32710 5.38029 5.45558 5.45934 5.53227 5.68884 5.80604 6.01054 6.08149 6.58326 6.61484 7.16219 7.31910 8.76667 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.007438 C = 0.006186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.372938 B = 3763.435537 C = 4525.316227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C -0.123 4.123 4 C -0.090 4.090 5 C -0.208 4.208 6 C 0.098 3.902 7 O -0.341 6.341 8 C 0.020 3.980 9 C -0.117 4.117 10 C -0.077 4.077 11 C 0.213 3.787 12 H 0.039 0.961 13 O -0.585 6.585 14 C -0.561 4.561 15 H 0.041 0.959 16 C 0.031 3.969 17 N -0.936 5.936 18 Si 0.974 3.026 19 H -0.271 1.271 20 H -0.300 1.300 21 H -0.272 1.272 22 C -0.080 4.080 23 H 0.073 0.927 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.373 0.627 36 H 0.268 0.732 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -12.748 -16.977 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.124 4.124 4 C -0.108 4.108 5 C -0.226 4.226 6 C 0.053 3.947 7 O -0.255 6.255 8 C -0.075 4.075 9 C -0.118 4.118 10 C -0.114 4.114 11 C 0.156 3.844 12 H 0.057 0.943 13 O -0.393 6.393 14 C -0.598 4.598 15 H 0.060 0.940 16 C -0.169 4.169 17 N -0.576 5.576 18 Si 0.802 3.198 19 H -0.196 1.196 20 H -0.227 1.227 21 H -0.197 1.197 22 C -0.098 4.098 23 H 0.092 0.908 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.168 0.832 29 H 0.166 0.834 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.220 0.780 36 H 0.077 0.923 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.032 -12.163 -17.192 21.085 hybrid contribution -0.205 0.523 0.510 0.759 sum 0.827 -11.640 -16.682 20.358 Atomic orbital electron populations 1.21751 0.94856 1.02193 1.01523 1.20477 0.95971 0.90972 1.03631 1.20084 1.01848 0.97975 0.92464 1.21073 0.97658 0.93572 0.98497 1.21417 1.07238 0.97397 0.96547 1.19163 0.96736 0.84364 0.94467 1.86137 1.80829 1.24894 1.33676 1.23287 1.01661 0.99082 0.83441 1.19463 1.03943 0.95255 0.93127 1.20821 0.98771 0.98364 0.93480 1.19504 0.83825 0.87519 0.93570 0.94293 1.86313 1.43759 1.51246 1.57938 1.21909 1.00068 1.26167 1.11678 0.94035 1.25782 1.02726 0.93631 0.94726 1.70067 1.36172 1.28582 1.22766 0.85301 0.79556 0.75613 0.79379 1.19605 1.22748 1.19721 1.20879 0.97361 0.92646 0.98883 0.90836 0.94045 0.92913 0.89442 0.90711 0.83213 0.83434 0.92070 0.87304 0.91034 0.91118 0.92395 0.77955 0.92266 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.89 71.98 0.71 -2.04 16 2 C -0.07 -1.39 6.06 29.85 0.18 -1.21 16 3 C -0.12 -3.19 5.13 -19.85 -0.10 -3.29 16 4 C -0.09 -2.17 9.69 22.25 0.22 -1.96 16 5 C -0.21 -5.64 9.04 22.37 0.20 -5.44 16 6 C 0.10 3.41 6.66 22.51 0.15 3.56 16 7 O -0.34 -12.21 9.63 -92.49 -0.89 -13.10 16 8 C 0.02 0.46 9.81 113.37 1.11 1.57 16 9 C -0.12 -4.36 4.93 -19.77 -0.10 -4.46 16 10 C -0.08 -3.27 4.69 29.85 0.14 -3.13 16 11 C 0.21 10.65 2.29 29.85 0.07 10.72 16 12 H 0.04 2.13 7.20 -2.39 -0.02 2.11 16 13 O -0.59 -27.13 10.73 -148.98 -1.60 -28.73 16 14 C -0.56 -32.96 9.34 25.60 0.24 -32.72 16 15 H 0.04 2.65 7.99 -2.91 -0.02 2.62 16 16 C 0.03 1.88 5.47 84.65 0.46 2.34 16 17 N -0.94 -59.30 13.96 21.45 0.30 -59.00 16 18 Si 0.97 49.97 26.18 68.60 1.80 51.76 16 19 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 21 H -0.27 -14.05 6.54 99.48 0.65 -13.39 16 22 C -0.08 -2.51 9.27 22.25 0.21 -2.30 16 23 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 1.29 8.09 -2.39 -0.02 1.27 16 27 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 28 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 29 H 0.15 3.10 6.30 -2.91 -0.02 3.08 16 30 H 0.06 1.28 7.66 -2.38 -0.02 1.27 16 31 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.07 1.33 7.66 -2.39 -0.02 1.31 16 33 H 0.07 2.82 8.05 -2.38 -0.02 2.80 16 34 H 0.06 2.62 7.69 -2.39 -0.02 2.60 16 35 H 0.37 14.93 9.04 -74.06 -0.67 14.26 16 36 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 37 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -72.02 308.29 3.42 -68.59 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.33 Total: 18.83 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 3.49 Total: -38.36 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 0.30 Total: -59.00 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -2.49 Total: -41.83 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 1.80 Total: 51.76 kcal Total: -72.02 3.42 -68.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.719 kcal (2) G-P(sol) polarization free energy of solvation -72.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds