Wall clock time and date at job start Mon Mar 30 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.46950 * 2 1 4 4 C 1.38166 * 120.02810 * 265.31751 * 3 2 1 5 5 C 1.38249 * 120.05287 * 180.30167 * 4 3 2 6 6 C 1.38283 * 120.11340 * 359.68023 * 5 4 3 7 7 C 1.38127 * 120.05529 * 359.97438 * 6 5 4 8 8 C 1.38710 * 120.02763 * 85.00472 * 3 2 1 9 9 O 1.35903 * 120.05685 * 359.97438 * 8 3 2 10 10 C 1.42897 * 117.00055 * 179.73275 * 9 8 3 11 11 C 1.52999 * 109.47235 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47364 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.46986 * 55.00119 * 12 11 10 14 14 O 1.42898 * 109.47113 * 295.00079 * 12 11 10 15 15 C 1.50706 * 109.46931 * 174.99561 * 12 11 10 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 22 22 H 1.48498 * 109.47295 * 60.00420 * 19 17 15 23 23 H 1.09001 * 109.46714 * 60.00136 * 1 2 3 24 24 H 1.09000 * 109.47395 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47167 * 300.00180 * 1 2 3 26 26 H 1.08997 * 109.46736 * 240.00055 * 2 1 3 27 27 H 1.08999 * 109.46610 * 120.00397 * 2 1 3 28 28 H 1.08001 * 119.97338 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.94027 * 179.69705 * 5 4 3 30 30 H 1.07996 * 119.97539 * 180.02562 * 6 5 4 31 31 H 1.08001 * 120.02816 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.47478 * 59.99796 * 10 9 8 33 33 H 1.09001 * 109.47099 * 299.99545 * 10 9 8 34 34 H 1.08999 * 109.47143 * 59.99482 * 11 10 9 35 35 H 1.09005 * 109.47098 * 299.99700 * 11 10 9 36 36 H 0.96701 * 113.99881 * 299.99463 * 14 12 11 37 37 H 0.97000 * 119.99706 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3549 2.0401 -1.1922 5 6 2.8216 3.3414 -1.1923 6 6 2.9607 4.0287 -0.0004 7 6 2.6328 3.4164 1.1935 8 6 2.1651 2.1101 1.1964 9 8 1.8420 1.5054 2.3698 10 6 2.0093 2.2736 3.5631 11 6 1.5987 1.4321 4.7731 12 6 1.7784 2.2544 6.0508 13 1 1.2237 3.1886 5.9627 14 8 3.1654 2.5401 6.2422 15 6 1.2594 1.4713 7.2292 16 1 0.8434 0.4856 7.0817 17 6 1.3157 2.0134 8.4957 18 7 1.8218 3.2139 8.6754 19 14 0.6731 1.0425 9.9565 20 1 0.8463 1.8412 11.1965 21 1 -0.7681 0.7446 9.7575 22 1 1.4296 -0.2296 10.0769 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2465 1.5057 -2.1245 29 1 3.0778 3.8221 -2.1249 30 1 3.3251 5.0453 -0.0031 31 1 2.7412 3.9537 2.1241 32 1 1.3849 3.1655 3.5116 33 1 3.0544 2.5669 3.6628 34 1 2.2234 0.5404 4.8244 35 1 0.5537 1.1384 4.6736 36 1 3.7207 1.7533 6.3289 37 1 2.1558 3.7178 7.9168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232600.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:53 Heat of formation + Delta-G solvation = -94.469188 kcal Electronic energy + Delta-G solvation = -17936.964227 eV Core-core repulsion = 15064.439064 eV Total energy + Delta-G solvation = -2872.525163 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15143 -37.57048 -36.24448 -34.13315 -32.18215 -31.37742 -30.01734 -28.94242 -26.31846 -23.94987 -23.48378 -21.77332 -21.16672 -20.34499 -17.92329 -17.27391 -15.95696 -15.88089 -15.67949 -14.94052 -14.39800 -14.12388 -13.81967 -13.74674 -13.67436 -13.19670 -12.97049 -12.50403 -12.18551 -12.08081 -11.84022 -11.49800 -11.34927 -11.01707 -10.84224 -10.80638 -10.48179 -10.21191 -10.18165 -10.11548 -9.36635 -8.83658 -8.51719 -8.15545 -8.01565 -6.40431 -4.24405 1.33018 1.49522 3.39883 3.41413 3.47001 3.60895 3.77916 4.48422 4.73803 4.81837 5.03372 5.16603 5.25138 5.28866 5.41401 5.42233 5.45067 5.53037 5.60469 5.68185 5.83510 5.89161 5.95010 5.98591 6.10659 6.27430 6.30272 6.36930 6.43862 6.50150 6.55362 6.79157 6.88259 7.37829 7.63246 7.93557 8.30111 8.80501 9.01134 9.61221 10.99536 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.035119 B = 0.004358 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.097130 B = 6422.723165 C = 7052.884216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.074 4.074 3 C -0.122 4.122 4 C -0.084 4.084 5 C -0.165 4.165 6 C -0.085 4.085 7 C -0.208 4.208 8 C 0.141 3.859 9 O -0.313 6.313 10 C 0.061 3.939 11 C -0.131 4.131 12 C 0.215 3.785 13 H 0.051 0.949 14 O -0.585 6.585 15 C -0.650 4.650 16 H 0.051 0.949 17 C 0.034 3.966 18 N -0.891 5.891 19 Si 1.067 2.933 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.287 1.287 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.356 0.644 37 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 -2.632 -18.090 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.122 4.122 4 C -0.102 4.102 5 C -0.184 4.184 6 C -0.103 4.103 7 C -0.227 4.227 8 C 0.094 3.906 9 O -0.227 6.227 10 C -0.013 4.013 11 C -0.169 4.169 12 C 0.158 3.842 13 H 0.069 0.931 14 O -0.390 6.390 15 C -0.687 4.687 16 H 0.070 0.930 17 C -0.174 4.174 18 N -0.526 5.526 19 Si 0.895 3.105 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.214 1.214 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.148 0.852 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.201 0.799 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.143 -2.131 -16.445 16.583 hybrid contribution 0.422 -0.335 -1.607 1.695 sum 0.565 -2.466 -18.052 18.229 Atomic orbital electron populations 1.21710 0.94937 1.01454 1.02038 1.20333 0.96114 0.92148 1.02554 1.19282 1.05073 0.97281 0.90589 1.20823 0.98009 0.94824 0.96564 1.20963 1.04162 0.95314 0.97914 1.20921 0.97978 0.99469 0.91966 1.21377 1.06383 0.95202 0.99732 1.18943 0.94171 0.91157 0.86301 1.86097 1.81108 1.42499 1.12954 1.23070 1.01207 0.94891 0.82137 1.22292 1.01966 0.99372 0.93244 1.19498 0.80076 0.94734 0.89858 0.93141 1.86459 1.20660 1.36309 1.95553 1.22413 1.47382 1.04949 0.93996 0.93036 1.25826 0.94356 0.96787 1.00476 1.70652 1.34993 1.10719 1.36219 0.83587 0.76142 0.75086 0.75648 1.20698 1.21379 1.21352 0.93074 0.92627 0.92223 0.91571 0.90606 0.85830 0.86275 0.86078 0.85241 0.92668 0.91741 0.91873 0.91309 0.79879 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.90 37.16 0.37 -1.27 16 2 C -0.07 -0.89 5.79 -27.88 -0.16 -1.05 16 3 C -0.12 -1.65 5.15 -104.48 -0.54 -2.19 16 4 C -0.08 -0.98 9.68 -39.60 -0.38 -1.36 16 5 C -0.17 -1.86 10.04 -39.56 -0.40 -2.26 16 6 C -0.09 -1.05 10.04 -39.61 -0.40 -1.45 16 7 C -0.21 -3.02 9.04 -39.43 -0.36 -3.38 16 8 C 0.14 2.19 6.66 -39.22 -0.26 1.93 16 9 O -0.31 -5.41 9.27 -19.43 -0.18 -5.59 16 10 C 0.06 1.10 4.64 37.16 0.17 1.28 16 11 C -0.13 -2.68 5.20 -26.73 -0.14 -2.82 16 12 C 0.22 5.30 2.43 -27.88 -0.07 5.24 16 13 H 0.05 1.33 8.01 -51.93 -0.42 0.92 16 14 O -0.59 -14.27 11.55 -35.23 -0.41 -14.68 16 15 C -0.65 -17.90 8.76 -34.44 -0.30 -18.20 16 16 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 17 C 0.03 0.97 5.40 -17.82 -0.10 0.88 16 18 N -0.89 -26.96 13.53 55.43 0.75 -26.21 16 19 Si 1.07 24.75 29.90 -169.99 -5.08 19.66 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.65 8.05 -51.93 -0.42 0.24 16 27 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 28 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.13 1.87 6.30 -52.49 -0.33 1.54 16 32 H 0.06 0.97 7.66 -51.93 -0.40 0.57 16 33 H 0.06 1.16 7.34 -51.93 -0.38 0.77 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.36 7.79 9.04 45.56 0.41 8.20 16 37 H 0.28 8.68 6.47 -40.82 -0.26 8.42 16 LS Contribution 311.49 15.07 4.69 4.69 Total: -1.00 -30.52 311.49 -7.57 -38.08 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.78 Total: 8.69 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -2.56 Total: -24.65 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.75 Total: -26.21 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.59 Total: -20.27 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.52 -7.57 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232600.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.387 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds