Wall clock time and date at job start Mon Mar 30 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50696 * 109.46950 * 2 1 4 4 C 1.38166 * 120.02810 * 265.31751 * 3 2 1 5 5 C 1.38249 * 120.05287 * 180.30167 * 4 3 2 6 6 C 1.38283 * 120.11340 * 359.68023 * 5 4 3 7 7 C 1.38127 * 120.05529 * 359.97438 * 6 5 4 8 8 C 1.38710 * 120.02763 * 85.00472 * 3 2 1 9 9 O 1.35903 * 120.05685 * 359.97438 * 8 3 2 10 10 C 1.42897 * 117.00055 * 179.73275 * 9 8 3 11 11 C 1.52999 * 109.47235 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47364 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.46986 * 55.00119 * 12 11 10 14 14 O 1.42898 * 109.47113 * 295.00079 * 12 11 10 15 15 C 1.50706 * 109.46931 * 174.99561 * 12 11 10 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 12 11 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 22 22 H 1.48498 * 109.47295 * 60.00420 * 19 17 15 23 23 H 1.09001 * 109.46714 * 60.00136 * 1 2 3 24 24 H 1.09000 * 109.47395 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47167 * 300.00180 * 1 2 3 26 26 H 1.08997 * 109.46736 * 240.00055 * 2 1 3 27 27 H 1.08999 * 109.46610 * 120.00397 * 2 1 3 28 28 H 1.08001 * 119.97338 * 0.02562 * 4 3 2 29 29 H 1.08002 * 119.94027 * 179.69705 * 5 4 3 30 30 H 1.07996 * 119.97539 * 180.02562 * 6 5 4 31 31 H 1.08001 * 120.02816 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.47478 * 59.99796 * 10 9 8 33 33 H 1.09001 * 109.47099 * 299.99545 * 10 9 8 34 34 H 1.08999 * 109.47143 * 59.99482 * 11 10 9 35 35 H 1.09005 * 109.47098 * 299.99700 * 11 10 9 36 36 H 0.96701 * 113.99881 * 299.99463 * 14 12 11 37 37 H 0.97000 * 119.99706 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3549 2.0401 -1.1922 5 6 2.8216 3.3414 -1.1923 6 6 2.9607 4.0287 -0.0004 7 6 2.6328 3.4164 1.1935 8 6 2.1651 2.1101 1.1964 9 8 1.8420 1.5054 2.3698 10 6 2.0093 2.2736 3.5631 11 6 1.5987 1.4321 4.7731 12 6 1.7784 2.2544 6.0508 13 1 1.2237 3.1886 5.9627 14 8 3.1654 2.5401 6.2422 15 6 1.2594 1.4713 7.2292 16 1 0.8434 0.4856 7.0817 17 6 1.3157 2.0134 8.4957 18 7 1.8218 3.2139 8.6754 19 14 0.6731 1.0425 9.9565 20 1 0.8463 1.8412 11.1965 21 1 -0.7681 0.7446 9.7575 22 1 1.4296 -0.2296 10.0769 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2465 1.5057 -2.1245 29 1 3.0778 3.8221 -2.1249 30 1 3.3251 5.0453 -0.0031 31 1 2.7412 3.9537 2.1241 32 1 1.3849 3.1655 3.5116 33 1 3.0544 2.5669 3.6628 34 1 2.2234 0.5404 4.8244 35 1 0.5537 1.1384 4.6736 36 1 3.7207 1.7533 6.3289 37 1 2.1558 3.7178 7.9168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232600.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:53 Heat of formation + Delta-G solvation = -113.221126 kcal Electronic energy + Delta-G solvation = -17937.777372 eV Core-core repulsion = 15064.439064 eV Total energy + Delta-G solvation = -2873.338308 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27444 -38.93247 -37.99668 -35.08490 -34.33444 -33.02392 -31.03305 -30.02315 -28.16312 -25.33194 -24.79578 -23.22847 -22.44757 -21.66221 -19.51973 -18.92081 -17.33259 -17.16770 -16.82229 -16.63563 -15.78400 -15.68602 -15.41198 -14.95603 -14.73698 -14.52633 -14.39900 -14.13518 -13.78941 -13.29888 -12.90251 -12.65985 -12.57105 -12.54219 -12.39347 -12.22668 -11.93647 -11.79965 -11.66310 -11.56383 -11.31148 -10.66113 -10.20603 -9.81405 -9.10111 -8.65291 -6.50660 0.34999 0.47744 1.53431 1.60643 1.80497 2.17336 2.56204 2.79018 3.13320 3.75505 3.80488 3.87357 3.90283 4.03128 4.15819 4.28131 4.29174 4.32574 4.50137 4.53452 4.56030 4.62609 4.66956 4.81833 4.98534 5.07139 5.08123 5.17294 5.36439 5.40103 5.44011 5.53747 5.58810 5.79866 5.89493 6.09260 6.42650 6.52975 7.09231 7.45269 8.72960 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.035119 B = 0.004358 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.097130 B = 6422.723165 C = 7052.884216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 C -0.131 4.131 4 C -0.082 4.082 5 C -0.157 4.157 6 C -0.092 4.092 7 C -0.226 4.226 8 C 0.104 3.896 9 O -0.325 6.325 10 C 0.078 3.922 11 C -0.116 4.116 12 C 0.215 3.785 13 H 0.026 0.974 14 O -0.592 6.592 15 C -0.661 4.661 16 H 0.053 0.947 17 C -0.016 4.016 18 N -0.920 5.920 19 Si 1.116 2.884 20 H -0.285 1.285 21 H -0.270 1.270 22 H -0.268 1.268 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.157 0.843 29 H 0.153 0.847 30 H 0.143 0.857 31 H 0.119 0.881 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.367 0.633 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.636 -3.565 -20.163 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C -0.132 4.132 4 C -0.100 4.100 5 C -0.175 4.175 6 C -0.110 4.110 7 C -0.245 4.245 8 C 0.059 3.941 9 O -0.239 6.239 10 C 0.003 3.997 11 C -0.154 4.154 12 C 0.158 3.842 13 H 0.044 0.956 14 O -0.398 6.398 15 C -0.699 4.699 16 H 0.071 0.929 17 C -0.218 4.218 18 N -0.555 5.555 19 Si 0.937 3.063 20 H -0.210 1.210 21 H -0.195 1.195 22 H -0.193 1.193 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.051 0.949 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.175 0.825 29 H 0.171 0.829 30 H 0.161 0.839 31 H 0.137 0.863 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.213 0.787 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.129 -3.074 -18.552 18.806 hybrid contribution 0.463 -0.018 -1.127 1.218 sum 0.592 -3.092 -19.679 19.929 Atomic orbital electron populations 1.21680 0.94594 1.02187 1.01321 1.20373 0.96381 0.91455 1.02916 1.19618 1.05010 0.98024 0.90546 1.21244 0.96655 0.95140 0.96936 1.21413 1.02195 0.95118 0.98728 1.21249 0.97545 1.00588 0.91587 1.21471 1.07386 0.95151 1.00506 1.19298 0.96467 0.92160 0.86153 1.86028 1.82019 1.42613 1.13258 1.22674 1.00776 0.94133 0.82140 1.21979 1.01865 0.98994 0.92599 1.19345 0.79827 0.93828 0.91194 0.95645 1.86408 1.20574 1.37113 1.95722 1.22821 1.46838 1.05117 0.95103 0.92905 1.27331 0.93807 0.96819 1.03860 1.70791 1.37254 1.11975 1.35515 0.82964 0.76737 0.74364 0.72210 1.21030 1.19550 1.19338 0.91783 0.91196 0.94867 0.88855 0.92536 0.82545 0.82895 0.83921 0.86294 0.92949 0.92030 0.91482 0.91640 0.78663 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.90 71.98 0.71 -2.31 16 2 C -0.07 -1.67 5.79 29.85 0.17 -1.50 16 3 C -0.13 -3.38 5.15 -19.77 -0.10 -3.48 16 4 C -0.08 -1.63 9.68 22.26 0.22 -1.42 16 5 C -0.16 -2.99 10.04 22.28 0.22 -2.76 16 6 C -0.09 -2.09 10.04 22.25 0.22 -1.87 16 7 C -0.23 -6.58 9.04 22.37 0.20 -6.38 16 8 C 0.10 3.27 6.66 22.51 0.15 3.42 16 9 O -0.32 -11.53 9.27 -92.46 -0.86 -12.39 16 10 C 0.08 2.89 4.64 71.98 0.33 3.22 16 11 C -0.12 -4.87 5.20 30.59 0.16 -4.71 16 12 C 0.22 10.90 2.43 29.85 0.07 10.97 16 13 H 0.03 1.42 8.01 -2.39 -0.02 1.40 16 14 O -0.59 -29.60 11.55 -148.98 -1.72 -31.32 16 15 C -0.66 -36.79 8.76 25.60 0.22 -36.57 16 16 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 17 C -0.02 -0.92 5.40 84.66 0.46 -0.46 16 18 N -0.92 -56.70 13.53 21.45 0.29 -56.41 16 19 Si 1.12 49.45 29.90 68.60 2.05 51.50 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16 27 H 0.06 1.48 7.69 -2.39 -0.02 1.46 16 28 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.12 3.58 6.30 -2.91 -0.02 3.56 16 32 H 0.05 1.94 7.66 -2.39 -0.02 1.92 16 33 H 0.06 2.29 7.34 -2.39 -0.02 2.27 16 34 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.06 2.75 8.14 -2.38 -0.02 2.73 16 36 H 0.37 16.30 9.04 -74.06 -0.67 15.63 16 37 H 0.27 16.96 6.47 -92.71 -0.60 16.36 16 Total: -1.00 -66.43 311.49 3.36 -63.07 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.55 Total: 29.40 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 3.04 Total: -43.85 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.29 Total: -56.41 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -2.58 Total: -43.71 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 2.05 Total: 51.50 kcal Total: -66.43 3.36 -63.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232600.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.148 kcal (2) G-P(sol) polarization free energy of solvation -66.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds