Wall clock time and date at job start Mon Mar 30 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46835 * 2 1 4 4 C 1.38170 * 120.02489 * 264.97593 * 3 2 1 5 5 C 1.38242 * 120.05484 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.11122 * 0.02562 * 5 4 3 7 7 C 1.38122 * 120.05199 * 359.68662 * 6 5 4 8 8 C 1.38705 * 120.02768 * 85.00685 * 3 2 1 9 9 O 1.35900 * 120.05900 * 359.97271 * 8 3 2 10 10 C 1.42896 * 117.00321 * 180.02562 * 9 8 3 11 11 C 1.52996 * 109.47337 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47406 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.46892 * 304.99936 * 12 11 10 14 14 O 1.42895 * 109.47095 * 64.99906 * 12 11 10 15 15 C 1.50697 * 109.46995 * 185.00246 * 12 11 10 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 12 11 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00035 * 179.72339 * 17 15 12 19 19 Si 1.86803 * 119.99853 * 359.72191 * 17 15 12 20 20 H 1.48500 * 109.46986 * 90.00256 * 19 17 15 21 21 H 1.48496 * 109.47029 * 210.00273 * 19 17 15 22 22 H 1.48499 * 109.47352 * 330.00102 * 19 17 15 23 23 H 1.09001 * 109.47428 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47285 * 299.99545 * 1 2 3 25 25 H 1.08996 * 109.47344 * 60.00392 * 1 2 3 26 26 H 1.09004 * 109.46472 * 240.00118 * 2 1 3 27 27 H 1.08997 * 109.47148 * 120.00368 * 2 1 3 28 28 H 1.07997 * 119.97440 * 0.05222 * 4 3 2 29 29 H 1.07998 * 119.94504 * 180.02562 * 5 4 3 30 30 H 1.08000 * 119.97358 * 179.97438 * 6 5 4 31 31 H 1.08006 * 120.02673 * 180.31915 * 7 6 5 32 32 H 1.09007 * 109.47033 * 60.00013 * 10 9 8 33 33 H 1.09000 * 109.47187 * 300.00421 * 10 9 8 34 34 H 1.09000 * 109.47212 * 59.99750 * 11 10 9 35 35 H 1.09000 * 109.47355 * 300.00354 * 11 10 9 36 36 H 0.96701 * 113.99795 * 60.00295 * 14 12 11 37 37 H 0.97000 * 119.99706 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3615 2.0377 -1.1917 5 6 2.8228 3.3409 -1.1924 6 6 2.9565 4.0302 -0.0009 7 6 2.6231 3.4199 1.1924 8 6 2.1651 2.1101 1.1963 9 8 1.8420 1.5055 2.3698 10 6 2.0032 2.2758 3.5625 11 6 1.5924 1.4344 4.7725 12 6 1.7644 2.2594 6.0495 13 1 2.7872 2.6320 6.1063 14 8 0.8560 3.3623 6.0300 15 6 1.4778 1.3937 7.2492 16 1 1.1963 0.3599 7.1143 17 6 1.5699 1.9230 8.5191 18 7 1.3145 1.1690 9.5659 19 14 2.0574 3.7111 8.7525 20 1 0.8390 4.5600 8.7558 21 1 2.7713 3.8648 10.0455 22 1 2.9496 4.1300 7.6418 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.2579 1.5016 -2.1235 29 1 3.0792 3.8215 -2.1249 30 1 3.3175 5.0481 -0.0040 31 1 2.7228 3.9603 2.1222 32 1 1.3749 3.1649 3.5084 33 1 3.0467 2.5739 3.6642 34 1 2.2202 0.5451 4.8267 35 1 0.5488 1.1366 4.6705 36 1 -0.0746 3.1045 5.9800 37 1 1.3797 1.5413 10.4592 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232602.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:56 Heat of formation + Delta-G solvation = -85.195765 kcal Electronic energy + Delta-G solvation = -17965.775566 eV Core-core repulsion = 15093.652529 eV Total energy + Delta-G solvation = -2872.123037 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.16857 -37.60337 -36.32317 -34.13644 -32.32842 -31.45370 -30.04022 -29.00068 -27.04917 -24.01491 -23.62824 -21.64757 -21.09543 -20.24728 -17.85920 -17.29421 -15.96362 -15.90151 -15.68837 -14.94504 -14.58658 -14.23105 -14.03622 -13.79307 -13.70452 -13.19248 -12.91019 -12.82580 -12.26079 -11.89287 -11.70473 -11.54791 -11.47863 -11.33539 -10.91340 -10.83997 -10.63440 -10.45096 -10.20168 -9.84722 -9.27474 -8.85065 -8.71315 -8.61389 -8.03145 -6.18529 -4.31148 1.31653 1.48063 3.40107 3.43668 3.44514 3.55297 3.76528 4.44315 4.72835 4.80714 5.01527 5.10395 5.16336 5.23957 5.39139 5.41873 5.43720 5.48876 5.59227 5.65831 5.76755 5.86106 5.89406 5.98272 6.10041 6.22506 6.28722 6.32376 6.40987 6.48445 6.54259 6.76660 6.86857 7.24517 7.47684 7.63783 8.22139 8.74664 8.91561 9.44014 10.91829 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.033666 B = 0.004685 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.500492 B = 5974.461209 C = 6600.035430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C -0.121 4.121 4 C -0.084 4.084 5 C -0.165 4.165 6 C -0.086 4.086 7 C -0.209 4.209 8 C 0.141 3.859 9 O -0.312 6.312 10 C 0.060 3.940 11 C -0.129 4.129 12 C 0.194 3.806 13 H 0.062 0.938 14 O -0.590 6.590 15 C -0.563 4.563 16 H 0.076 0.924 17 C 0.082 3.918 18 N -0.891 5.891 19 Si 0.915 3.085 20 H -0.278 1.278 21 H -0.304 1.304 22 H -0.269 1.269 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.364 0.636 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 2.529 -20.246 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.121 4.121 4 C -0.102 4.102 5 C -0.183 4.183 6 C -0.104 4.104 7 C -0.227 4.227 8 C 0.094 3.906 9 O -0.225 6.225 10 C -0.015 4.015 11 C -0.167 4.167 12 C 0.137 3.863 13 H 0.080 0.920 14 O -0.397 6.397 15 C -0.600 4.600 16 H 0.094 0.906 17 C -0.123 4.123 18 N -0.528 5.528 19 Si 0.744 3.256 20 H -0.204 1.204 21 H -0.232 1.232 22 H -0.194 1.194 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.148 0.852 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.211 0.789 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.771 2.648 -19.972 20.224 hybrid contribution -0.129 0.805 0.329 0.880 sum 1.641 3.453 -19.643 20.012 Atomic orbital electron populations 1.21705 0.94911 1.01487 1.02020 1.20341 0.96137 0.92114 1.02612 1.19286 1.04919 0.97343 0.90577 1.20828 0.97966 0.94821 0.96602 1.20964 1.04194 0.95271 0.97912 1.20917 0.98007 0.99468 0.91995 1.21367 1.06540 0.95104 0.99722 1.18932 0.94204 0.91129 0.86287 1.86098 1.81225 1.42276 1.12937 1.23078 1.00710 0.95378 0.82329 1.22202 1.02339 0.99522 0.92638 1.19874 0.90610 0.84651 0.91129 0.92014 1.86365 1.19455 1.37426 1.96417 1.21507 1.49753 0.98970 0.89778 0.90631 1.25040 0.93030 0.98564 0.95662 1.69954 1.47519 1.36719 0.98581 0.86233 0.79070 0.84400 0.75850 1.20362 1.23230 1.19414 0.92605 0.92204 0.93102 0.91582 0.90523 0.85827 0.86298 0.86119 0.85248 0.91668 0.92590 0.90818 0.91428 0.78947 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.89 37.16 0.37 -1.22 16 2 C -0.07 -0.87 5.79 -27.88 -0.16 -1.03 16 3 C -0.12 -1.58 5.15 -104.48 -0.54 -2.12 16 4 C -0.08 -0.94 9.68 -39.60 -0.38 -1.33 16 5 C -0.17 -1.79 10.04 -39.56 -0.40 -2.19 16 6 C -0.09 -1.01 10.04 -39.60 -0.40 -1.41 16 7 C -0.21 -2.88 9.04 -39.43 -0.36 -3.24 16 8 C 0.14 2.10 6.66 -39.22 -0.26 1.84 16 9 O -0.31 -5.14 9.27 -19.43 -0.18 -5.32 16 10 C 0.06 1.00 4.64 37.16 0.17 1.17 16 11 C -0.13 -2.48 5.20 -26.73 -0.14 -2.62 16 12 C 0.19 4.43 2.30 -27.88 -0.06 4.36 16 13 H 0.06 1.45 7.19 -51.93 -0.37 1.08 16 14 O -0.59 -12.90 10.59 -35.23 -0.37 -13.28 16 15 C -0.56 -15.41 9.34 -34.44 -0.32 -15.73 16 16 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 17 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 18 N -0.89 -26.86 13.96 55.43 0.77 -26.09 16 19 Si 0.91 22.89 26.19 -169.99 -4.45 18.44 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 22 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 27 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.13 1.75 6.30 -52.48 -0.33 1.41 16 32 H 0.07 1.07 7.33 -51.92 -0.38 0.69 16 33 H 0.06 0.91 7.67 -51.93 -0.40 0.51 16 34 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.36 6.98 9.04 45.56 0.41 7.39 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -30.55 308.45 -7.02 -37.57 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.86 Total: 5.30 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -2.58 Total: -21.27 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.77 Total: -26.09 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.55 Total: -18.60 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.45 Total: 18.44 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.55 -7.02 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232602.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.625 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds