Wall clock time and date at job start Mon Mar 30 2020 05:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.46835 * 2 1 4 4 C 1.38170 * 120.02489 * 264.97593 * 3 2 1 5 5 C 1.38242 * 120.05484 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.11122 * 0.02562 * 5 4 3 7 7 C 1.38122 * 120.05199 * 359.68662 * 6 5 4 8 8 C 1.38705 * 120.02768 * 85.00685 * 3 2 1 9 9 O 1.35900 * 120.05900 * 359.97271 * 8 3 2 10 10 C 1.42896 * 117.00321 * 180.02562 * 9 8 3 11 11 C 1.52996 * 109.47337 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47406 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.46892 * 304.99936 * 12 11 10 14 14 O 1.42895 * 109.47095 * 64.99906 * 12 11 10 15 15 C 1.50697 * 109.46995 * 185.00246 * 12 11 10 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 12 11 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00035 * 179.72339 * 17 15 12 19 19 Si 1.86803 * 119.99853 * 359.72191 * 17 15 12 20 20 H 1.48500 * 109.46986 * 90.00256 * 19 17 15 21 21 H 1.48496 * 109.47029 * 210.00273 * 19 17 15 22 22 H 1.48499 * 109.47352 * 330.00102 * 19 17 15 23 23 H 1.09001 * 109.47428 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47285 * 299.99545 * 1 2 3 25 25 H 1.08996 * 109.47344 * 60.00392 * 1 2 3 26 26 H 1.09004 * 109.46472 * 240.00118 * 2 1 3 27 27 H 1.08997 * 109.47148 * 120.00368 * 2 1 3 28 28 H 1.07997 * 119.97440 * 0.05222 * 4 3 2 29 29 H 1.07998 * 119.94504 * 180.02562 * 5 4 3 30 30 H 1.08000 * 119.97358 * 179.97438 * 6 5 4 31 31 H 1.08006 * 120.02673 * 180.31915 * 7 6 5 32 32 H 1.09007 * 109.47033 * 60.00013 * 10 9 8 33 33 H 1.09000 * 109.47187 * 300.00421 * 10 9 8 34 34 H 1.09000 * 109.47212 * 59.99750 * 11 10 9 35 35 H 1.09000 * 109.47355 * 300.00354 * 11 10 9 36 36 H 0.96701 * 113.99795 * 60.00295 * 14 12 11 37 37 H 0.97000 * 119.99706 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3615 2.0377 -1.1917 5 6 2.8228 3.3409 -1.1924 6 6 2.9565 4.0302 -0.0009 7 6 2.6231 3.4199 1.1924 8 6 2.1651 2.1101 1.1963 9 8 1.8420 1.5055 2.3698 10 6 2.0032 2.2758 3.5625 11 6 1.5924 1.4344 4.7725 12 6 1.7644 2.2594 6.0495 13 1 2.7872 2.6320 6.1063 14 8 0.8560 3.3623 6.0300 15 6 1.4778 1.3937 7.2492 16 1 1.1963 0.3599 7.1143 17 6 1.5699 1.9230 8.5191 18 7 1.3145 1.1690 9.5659 19 14 2.0574 3.7111 8.7525 20 1 0.8390 4.5600 8.7558 21 1 2.7713 3.8648 10.0455 22 1 2.9496 4.1300 7.6418 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.2579 1.5016 -2.1235 29 1 3.0792 3.8215 -2.1249 30 1 3.3175 5.0481 -0.0040 31 1 2.7228 3.9603 2.1222 32 1 1.3749 3.1649 3.5084 33 1 3.0467 2.5739 3.6642 34 1 2.2202 0.5451 4.8267 35 1 0.5488 1.1366 4.6705 36 1 -0.0746 3.1045 5.9800 37 1 1.3797 1.5413 10.4592 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232602.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:55 Heat of formation + Delta-G solvation = -104.744099 kcal Electronic energy + Delta-G solvation = -17966.623245 eV Core-core repulsion = 15093.652529 eV Total energy + Delta-G solvation = -2872.970716 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.21593 -38.87644 -37.92448 -35.04285 -34.48585 -32.98979 -30.99771 -30.06994 -28.82985 -25.35021 -24.74498 -22.90767 -22.34290 -21.59925 -19.34814 -18.93169 -17.29886 -17.05284 -16.81845 -16.65185 -16.13831 -15.78123 -15.29727 -14.88904 -14.84352 -14.66747 -14.25273 -14.02397 -13.62110 -13.37204 -13.03571 -12.90385 -12.80233 -12.55365 -12.38315 -12.27210 -11.82384 -11.75433 -11.56133 -11.49927 -11.22521 -10.90224 -10.50820 -9.76731 -9.04567 -8.38945 -6.55078 0.39774 0.52715 1.40326 1.43200 1.56933 2.25259 2.35821 2.83758 2.95202 3.80517 3.84610 3.92864 3.99231 4.09256 4.21884 4.31511 4.35991 4.37108 4.53761 4.57248 4.59879 4.69556 4.72409 4.85820 5.02036 5.11140 5.17696 5.21457 5.39560 5.43259 5.44404 5.48537 5.58135 5.63429 5.93734 6.05486 6.49557 6.58881 7.09354 7.26593 8.75380 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.033666 B = 0.004685 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.500492 B = 5974.461209 C = 6600.035430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.075 4.075 3 C -0.132 4.132 4 C -0.084 4.084 5 C -0.159 4.159 6 C -0.092 4.092 7 C -0.224 4.224 8 C 0.107 3.893 9 O -0.327 6.327 10 C 0.073 3.927 11 C -0.119 4.119 12 C 0.203 3.797 13 H 0.060 0.940 14 O -0.589 6.589 15 C -0.568 4.568 16 H 0.040 0.960 17 C 0.030 3.970 18 N -0.937 5.937 19 Si 0.976 3.024 20 H -0.273 1.273 21 H -0.302 1.302 22 H -0.260 1.260 23 H 0.067 0.933 24 H 0.035 0.965 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.154 0.846 29 H 0.151 0.849 30 H 0.144 0.856 31 H 0.126 0.874 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.377 0.623 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 4.128 -22.958 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 C -0.133 4.133 4 C -0.102 4.102 5 C -0.177 4.177 6 C -0.110 4.110 7 C -0.243 4.243 8 C 0.062 3.938 9 O -0.241 6.241 10 C -0.002 4.002 11 C -0.157 4.157 12 C 0.145 3.855 13 H 0.078 0.922 14 O -0.397 6.397 15 C -0.605 4.605 16 H 0.058 0.942 17 C -0.170 4.170 18 N -0.576 5.576 19 Si 0.803 3.197 20 H -0.198 1.198 21 H -0.230 1.230 22 H -0.184 1.184 23 H 0.086 0.914 24 H 0.054 0.946 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.171 0.829 29 H 0.169 0.831 30 H 0.161 0.839 31 H 0.143 0.857 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.225 0.775 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.260 4.246 -22.707 23.211 hybrid contribution -0.307 0.251 1.052 1.124 sum 1.954 4.497 -21.656 22.204 Atomic orbital electron populations 1.21672 0.94594 1.02093 1.01389 1.20368 0.96398 0.91634 1.02800 1.19592 1.05053 0.97961 0.90707 1.21216 0.96822 0.95215 0.96910 1.21396 1.02404 0.95051 0.98813 1.21255 0.97491 1.00603 0.91604 1.21493 1.07238 0.94896 1.00637 1.19263 0.96342 0.92154 0.86080 1.86034 1.82097 1.42617 1.13364 1.22754 1.00872 0.94610 0.81916 1.21938 1.02223 0.98978 0.92561 1.19629 0.90597 0.84401 0.90826 0.92208 1.86296 1.20379 1.36623 1.96353 1.21840 1.48776 0.98177 0.91708 0.94152 1.25859 0.93149 1.02590 0.95435 1.70070 1.49502 1.38755 0.99243 0.85261 0.78975 0.79436 0.76016 1.19835 1.22958 1.18406 0.91418 0.94620 0.91843 0.89135 0.92541 0.82886 0.83143 0.83857 0.85650 0.91300 0.92190 0.91693 0.91524 0.77471 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.89 71.98 0.71 -2.24 16 2 C -0.07 -1.65 5.79 29.85 0.17 -1.48 16 3 C -0.13 -3.28 5.15 -19.77 -0.10 -3.38 16 4 C -0.08 -1.61 9.68 22.25 0.22 -1.40 16 5 C -0.16 -2.86 10.04 22.28 0.22 -2.64 16 6 C -0.09 -1.92 10.04 22.26 0.22 -1.69 16 7 C -0.22 -5.93 9.04 22.37 0.20 -5.73 16 8 C 0.11 3.13 6.66 22.51 0.15 3.28 16 9 O -0.33 -10.86 9.27 -92.43 -0.86 -11.72 16 10 C 0.07 2.44 4.64 71.98 0.33 2.77 16 11 C -0.12 -4.61 5.20 30.59 0.16 -4.45 16 12 C 0.20 9.18 2.30 29.85 0.07 9.25 16 13 H 0.06 2.76 7.19 -2.39 -0.02 2.74 16 14 O -0.59 -24.91 10.59 -148.98 -1.58 -26.48 16 15 C -0.57 -31.66 9.34 25.60 0.24 -31.42 16 16 H 0.04 2.48 7.99 -2.92 -0.02 2.45 16 17 C 0.03 1.72 5.47 84.66 0.46 2.18 16 18 N -0.94 -57.68 13.96 21.45 0.30 -57.38 16 19 Si 0.98 46.88 26.19 68.60 1.80 48.68 16 20 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 22 H -0.26 -11.99 6.54 99.48 0.65 -11.34 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.03 0.90 8.14 -2.39 -0.02 0.89 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 1.52 8.05 -2.39 -0.02 1.50 16 27 H 0.06 1.46 7.69 -2.39 -0.02 1.44 16 28 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 29 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 30 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.13 3.30 6.30 -2.91 -0.02 3.28 16 32 H 0.07 2.22 7.33 -2.38 -0.02 2.20 16 33 H 0.06 1.93 7.67 -2.39 -0.02 1.91 16 34 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.38 13.99 9.04 -74.06 -0.67 13.32 16 37 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -66.03 308.45 3.05 -62.98 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.32 Total: 20.84 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 3.06 Total: -36.92 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.30 Total: -57.38 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -2.43 Total: -38.20 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.80 Total: 48.68 kcal Total: -66.03 3.05 -62.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232602.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.762 kcal (2) G-P(sol) polarization free energy of solvation -66.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds