Wall clock time and date at job start Mon Mar 30 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47179 * 2 1 4 4 C 1.38288 * 119.96770 * 270.02183 * 3 2 1 5 5 C 1.38241 * 120.10640 * 180.02562 * 4 3 2 6 6 C 1.38169 * 120.05773 * 359.97438 * 5 4 3 7 7 C 1.38703 * 119.94277 * 359.97438 * 6 5 4 8 8 O 1.35903 * 120.05406 * 180.29438 * 7 6 5 9 9 C 1.42905 * 117.00064 * 359.73121 * 8 7 6 10 10 C 1.53003 * 109.47126 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47162 * 180.02562 * 10 9 8 12 12 H 1.09004 * 109.47090 * 54.99643 * 11 10 9 13 13 O 1.42903 * 109.47013 * 295.00229 * 11 10 9 14 14 C 1.50694 * 109.47563 * 174.99980 * 11 10 9 15 15 H 1.08005 * 119.99696 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00399 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99959 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99965 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47232 * 60.00068 * 18 16 14 20 20 H 1.48500 * 109.46788 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47017 * 299.99952 * 18 16 14 22 22 C 1.38116 * 119.97093 * 89.99840 * 3 2 1 23 23 H 1.09000 * 109.47502 * 59.99855 * 1 2 3 24 24 H 1.08992 * 109.47167 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47155 * 300.00045 * 1 2 3 26 26 H 1.08996 * 109.47306 * 239.99684 * 2 1 3 27 27 H 1.09003 * 109.46911 * 119.99703 * 2 1 3 28 28 H 1.07992 * 119.94652 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.97392 * 180.02562 * 5 4 3 30 30 H 1.08008 * 120.02679 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.46692 * 299.99867 * 9 8 7 32 32 H 1.08996 * 109.46777 * 59.99891 * 9 8 7 33 33 H 1.09000 * 109.47280 * 300.00185 * 10 9 8 34 34 H 1.08999 * 109.46797 * 60.00009 * 10 9 8 35 35 H 0.96699 * 114.00269 * 299.99633 * 13 11 10 36 36 H 0.97000 * 119.99944 * 179.97438 * 17 16 14 37 37 H 1.08000 * 120.03192 * 0.02696 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2622 2.0723 -1.1980 5 6 2.7235 3.3754 -1.2013 6 6 2.9556 4.0305 -0.0071 7 6 2.7248 3.3796 1.1957 8 8 2.9466 4.0238 2.3717 9 6 3.4232 5.3688 2.2948 10 6 3.6118 5.9246 3.7078 11 6 4.1213 7.3648 3.6255 12 1 3.4410 7.9565 3.0129 13 8 5.4238 7.3764 3.0376 14 6 4.1903 7.9533 5.0110 15 1 3.9001 7.3593 5.8651 16 6 4.6248 9.2497 5.1887 17 7 4.9797 9.9725 4.1489 18 14 4.7110 9.9788 6.9064 19 1 5.6377 9.1724 7.7406 20 1 5.2066 11.3764 6.8265 21 1 3.3576 9.9672 7.5175 22 6 2.2623 2.0714 1.1965 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0810 1.5621 -2.1324 29 1 2.9019 3.8823 -2.1382 30 1 3.3156 5.0488 -0.0103 31 1 4.3764 5.3868 1.7666 32 1 2.6985 5.9808 1.7577 33 1 2.6583 5.9066 4.2356 34 1 4.3362 5.3126 4.2452 35 1 6.0825 6.8685 3.5309 36 1 5.2850 10.8847 4.2738 37 1 2.0827 1.5622 2.1318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:58 Heat of formation + Delta-G solvation = -89.165576 kcal Electronic energy + Delta-G solvation = -17503.426538 eV Core-core repulsion = 14631.131358 eV Total energy + Delta-G solvation = -2872.295181 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.99909 -37.77112 -35.98123 -33.87934 -32.17799 -31.43606 -29.88682 -29.02630 -26.63775 -24.29376 -23.09339 -22.41321 -20.72620 -20.17731 -17.55784 -16.99769 -15.91658 -15.80238 -15.74294 -14.72663 -14.61575 -14.23885 -14.02609 -13.82158 -13.51362 -13.16715 -13.00746 -12.54502 -12.22930 -11.97163 -11.62563 -11.31525 -11.24283 -11.13770 -11.02656 -10.89573 -10.76674 -10.44432 -10.13340 -10.02193 -9.11189 -8.77158 -8.61610 -8.25738 -8.02356 -6.05080 -4.23535 1.36537 1.54479 3.27617 3.32732 3.34259 3.52484 3.81462 4.36774 4.66267 4.81573 4.97904 5.18438 5.18703 5.22200 5.30560 5.39347 5.51405 5.55492 5.57902 5.65364 5.73158 5.86312 5.96758 6.01450 6.10478 6.19119 6.40593 6.46468 6.50168 6.57152 6.62260 6.89015 6.95066 7.63899 7.71069 7.80103 8.12474 8.78860 9.31179 9.53165 10.99412 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.050808 B = 0.003575 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.962250 B = 7831.147386 C = 8203.364366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.049 4.049 4 C -0.166 4.166 5 C -0.077 4.077 6 C -0.214 4.214 7 C 0.143 3.857 8 O -0.319 6.319 9 C 0.062 3.938 10 C -0.139 4.139 11 C 0.232 3.768 12 H 0.058 0.942 13 O -0.568 6.568 14 C -0.573 4.573 15 H 0.057 0.943 16 C 0.078 3.922 17 N -0.860 5.860 18 Si 0.892 3.108 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.159 4.159 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.347 0.653 36 H 0.262 0.738 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.838 -16.331 -9.107 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.049 4.049 4 C -0.185 4.185 5 C -0.095 4.095 6 C -0.233 4.233 7 C 0.097 3.903 8 O -0.232 6.232 9 C -0.012 4.012 10 C -0.177 4.177 11 C 0.175 3.825 12 H 0.076 0.924 13 O -0.371 6.371 14 C -0.611 4.611 15 H 0.076 0.924 16 C -0.128 4.128 17 N -0.496 5.496 18 Si 0.719 3.281 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.178 4.178 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.149 0.851 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.191 0.809 36 H 0.072 0.928 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.110 -15.820 -9.419 19.399 hybrid contribution 0.360 0.411 1.216 1.333 sum -5.750 -15.409 -8.203 18.380 Atomic orbital electron populations 1.21745 0.94675 1.01570 1.02416 1.20536 0.96222 0.92512 1.02817 1.19622 0.97099 0.95768 0.92379 1.20834 1.04883 0.95485 0.97271 1.20918 0.96807 0.94422 0.97391 1.21391 1.07937 1.01717 0.92267 1.19104 0.93846 0.92012 0.85362 1.86103 1.80343 1.29179 1.27614 1.23089 0.98501 0.78489 1.01135 1.22465 1.02362 1.00286 0.92602 1.19324 0.82083 0.87107 0.94007 0.92434 1.86545 1.20966 1.75896 1.53688 1.21588 1.47813 0.98594 0.93092 0.92437 1.25054 0.94086 0.96868 0.96770 1.70063 1.41221 1.08985 1.29332 0.86682 0.78562 0.78183 0.84642 1.20084 1.21167 1.20085 1.20274 1.06063 0.92983 0.98432 0.92536 0.92477 0.92383 0.90997 0.90954 0.86389 0.86004 0.85142 0.91600 0.92522 0.91424 0.92002 0.80891 0.92848 0.85550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.08 -0.74 6.06 -27.88 -0.17 -0.91 16 3 C -0.05 -0.57 5.13 -104.65 -0.54 -1.11 16 4 C -0.17 -1.91 9.70 -39.56 -0.38 -2.29 16 5 C -0.08 -0.96 10.04 -39.61 -0.40 -1.36 16 6 C -0.21 -3.15 9.04 -39.43 -0.36 -3.50 16 7 C 0.14 2.28 6.69 -39.22 -0.26 2.01 16 8 O -0.32 -5.69 10.14 -19.43 -0.20 -5.89 16 9 C 0.06 1.14 4.64 37.16 0.17 1.31 16 10 C -0.14 -2.86 5.20 -26.73 -0.14 -3.00 16 11 C 0.23 5.79 2.82 -27.89 -0.08 5.71 16 12 H 0.06 1.56 8.14 -51.93 -0.42 1.13 16 13 O -0.57 -14.26 12.27 -35.23 -0.43 -14.70 16 14 C -0.57 -15.64 8.76 -34.45 -0.30 -15.94 16 15 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 16 C 0.08 2.18 5.40 -17.82 -0.10 2.09 16 17 N -0.86 -25.27 12.84 55.43 0.71 -24.56 16 18 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 C -0.16 -2.20 9.64 -39.44 -0.38 -2.58 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 30 H 0.13 1.90 6.30 -52.48 -0.33 1.57 16 31 H 0.07 1.20 7.35 -51.93 -0.38 0.82 16 32 H 0.06 1.01 7.65 -51.93 -0.40 0.61 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.35 7.73 9.04 45.56 0.41 8.14 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 314.70 15.07 4.74 4.74 Total: -1.00 -30.26 314.70 -7.64 -37.90 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.88 Total: 6.84 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -2.56 Total: -20.39 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.71 Total: -24.56 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.63 Total: -20.58 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.26 -7.64 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.261 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds