Wall clock time and date at job start Mon Mar 30 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 109.47179 * 2 1 4 4 C 1.38288 * 119.96770 * 270.02183 * 3 2 1 5 5 C 1.38241 * 120.10640 * 180.02562 * 4 3 2 6 6 C 1.38169 * 120.05773 * 359.97438 * 5 4 3 7 7 C 1.38703 * 119.94277 * 359.97438 * 6 5 4 8 8 O 1.35903 * 120.05406 * 180.29438 * 7 6 5 9 9 C 1.42905 * 117.00064 * 359.73121 * 8 7 6 10 10 C 1.53003 * 109.47126 * 179.97438 * 9 8 7 11 11 C 1.52993 * 109.47162 * 180.02562 * 10 9 8 12 12 H 1.09004 * 109.47090 * 54.99643 * 11 10 9 13 13 O 1.42903 * 109.47013 * 295.00229 * 11 10 9 14 14 C 1.50694 * 109.47563 * 174.99980 * 11 10 9 15 15 H 1.08005 * 119.99696 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00399 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99959 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99965 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47232 * 60.00068 * 18 16 14 20 20 H 1.48500 * 109.46788 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47017 * 299.99952 * 18 16 14 22 22 C 1.38116 * 119.97093 * 89.99840 * 3 2 1 23 23 H 1.09000 * 109.47502 * 59.99855 * 1 2 3 24 24 H 1.08992 * 109.47167 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47155 * 300.00045 * 1 2 3 26 26 H 1.08996 * 109.47306 * 239.99684 * 2 1 3 27 27 H 1.09003 * 109.46911 * 119.99703 * 2 1 3 28 28 H 1.07992 * 119.94652 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.97392 * 180.02562 * 5 4 3 30 30 H 1.08008 * 120.02679 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.46692 * 299.99867 * 9 8 7 32 32 H 1.08996 * 109.46777 * 59.99891 * 9 8 7 33 33 H 1.09000 * 109.47280 * 300.00185 * 10 9 8 34 34 H 1.08999 * 109.46797 * 60.00009 * 10 9 8 35 35 H 0.96699 * 114.00269 * 299.99633 * 13 11 10 36 36 H 0.97000 * 119.99944 * 179.97438 * 17 16 14 37 37 H 1.08000 * 120.03192 * 0.02696 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2622 2.0723 -1.1980 5 6 2.7235 3.3754 -1.2013 6 6 2.9556 4.0305 -0.0071 7 6 2.7248 3.3796 1.1957 8 8 2.9466 4.0238 2.3717 9 6 3.4232 5.3688 2.2948 10 6 3.6118 5.9246 3.7078 11 6 4.1213 7.3648 3.6255 12 1 3.4410 7.9565 3.0129 13 8 5.4238 7.3764 3.0376 14 6 4.1903 7.9533 5.0110 15 1 3.9001 7.3593 5.8651 16 6 4.6248 9.2497 5.1887 17 7 4.9797 9.9725 4.1489 18 14 4.7110 9.9788 6.9064 19 1 5.6377 9.1724 7.7406 20 1 5.2066 11.3764 6.8265 21 1 3.3576 9.9672 7.5175 22 6 2.2623 2.0714 1.1965 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.0810 1.5621 -2.1324 29 1 2.9019 3.8823 -2.1382 30 1 3.3156 5.0488 -0.0103 31 1 4.3764 5.3868 1.7666 32 1 2.6985 5.9808 1.7577 33 1 2.6583 5.9066 4.2356 34 1 4.3362 5.3126 4.2452 35 1 6.0825 6.8685 3.5309 36 1 5.2850 10.8847 4.2738 37 1 2.0827 1.5622 2.1318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:58 Heat of formation + Delta-G solvation = -107.791707 kcal Electronic energy + Delta-G solvation = -17504.234228 eV Core-core repulsion = 14631.131358 eV Total energy + Delta-G solvation = -2873.102870 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.14527 -38.99508 -37.84137 -34.72864 -34.29697 -33.01774 -31.07203 -29.98499 -28.52395 -25.56158 -24.43278 -23.43764 -22.30015 -21.46419 -19.03554 -18.71298 -17.23811 -16.98126 -16.91253 -16.66755 -16.20875 -15.58673 -15.46614 -14.96861 -14.60409 -14.44523 -14.09292 -13.99623 -13.51415 -13.34706 -12.97800 -12.85274 -12.75582 -12.51504 -12.38308 -12.19404 -11.98376 -11.82473 -11.59429 -11.54543 -11.11204 -10.72844 -10.26216 -9.76753 -9.14376 -8.16699 -6.42691 0.35607 0.49617 1.40979 1.42595 1.50865 2.19608 2.41066 2.79461 3.09615 3.80791 3.86726 3.99607 4.06464 4.12273 4.23600 4.29625 4.40024 4.43119 4.49343 4.54719 4.64233 4.70089 4.78656 4.87562 5.08904 5.11208 5.16391 5.19799 5.39520 5.41807 5.51369 5.58898 5.67103 5.70726 5.88995 6.03610 6.46422 6.68402 7.29684 7.49014 8.87960 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.050808 B = 0.003575 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.962250 B = 7831.147386 C = 8203.364366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.046 4.046 4 C -0.160 4.160 5 C -0.080 4.080 6 C -0.232 4.232 7 C 0.110 3.890 8 O -0.333 6.333 9 C 0.077 3.923 10 C -0.125 4.125 11 C 0.232 3.768 12 H 0.028 0.972 13 O -0.580 6.580 14 C -0.590 4.590 15 H 0.061 0.939 16 C 0.025 3.975 17 N -0.900 5.900 18 Si 0.962 3.038 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.268 1.268 22 C -0.170 4.170 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.122 0.878 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.359 0.641 36 H 0.263 0.737 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.305 -18.091 -9.525 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.047 4.047 4 C -0.178 4.178 5 C -0.098 4.098 6 C -0.251 4.251 7 C 0.065 3.935 8 O -0.248 6.248 9 C 0.002 3.998 10 C -0.163 4.163 11 C 0.175 3.825 12 H 0.046 0.954 13 O -0.385 6.385 14 C -0.627 4.627 15 H 0.079 0.921 16 C -0.177 4.177 17 N -0.536 5.536 18 Si 0.787 3.213 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.193 1.193 22 C -0.189 4.189 23 H 0.076 0.924 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.110 0.890 27 H 0.096 0.904 28 H 0.168 0.832 29 H 0.164 0.836 30 H 0.140 0.860 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.204 0.796 36 H 0.072 0.928 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.583 -17.607 -9.837 21.216 hybrid contribution 0.474 0.851 1.236 1.574 sum -6.109 -16.756 -8.601 19.800 Atomic orbital electron populations 1.21739 0.94019 1.02645 1.01865 1.20620 0.96645 0.90554 1.04110 1.20029 0.95807 0.97152 0.91675 1.21258 1.03046 0.95031 0.98473 1.21252 0.96078 0.95020 0.97435 1.21475 1.08913 1.01696 0.92969 1.19421 0.96091 0.93010 0.85013 1.86024 1.81074 1.28542 1.29115 1.22730 0.98437 0.79268 0.99321 1.22143 1.02110 0.97799 0.94215 1.19162 0.81713 0.89183 0.92457 0.95412 1.86484 1.21457 1.76500 1.54046 1.21997 1.47461 0.99085 0.94183 0.92071 1.25925 0.93630 0.97332 1.00851 1.70198 1.42420 1.09337 1.31687 0.85572 0.78883 0.77293 0.79602 1.19155 1.20904 1.19309 1.20503 1.06242 0.92383 0.99727 0.92447 0.90629 0.93605 0.88986 0.90446 0.83211 0.83599 0.85999 0.91859 0.92710 0.91503 0.91439 0.79567 0.92840 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.89 71.98 0.71 -1.24 16 2 C -0.08 -1.21 6.06 29.85 0.18 -1.03 16 3 C -0.05 -1.00 5.13 -19.88 -0.10 -1.10 16 4 C -0.16 -3.23 9.70 22.28 0.22 -3.01 16 5 C -0.08 -1.85 10.04 22.25 0.22 -1.63 16 6 C -0.23 -6.81 9.04 22.36 0.20 -6.61 16 7 C 0.11 3.52 6.69 22.50 0.15 3.67 16 8 O -0.33 -12.14 10.14 -92.45 -0.94 -13.08 16 9 C 0.08 2.90 4.64 71.98 0.33 3.23 16 10 C -0.12 -5.22 5.20 30.59 0.16 -5.06 16 11 C 0.23 11.86 2.82 29.84 0.08 11.95 16 12 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 13 O -0.58 -29.75 12.27 -148.98 -1.83 -31.58 16 14 C -0.59 -32.45 8.76 25.60 0.22 -32.22 16 15 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 16 C 0.03 1.41 5.40 84.65 0.46 1.87 16 17 N -0.90 -53.64 12.84 21.45 0.28 -53.36 16 18 Si 0.96 43.22 29.54 68.60 2.03 45.24 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 22 C -0.17 -4.61 9.64 22.36 0.22 -4.40 16 23 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 27 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 28 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 29 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 30 H 0.12 3.68 6.30 -2.91 -0.02 3.66 16 31 H 0.06 2.38 7.35 -2.39 -0.02 2.36 16 32 H 0.05 2.04 7.65 -2.39 -0.02 2.02 16 33 H 0.07 2.77 8.14 -2.39 -0.02 2.76 16 34 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.36 16.20 9.04 -74.06 -0.67 15.53 16 36 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -64.92 314.70 2.97 -61.95 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: 0.38 Total: 26.40 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 3.06 Total: -35.57 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.28 Total: -53.36 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -2.76 Total: -44.66 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -64.92 2.97 -61.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.845 kcal (2) G-P(sol) polarization free energy of solvation -64.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds