Wall clock time and date at job start Mon Mar 30 2020 05:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.47181 * 2 1 4 4 C 1.38288 * 119.96659 * 270.01874 * 3 2 1 5 5 C 1.38247 * 120.10908 * 180.02562 * 4 3 2 6 6 C 1.38174 * 120.05314 * 359.67938 * 5 4 3 7 7 C 1.38715 * 119.94442 * 0.57695 * 6 5 4 8 8 O 1.35892 * 120.05873 * 179.72143 * 7 6 5 9 9 C 1.42903 * 116.99621 * 359.72373 * 8 7 6 10 10 C 1.53011 * 109.46960 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47134 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.46922 * 305.00135 * 11 10 9 13 13 O 1.42905 * 109.46921 * 64.99867 * 11 10 9 14 14 C 1.50698 * 109.47342 * 185.00123 * 11 10 9 15 15 H 1.08004 * 119.99528 * 359.97438 * 14 11 10 16 16 C 1.37876 * 120.00356 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00020 * 179.97438 * 16 14 11 18 18 Si 1.86803 * 119.99603 * 359.97438 * 16 14 11 19 19 H 1.48495 * 109.47195 * 90.00782 * 18 16 14 20 20 H 1.48502 * 109.46875 * 210.00223 * 18 16 14 21 21 H 1.48493 * 109.47388 * 330.00132 * 18 16 14 22 22 C 1.38124 * 119.97234 * 90.00041 * 3 2 1 23 23 H 1.09000 * 109.46636 * 60.00358 * 1 2 3 24 24 H 1.09006 * 109.46753 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47183 * 300.00006 * 1 2 3 26 26 H 1.09008 * 109.47452 * 239.99705 * 2 1 3 27 27 H 1.09003 * 109.47319 * 119.99895 * 2 1 3 28 28 H 1.07991 * 119.94965 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.97770 * 179.97438 * 5 4 3 30 30 H 1.08004 * 120.02587 * 180.29672 * 6 5 4 31 31 H 1.09000 * 109.47440 * 60.00531 * 9 8 7 32 32 H 1.08998 * 109.47261 * 299.99489 * 9 8 7 33 33 H 1.09000 * 109.46772 * 59.99924 * 10 9 8 34 34 H 1.08994 * 109.46772 * 300.00177 * 10 9 8 35 35 H 0.96696 * 114.00036 * 60.00010 * 13 11 10 36 36 H 0.97000 * 119.99684 * 179.97438 * 17 16 14 37 37 H 1.07994 * 120.02704 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0722 -1.1980 5 6 2.7236 3.3754 -1.2015 6 6 2.9498 4.0325 -0.0072 7 6 2.7250 3.3795 1.1958 8 8 2.9522 4.0217 2.3717 9 6 3.4279 5.3670 2.2947 10 6 3.6242 5.9202 3.7078 11 6 4.1342 7.3603 3.6254 12 1 5.0380 7.3914 3.0170 13 8 3.1315 8.1874 3.0315 14 6 4.4442 7.8635 5.0117 15 1 4.2923 7.2205 5.8660 16 6 4.9208 9.1450 5.1894 17 7 5.1909 9.5842 6.3992 18 14 5.1829 10.2572 3.7117 19 1 3.9398 11.0234 3.4421 20 1 6.2945 11.2008 3.9933 21 1 5.5229 9.4319 2.5250 22 6 2.2624 2.0714 1.1965 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0811 1.5621 -2.1325 29 1 2.9028 3.8819 -2.1383 30 1 3.3056 5.0523 -0.0104 31 1 2.7006 5.9798 1.7622 32 1 4.3787 5.3863 1.7621 33 1 4.3518 5.3073 4.2399 34 1 2.6737 5.9008 4.2408 35 1 2.2977 8.2075 3.5208 36 1 5.5265 10.4857 6.5242 37 1 2.0828 1.5621 2.1318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232605.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:00 Heat of formation + Delta-G solvation = -106.133195 kcal Electronic energy + Delta-G solvation = -17575.722682 eV Core-core repulsion = 14702.691730 eV Total energy + Delta-G solvation = -2873.030952 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.14773 -39.05703 -38.07717 -34.73015 -34.48690 -33.12692 -31.12604 -29.99398 -28.88331 -25.50871 -24.34097 -23.43816 -22.26596 -21.49695 -19.33801 -18.72876 -17.30039 -17.05515 -16.94253 -16.78495 -16.14772 -15.76090 -15.47877 -14.94365 -14.83945 -14.47134 -14.20380 -14.10770 -13.59161 -13.45378 -13.27201 -12.86298 -12.72768 -12.52375 -12.40430 -12.12943 -11.85826 -11.78668 -11.57306 -11.54823 -11.23021 -10.90298 -10.50694 -9.76199 -9.13776 -8.38978 -6.55232 0.36220 0.50096 1.40701 1.43632 1.57545 2.21171 2.36013 2.80000 2.95072 3.78673 3.85994 3.90863 3.99568 4.12114 4.15571 4.25633 4.37708 4.40687 4.45720 4.53682 4.61616 4.66912 4.71683 4.83061 5.08823 5.10646 5.15999 5.17787 5.38928 5.41174 5.43630 5.44515 5.51456 5.67657 5.89544 6.05349 6.47258 6.58618 7.09513 7.26534 8.75363 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.048660 B = 0.003836 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.288430 B = 7298.324649 C = 7664.563323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.047 4.047 4 C -0.161 4.161 5 C -0.080 4.080 6 C -0.229 4.229 7 C 0.111 3.889 8 O -0.335 6.335 9 C 0.073 3.927 10 C -0.121 4.121 11 C 0.203 3.797 12 H 0.061 0.939 13 O -0.588 6.588 14 C -0.567 4.567 15 H 0.040 0.960 16 C 0.028 3.972 17 N -0.937 5.937 18 Si 0.978 3.022 19 H -0.273 1.273 20 H -0.302 1.302 21 H -0.258 1.258 22 C -0.172 4.172 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.128 0.872 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.377 0.623 36 H 0.269 0.731 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.758 -16.811 -17.459 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 C -0.047 4.047 4 C -0.179 4.179 5 C -0.097 4.097 6 C -0.248 4.248 7 C 0.066 3.934 8 O -0.249 6.249 9 C -0.001 4.001 10 C -0.159 4.159 11 C 0.146 3.854 12 H 0.079 0.921 13 O -0.396 6.396 14 C -0.605 4.605 15 H 0.058 0.942 16 C -0.172 4.172 17 N -0.576 5.576 18 Si 0.805 3.195 19 H -0.198 1.198 20 H -0.230 1.230 21 H -0.183 1.183 22 C -0.190 4.190 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.064 0.936 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.166 0.834 29 H 0.165 0.835 30 H 0.146 0.854 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.225 0.775 36 H 0.078 0.922 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.258 -16.656 -17.587 25.286 hybrid contribution 0.034 0.982 0.611 1.157 sum -7.225 -15.674 -16.976 24.209 Atomic orbital electron populations 1.21737 0.94021 1.02618 1.01876 1.20622 0.96660 0.90711 1.04027 1.20012 0.95885 0.97081 0.91749 1.21259 1.03087 0.95210 0.98359 1.21262 0.96019 0.94894 0.97571 1.21490 1.08873 1.01756 0.92692 1.19391 0.96080 0.92920 0.85051 1.86029 1.81070 1.28696 1.29137 1.22790 0.99012 0.79496 0.98850 1.21964 1.02169 0.97085 0.94670 1.19632 0.88053 0.86018 0.91739 0.92079 1.86295 1.26761 1.71106 1.55436 1.21841 1.45498 0.99532 0.93604 0.94193 1.25885 0.92952 0.99701 0.98686 1.70072 1.45108 1.18679 1.23776 0.85237 0.77070 0.77824 0.79412 1.19837 1.23039 1.18265 1.20498 1.06315 0.92603 0.99609 0.92392 0.90714 0.93599 0.89037 0.90582 0.83355 0.83485 0.85415 0.91048 0.91937 0.91669 0.91482 0.77450 0.92163 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.89 71.98 0.71 -1.17 16 2 C -0.08 -1.18 6.06 29.85 0.18 -0.99 16 3 C -0.05 -0.96 5.13 -19.88 -0.10 -1.06 16 4 C -0.16 -3.02 9.70 22.28 0.22 -2.80 16 5 C -0.08 -1.66 10.04 22.26 0.22 -1.44 16 6 C -0.23 -6.07 9.04 22.37 0.20 -5.87 16 7 C 0.11 3.31 6.69 22.51 0.15 3.46 16 8 O -0.33 -11.41 10.14 -92.34 -0.94 -12.34 16 9 C 0.07 2.44 4.64 71.99 0.33 2.78 16 10 C -0.12 -4.70 5.20 30.60 0.16 -4.54 16 11 C 0.20 9.18 2.30 29.85 0.07 9.25 16 12 H 0.06 2.80 7.20 -2.39 -0.02 2.79 16 13 O -0.59 -24.79 10.57 -148.98 -1.57 -26.36 16 14 C -0.57 -31.68 9.34 25.60 0.24 -31.44 16 15 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 16 C 0.03 1.61 5.47 84.65 0.46 2.07 16 17 N -0.94 -57.85 13.96 21.45 0.30 -57.55 16 18 Si 0.98 46.88 26.18 68.60 1.80 48.68 16 19 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.26 -11.87 6.54 99.48 0.65 -11.21 16 22 C -0.17 -4.45 9.64 22.37 0.22 -4.23 16 23 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.09 0.97 8.09 -2.38 -0.02 0.95 16 27 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 28 H 0.15 1.88 8.06 -2.92 -0.02 1.86 16 29 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 30 H 0.13 3.31 6.30 -2.91 -0.02 3.29 16 31 H 0.07 2.29 7.33 -2.39 -0.02 2.27 16 32 H 0.06 2.00 7.67 -2.39 -0.02 1.98 16 33 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.38 13.94 9.04 -74.06 -0.67 13.27 16 36 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 37 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -66.19 309.64 2.97 -63.22 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.32 Total: 20.34 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 3.06 Total: -35.98 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.30 Total: -57.55 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -2.51 Total: -38.71 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.80 Total: 48.68 kcal Total: -66.19 2.97 -63.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232605.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.914 kcal (2) G-P(sol) polarization free energy of solvation -66.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds