Wall clock time and date at job start Mon Mar 30 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47457 * 2 1 4 4 C 1.38260 * 119.94598 * 90.00121 * 3 2 1 5 5 C 1.38144 * 120.05870 * 180.02562 * 4 3 2 6 6 C 1.38733 * 119.94058 * 359.97438 * 5 4 3 7 7 O 1.35907 * 120.05587 * 180.02562 * 6 5 4 8 8 C 1.42898 * 116.99968 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46767 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46867 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.47398 * 54.99853 * 10 9 8 12 12 O 1.42903 * 109.46726 * 294.99609 * 10 9 8 13 13 C 1.50699 * 109.47083 * 174.99799 * 10 9 8 14 14 H 1.08000 * 119.99792 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99902 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00126 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99745 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47438 * 0.02562 * 17 15 13 19 19 H 1.48491 * 109.47045 * 120.00577 * 17 15 13 20 20 H 1.48501 * 109.46950 * 240.00369 * 17 15 13 21 21 C 1.38727 * 119.89001 * 0.28316 * 6 5 4 22 22 C 1.38147 * 119.94568 * 359.46789 * 21 6 5 23 23 H 1.09006 * 109.47097 * 300.00117 * 1 2 3 24 24 H 1.08999 * 109.47542 * 59.99865 * 1 2 3 25 25 H 1.08994 * 109.47644 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47097 * 239.99883 * 2 1 3 27 27 H 1.08999 * 109.47542 * 120.00135 * 2 1 3 28 28 H 1.08002 * 119.97312 * 0.02562 * 4 3 2 29 29 H 1.07999 * 120.02951 * 179.97438 * 5 4 3 30 30 H 1.09000 * 109.47012 * 60.00133 * 8 7 6 31 31 H 1.09001 * 109.47209 * 300.00049 * 8 7 6 32 32 H 1.08990 * 109.47398 * 60.00182 * 9 8 7 33 33 H 1.09001 * 109.47099 * 299.99875 * 9 8 7 34 34 H 0.96700 * 114.00234 * 300.00043 * 12 10 9 35 35 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 36 36 H 1.08003 * 120.03103 * 179.72134 * 21 6 5 37 37 H 1.07994 * 119.97700 * 180.23670 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2625 2.0715 1.1980 5 6 2.7225 3.3741 1.2007 6 6 2.9542 4.0291 -0.0001 7 8 3.4073 5.3104 -0.0001 8 6 3.6230 5.9222 -1.2734 9 6 4.1294 7.3520 -1.0729 10 6 4.3597 8.0073 -2.4362 11 1 3.4453 7.9488 -3.0266 12 8 5.4130 7.3256 -3.1203 13 6 4.7401 9.4523 -2.2411 14 1 4.8101 9.8625 -1.2444 15 6 4.9987 10.2508 -3.3350 16 7 4.9130 9.7515 -4.5486 17 14 5.4709 12.0419 -3.0930 18 1 5.4977 12.3552 -1.6417 19 1 6.8154 12.2824 -3.6758 20 1 4.4755 12.9119 -3.7694 21 6 2.7174 3.3758 -1.2008 22 6 2.2623 2.0715 -1.1982 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0824 1.5610 2.1326 29 1 2.9017 3.8820 2.1368 30 1 2.6860 5.9428 -1.8300 31 1 4.3641 5.3494 -1.8308 32 1 5.0663 7.3310 -0.5166 33 1 3.3885 7.9250 -0.5153 34 1 6.2587 7.3373 -2.6516 35 1 5.0946 10.3134 -5.3182 36 1 2.8926 3.8851 -2.1370 37 1 2.0814 1.5612 -2.1326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:03 Heat of formation + Delta-G solvation = -107.779732 kcal Electronic energy + Delta-G solvation = -17458.779042 eV Core-core repulsion = 14585.676691 eV Total energy + Delta-G solvation = -2873.102351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.12804 -39.00967 -37.85489 -34.52883 -34.28426 -32.77004 -31.91340 -29.60183 -28.44553 -25.47609 -24.39928 -23.50689 -22.08284 -21.61452 -19.22199 -18.95097 -17.22787 -16.93568 -16.67393 -16.47524 -16.21774 -15.52744 -15.39108 -14.94172 -14.67055 -14.34256 -14.27175 -13.93760 -13.64316 -13.35594 -13.10490 -12.95631 -12.84027 -12.39274 -12.32665 -12.01751 -11.93522 -11.83528 -11.56455 -11.50408 -11.10691 -10.73968 -10.25574 -9.95433 -9.00599 -8.16955 -6.42550 0.39031 0.46440 1.39606 1.41103 1.53427 2.21921 2.41359 2.79474 3.09509 3.83082 3.92683 3.98055 4.00423 4.05477 4.24327 4.33759 4.42604 4.43555 4.50137 4.59640 4.66891 4.74131 4.79677 4.91646 5.05045 5.12843 5.18579 5.20575 5.37212 5.44363 5.45495 5.59461 5.71001 5.71822 5.89839 6.03715 6.47018 6.68942 7.29861 7.49231 8.88089 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.057796 B = 0.003450 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.343638 B = 8113.279688 C = 8366.724700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.126 4.126 4 C -0.078 4.078 5 C -0.164 4.164 6 C 0.100 3.900 7 O -0.333 6.333 8 C 0.077 3.923 9 C -0.125 4.125 10 C 0.232 3.768 11 H 0.028 0.972 12 O -0.580 6.580 13 C -0.587 4.587 14 H 0.061 0.939 15 C 0.024 3.976 16 N -0.900 5.900 17 Si 0.963 3.037 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.278 1.278 21 C -0.221 4.221 22 C -0.084 4.084 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.155 0.845 29 H 0.136 0.864 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.359 0.641 35 H 0.262 0.738 36 H 0.122 0.878 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.173 -17.737 10.061 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.127 4.127 4 C -0.096 4.096 5 C -0.183 4.183 6 C 0.055 3.945 7 O -0.247 6.247 8 C 0.002 3.998 9 C -0.163 4.163 10 C 0.174 3.826 11 H 0.046 0.954 12 O -0.385 6.385 13 C -0.624 4.624 14 H 0.079 0.921 15 C -0.178 4.178 16 N -0.537 5.537 17 Si 0.787 3.213 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.240 4.240 22 C -0.102 4.102 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.173 0.827 29 H 0.154 0.846 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.204 0.796 35 H 0.071 0.929 36 H 0.140 0.860 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.605 -17.679 9.593 21.171 hybrid contribution 0.674 1.426 -0.169 1.586 sum -5.932 -16.253 9.424 19.702 Atomic orbital electron populations 1.21759 0.94490 1.02352 1.01764 1.20508 0.96264 0.90815 1.03763 1.20149 1.01909 0.98071 0.92545 1.21142 0.96646 0.92763 0.99028 1.20693 1.05502 0.96102 0.95961 1.19458 0.95633 0.84058 0.95311 1.86025 1.80682 1.24960 1.33068 1.22721 0.99994 0.94165 0.82887 1.22140 1.01483 0.92613 1.00017 1.19178 0.87146 0.89377 0.86898 0.95417 1.86485 1.21565 1.77995 1.52448 1.22042 1.50162 0.96956 0.93258 0.92102 1.25929 0.94156 1.02952 0.94777 1.70211 1.47483 1.37387 0.98579 0.85461 0.77888 0.79310 0.78624 1.18781 1.20368 1.20413 1.21449 1.07640 0.97791 0.97073 1.21088 0.96950 0.93081 0.99098 0.92801 0.93434 0.90989 0.90476 0.89716 0.82722 0.84583 0.92763 0.91920 0.91424 0.91499 0.79556 0.92863 0.86028 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.89 71.98 0.71 -1.17 16 2 C -0.08 -1.06 6.06 29.85 0.18 -0.87 16 3 C -0.13 -2.57 5.14 -19.85 -0.10 -2.67 16 4 C -0.08 -1.61 9.69 22.25 0.22 -1.39 16 5 C -0.16 -4.28 9.99 22.37 0.22 -4.06 16 6 C 0.10 3.18 6.69 22.51 0.15 3.33 16 7 O -0.33 -12.01 10.14 -92.50 -0.94 -12.95 16 8 C 0.08 2.88 4.64 71.98 0.33 3.22 16 9 C -0.12 -5.20 5.20 30.60 0.16 -5.04 16 10 C 0.23 11.80 2.82 29.85 0.08 11.89 16 11 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 12 O -0.58 -29.71 12.27 -148.98 -1.83 -31.54 16 13 C -0.59 -32.22 8.76 25.60 0.22 -32.00 16 14 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 15 C 0.02 1.36 5.40 84.65 0.46 1.81 16 16 N -0.90 -53.55 12.84 21.45 0.28 -53.27 16 17 Si 0.96 43.26 29.54 68.60 2.03 45.28 16 18 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 21 C -0.22 -6.48 9.04 22.37 0.20 -6.28 16 22 C -0.08 -2.00 9.69 22.26 0.22 -1.78 16 23 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 0.96 8.08 -2.38 -0.02 0.94 16 27 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 28 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 30 H 0.05 2.02 7.65 -2.39 -0.02 2.00 16 31 H 0.06 2.35 7.35 -2.39 -0.02 2.33 16 32 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.36 16.16 9.04 -74.06 -0.67 15.49 16 35 H 0.26 14.71 8.31 -92.71 -0.77 13.93 16 36 H 0.12 3.68 6.30 -2.91 -0.02 3.66 16 37 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -64.70 314.70 2.97 -61.72 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.38 Total: 25.78 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 3.06 Total: -35.02 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.28 Total: -53.27 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -2.76 Total: -44.49 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -64.70 2.97 -61.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.056 kcal (2) G-P(sol) polarization free energy of solvation -64.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds