Wall clock time and date at job start Mon Mar 30 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47199 * 2 1 4 4 C 1.50701 * 109.47074 * 120.00022 * 2 1 3 5 5 C 1.38173 * 120.02920 * 300.00073 * 4 2 1 6 6 C 1.38232 * 120.05823 * 180.02562 * 5 4 2 7 7 C 1.38294 * 120.11124 * 359.97438 * 6 5 4 8 8 C 1.38122 * 120.05499 * 359.97438 * 7 6 5 9 9 C 1.38705 * 120.02828 * 120.25344 * 4 2 1 10 10 O 1.35904 * 120.05924 * 0.02562 * 9 4 2 11 11 C 1.42900 * 117.00131 * 180.25191 * 10 9 4 12 12 C 1.52997 * 109.47009 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.47293 * 54.99914 * 12 11 10 14 14 O 1.42905 * 109.47092 * 295.00264 * 12 11 10 15 15 C 1.50700 * 109.47464 * 175.00168 * 12 11 10 16 16 H 1.08001 * 119.99534 * 359.97438 * 15 12 11 17 17 C 1.37870 * 120.00002 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00311 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99659 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47545 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47115 * 120.00331 * 19 17 15 22 22 H 1.48504 * 109.47321 * 240.00244 * 19 17 15 23 23 H 1.09008 * 109.47010 * 300.00323 * 1 2 3 24 24 H 1.08995 * 109.47037 * 59.99552 * 1 2 3 25 25 H 1.08995 * 109.47201 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46983 * 239.99721 * 2 1 3 27 27 H 1.08995 * 109.47276 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47037 * 300.00449 * 3 2 1 29 29 H 1.09001 * 109.46751 * 59.99996 * 3 2 1 30 30 H 1.08008 * 119.97043 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.94710 * 179.97438 * 6 5 4 32 32 H 1.07999 * 119.97251 * 180.02562 * 7 6 5 33 33 H 1.08002 * 120.02504 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.46950 * 300.00206 * 11 10 9 35 35 H 1.08994 * 109.46928 * 60.00366 * 11 10 9 36 36 H 0.96700 * 113.99659 * 299.99804 * 14 12 11 37 37 H 0.97000 * 120.00171 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6989 -0.2389 2.4857 6 6 2.1598 -0.8898 3.6148 7 6 2.9550 -2.0144 3.4913 8 6 3.2903 -2.4904 2.2388 9 6 2.8341 -1.8351 1.1039 10 8 3.1682 -2.2977 -0.1296 11 6 3.9924 -3.4638 -0.1839 12 6 4.2611 -3.8307 -1.6447 13 1 4.6885 -2.9720 -2.1624 14 8 3.0345 -4.2049 -2.2752 15 6 5.2284 -4.9849 -1.7031 16 1 5.6133 -5.4135 -0.7895 17 6 5.6219 -5.4936 -2.9226 18 7 5.1535 -4.9713 -4.0350 19 14 6.8214 -6.9237 -2.9948 20 1 7.1965 -7.3255 -1.6153 21 1 6.1823 -8.0713 -3.6876 22 1 8.0387 -6.5118 -3.7391 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.0783 0.6395 2.5848 31 1 1.8984 -0.5194 4.5951 32 1 3.3135 -2.5214 4.3749 33 1 3.9111 -3.3690 2.1429 34 1 4.9380 -3.2641 0.3201 35 1 3.4843 -4.2911 0.3114 36 1 2.5976 -4.9643 -1.8660 37 1 5.4306 -5.3290 -4.8930 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:26 Heat of formation + Delta-G solvation = -85.005533 kcal Electronic energy + Delta-G solvation = -18264.605743 eV Core-core repulsion = 15392.490956 eV Total energy + Delta-G solvation = -2872.114788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.97873 -37.41371 -35.33008 -35.14202 -32.21766 -29.92623 -29.78617 -28.38427 -26.97738 -25.19472 -23.31549 -21.94746 -20.81344 -19.67716 -17.90984 -16.78898 -15.86902 -15.40323 -15.31952 -14.68663 -14.49225 -14.25121 -13.71894 -13.65934 -13.48599 -12.83166 -12.77338 -12.35944 -12.16986 -11.79389 -11.75520 -11.50129 -11.13763 -11.01056 -10.97337 -10.91351 -10.40560 -10.35848 -10.27015 -10.12947 -9.11449 -8.69076 -8.63154 -8.30627 -7.75603 -6.11810 -4.32362 1.52868 1.71975 3.21591 3.29529 3.32358 3.82418 3.98564 4.34403 4.84701 4.98863 5.15998 5.19049 5.29236 5.39730 5.40375 5.55585 5.72865 5.74621 5.84991 5.87028 5.94380 5.94785 6.00108 6.16194 6.24575 6.28332 6.42213 6.42816 6.51849 6.65973 6.70738 6.82923 7.06805 7.56902 7.70280 7.94524 8.04316 8.70745 9.29840 9.46160 10.92892 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.029590 B = 0.005231 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.049048 B = 5351.366594 C = 6009.354457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.055 4.055 3 C -0.140 4.140 4 C -0.115 4.115 5 C -0.081 4.081 6 C -0.171 4.171 7 C -0.086 4.086 8 C -0.213 4.213 9 C 0.143 3.857 10 O -0.302 6.302 11 C 0.034 3.966 12 C 0.236 3.764 13 H 0.066 0.934 14 O -0.557 6.557 15 C -0.576 4.576 16 H 0.059 0.941 17 C 0.081 3.919 18 N -0.854 5.854 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.281 1.281 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.345 0.655 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 8.294 11.832 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.073 4.073 3 C -0.197 4.197 4 C -0.116 4.116 5 C -0.099 4.099 6 C -0.190 4.190 7 C -0.104 4.104 8 C -0.231 4.231 9 C 0.096 3.904 10 O -0.215 6.215 11 C -0.041 4.041 12 C 0.178 3.822 13 H 0.083 0.917 14 O -0.359 6.359 15 C -0.614 4.614 16 H 0.077 0.923 17 C -0.126 4.126 18 N -0.489 5.489 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.207 1.207 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.188 0.812 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.275 8.879 11.023 15.483 hybrid contribution 0.813 -1.520 0.612 1.829 sum -5.462 7.359 11.635 14.811 Atomic orbital electron populations 1.21819 0.94791 1.01851 1.01167 1.19971 0.95402 0.95522 0.96403 1.21828 1.01272 0.95379 1.01210 1.19219 1.00962 0.95980 0.95409 1.20736 0.98872 0.99092 0.91233 1.20893 1.02039 0.97887 0.98149 1.20870 0.97066 0.95960 0.96530 1.21337 1.06099 1.03143 0.92557 1.19087 0.93304 0.92756 0.85204 1.86229 1.66048 1.44997 1.24233 1.24152 0.92055 0.83910 1.03985 1.19450 0.83395 0.95838 0.83493 0.91655 1.86610 1.38378 1.50922 1.60037 1.21457 1.28855 1.18055 0.93039 0.92275 1.25013 0.95355 0.96704 0.95502 1.70096 1.41345 1.39995 0.97452 0.86515 0.80844 0.82142 0.78296 1.19620 1.20703 1.20692 0.93073 0.92604 0.92600 0.89021 0.92653 0.92594 0.93036 0.86080 0.86586 0.86413 0.85461 0.92517 0.93118 0.81151 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.01 37.16 0.33 -1.39 16 2 C -0.05 -0.79 3.06 -91.77 -0.28 -1.07 16 3 C -0.14 -1.72 9.01 37.16 0.33 -1.38 16 4 C -0.11 -1.79 4.79 -104.47 -0.50 -2.29 16 5 C -0.08 -1.07 8.71 -39.61 -0.35 -1.42 16 6 C -0.17 -2.16 10.04 -39.56 -0.40 -2.55 16 7 C -0.09 -1.16 10.04 -39.60 -0.40 -1.56 16 8 C -0.21 -3.40 9.04 -39.43 -0.36 -3.76 16 9 C 0.14 2.55 6.66 -39.22 -0.26 2.29 16 10 O -0.30 -6.23 8.87 -24.30 -0.22 -6.44 16 11 C 0.03 0.71 4.31 37.16 0.16 0.87 16 12 C 0.24 6.03 3.11 -27.88 -0.09 5.95 16 13 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 14 O -0.56 -14.59 12.70 -40.09 -0.51 -15.10 16 15 C -0.58 -15.51 8.76 -34.44 -0.30 -15.81 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 18 N -0.85 -24.97 12.84 55.43 0.71 -24.26 16 19 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H 0.05 0.55 7.39 -51.92 -0.38 0.16 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 1.58 6.99 -51.93 -0.36 1.22 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.55 7.39 -51.93 -0.38 0.17 16 30 H 0.12 1.31 7.10 -52.48 -0.37 0.93 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.13 1.99 6.30 -52.49 -0.33 1.66 16 34 H 0.06 1.14 7.66 -51.93 -0.40 0.75 16 35 H 0.05 1.00 7.66 -51.93 -0.40 0.61 16 36 H 0.34 7.92 9.04 45.56 0.41 8.34 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 309.61 15.07 4.67 4.67 Total: -1.00 -30.14 309.61 -7.28 -37.42 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.72 Total: 8.02 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -2.19 Total: -19.98 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.71 Total: -24.26 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.72 Total: -21.55 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.14 -7.28 -37.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.589 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds