Wall clock time and date at job start Mon Mar 30 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47199 * 2 1 4 4 C 1.50701 * 109.47074 * 120.00022 * 2 1 3 5 5 C 1.38173 * 120.02920 * 300.00073 * 4 2 1 6 6 C 1.38232 * 120.05823 * 180.02562 * 5 4 2 7 7 C 1.38294 * 120.11124 * 359.97438 * 6 5 4 8 8 C 1.38122 * 120.05499 * 359.97438 * 7 6 5 9 9 C 1.38705 * 120.02828 * 120.25344 * 4 2 1 10 10 O 1.35904 * 120.05924 * 0.02562 * 9 4 2 11 11 C 1.42900 * 117.00131 * 180.25191 * 10 9 4 12 12 C 1.52997 * 109.47009 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.47293 * 54.99914 * 12 11 10 14 14 O 1.42905 * 109.47092 * 295.00264 * 12 11 10 15 15 C 1.50700 * 109.47464 * 175.00168 * 12 11 10 16 16 H 1.08001 * 119.99534 * 359.97438 * 15 12 11 17 17 C 1.37870 * 120.00002 * 179.97438 * 15 12 11 18 18 N 1.31511 * 120.00311 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99659 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47545 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47115 * 120.00331 * 19 17 15 22 22 H 1.48504 * 109.47321 * 240.00244 * 19 17 15 23 23 H 1.09008 * 109.47010 * 300.00323 * 1 2 3 24 24 H 1.08995 * 109.47037 * 59.99552 * 1 2 3 25 25 H 1.08995 * 109.47201 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46983 * 239.99721 * 2 1 3 27 27 H 1.08995 * 109.47276 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47037 * 300.00449 * 3 2 1 29 29 H 1.09001 * 109.46751 * 59.99996 * 3 2 1 30 30 H 1.08008 * 119.97043 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.94710 * 179.97438 * 6 5 4 32 32 H 1.07999 * 119.97251 * 180.02562 * 7 6 5 33 33 H 1.08002 * 120.02504 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.46950 * 300.00206 * 11 10 9 35 35 H 1.08994 * 109.46928 * 60.00366 * 11 10 9 36 36 H 0.96700 * 113.99659 * 299.99804 * 14 12 11 37 37 H 0.97000 * 120.00171 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6989 -0.2389 2.4857 6 6 2.1598 -0.8898 3.6148 7 6 2.9550 -2.0144 3.4913 8 6 3.2903 -2.4904 2.2388 9 6 2.8341 -1.8351 1.1039 10 8 3.1682 -2.2977 -0.1296 11 6 3.9924 -3.4638 -0.1839 12 6 4.2611 -3.8307 -1.6447 13 1 4.6885 -2.9720 -2.1624 14 8 3.0345 -4.2049 -2.2752 15 6 5.2284 -4.9849 -1.7031 16 1 5.6133 -5.4135 -0.7895 17 6 5.6219 -5.4936 -2.9226 18 7 5.1535 -4.9713 -4.0350 19 14 6.8214 -6.9237 -2.9948 20 1 7.1965 -7.3255 -1.6153 21 1 6.1823 -8.0713 -3.6876 22 1 8.0387 -6.5118 -3.7391 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.0783 0.6395 2.5848 31 1 1.8984 -0.5194 4.5951 32 1 3.3135 -2.5214 4.3749 33 1 3.9111 -3.3690 2.1429 34 1 4.9380 -3.2641 0.3201 35 1 3.4843 -4.2911 0.3114 36 1 2.5976 -4.9643 -1.8660 37 1 5.4306 -5.3290 -4.8930 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:26 Heat of formation + Delta-G solvation = -104.082406 kcal Electronic energy + Delta-G solvation = -18265.432979 eV Core-core repulsion = 15392.490956 eV Total energy + Delta-G solvation = -2872.942023 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.24602 -38.87908 -37.24026 -36.21958 -34.34338 -31.41420 -30.97146 -29.92987 -27.96319 -27.07942 -24.54560 -23.34499 -22.44756 -20.85316 -19.55107 -18.47512 -17.31640 -17.05425 -16.71364 -16.44698 -16.18703 -15.37978 -15.08848 -14.98911 -14.75620 -14.50500 -14.13447 -13.83464 -13.25807 -13.15287 -12.96601 -12.86889 -12.83438 -12.81243 -12.48304 -12.10496 -12.03298 -11.78681 -11.49731 -11.47293 -11.09484 -10.79851 -10.34392 -9.73020 -8.99874 -8.21909 -6.50462 0.42522 0.56746 1.40159 1.40441 1.53635 2.25494 2.52102 2.86824 3.05322 3.75118 3.89265 4.05821 4.08178 4.18449 4.27893 4.32805 4.35482 4.42513 4.54623 4.62012 4.66866 4.82352 4.83059 4.93024 4.98622 5.15273 5.23135 5.33653 5.41804 5.47040 5.53191 5.59062 5.62664 5.68995 5.88524 6.00342 6.54884 6.64784 7.24234 7.42555 8.84404 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.029590 B = 0.005231 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.049048 B = 5351.366594 C = 6009.354457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C -0.134 4.134 4 C -0.125 4.125 5 C -0.079 4.079 6 C -0.158 4.158 7 C -0.089 4.089 8 C -0.225 4.225 9 C 0.099 3.901 10 O -0.328 6.328 11 C 0.055 3.945 12 C 0.234 3.766 13 H 0.024 0.976 14 O -0.576 6.576 15 C -0.588 4.588 16 H 0.069 0.931 17 C 0.026 3.974 18 N -0.899 5.899 19 Si 0.971 3.029 20 H -0.259 1.259 21 H -0.277 1.277 22 H -0.278 1.278 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.123 0.877 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.357 0.643 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.850 8.726 14.612 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.077 4.077 3 C -0.191 4.191 4 C -0.125 4.125 5 C -0.097 4.097 6 C -0.176 4.176 7 C -0.107 4.107 8 C -0.244 4.244 9 C 0.054 3.946 10 O -0.242 6.242 11 C -0.020 4.020 12 C 0.176 3.824 13 H 0.042 0.958 14 O -0.380 6.380 15 C -0.625 4.625 16 H 0.087 0.913 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.795 3.205 20 H -0.183 1.183 21 H -0.202 1.202 22 H -0.203 1.203 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.171 0.829 31 H 0.172 0.828 32 H 0.164 0.836 33 H 0.141 0.859 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.202 0.798 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.743 9.316 13.833 17.989 hybrid contribution 0.876 -1.551 -0.162 1.788 sum -5.867 7.765 13.671 16.782 Atomic orbital electron populations 1.21780 0.92995 1.01359 1.02912 1.19967 0.96897 0.96326 0.94496 1.21792 1.00261 0.94116 1.02962 1.19507 1.00653 0.95449 0.96912 1.21107 0.98628 0.99828 0.90153 1.21384 0.99972 0.96620 0.99636 1.21243 0.96777 0.96384 0.96267 1.21459 1.06432 1.03224 0.93271 1.19481 0.95908 0.94727 0.84500 1.86156 1.66604 1.44858 1.26631 1.23616 0.92754 0.84962 1.00634 1.19273 0.83111 0.94321 0.85686 0.95839 1.86541 1.38705 1.51731 1.60987 1.21818 1.28939 1.18224 0.93558 0.91294 1.25975 0.97150 0.99601 0.94985 1.70243 1.43199 1.41895 0.98170 0.85335 0.78131 0.78280 0.78770 1.18317 1.20231 1.20321 0.90515 0.91627 0.94203 0.93304 0.94225 0.91586 0.90492 0.82945 0.82794 0.83560 0.85945 0.92131 0.92047 0.79762 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.01 71.98 0.65 -2.50 16 2 C -0.06 -1.70 3.06 -11.54 -0.04 -1.73 16 3 C -0.13 -3.16 9.01 71.98 0.65 -2.51 16 4 C -0.12 -3.79 4.79 -19.77 -0.09 -3.89 16 5 C -0.08 -1.83 8.71 22.25 0.19 -1.64 16 6 C -0.16 -3.32 10.04 22.28 0.22 -3.10 16 7 C -0.09 -2.15 10.04 22.26 0.22 -1.93 16 8 C -0.23 -7.09 9.04 22.37 0.20 -6.89 16 9 C 0.10 3.60 6.66 22.51 0.15 3.75 16 10 O -0.33 -14.34 8.87 -87.82 -0.78 -15.12 16 11 C 0.06 2.44 4.31 71.98 0.31 2.75 16 12 C 0.23 12.57 3.11 29.85 0.09 12.66 16 13 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 14 O -0.58 -31.65 12.70 -144.34 -1.83 -33.48 16 15 C -0.59 -32.32 8.76 25.60 0.22 -32.10 16 16 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 17 C 0.03 1.45 5.40 84.65 0.46 1.90 16 18 N -0.90 -54.18 12.84 21.44 0.28 -53.91 16 19 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 23 H 0.08 1.40 7.39 -2.38 -0.02 1.39 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 1.82 6.99 -2.39 -0.02 1.80 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.41 7.39 -2.39 -0.02 1.39 16 30 H 0.15 2.53 7.10 -2.91 -0.02 2.51 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.12 3.84 6.30 -2.91 -0.02 3.83 16 34 H 0.06 2.54 7.66 -2.39 -0.02 2.53 16 35 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 36 H 0.36 17.12 9.04 -74.06 -0.67 16.45 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -67.81 309.61 3.32 -64.49 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.39 Total: 28.42 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 3.24 Total: -35.23 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.28 Total: -53.91 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -2.61 Total: -48.60 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -67.81 3.32 -64.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.591 kcal (2) G-P(sol) polarization free energy of solvation -67.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds