Wall clock time and date at job start Mon Mar 30 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46626 * 2 1 4 4 C 1.50693 * 109.47173 * 120.00131 * 2 1 3 5 5 C 1.38163 * 120.02857 * 299.99487 * 4 2 1 6 6 C 1.38251 * 120.05527 * 179.72417 * 5 4 2 7 7 C 1.38281 * 120.11067 * 0.30253 * 6 5 4 8 8 C 1.38128 * 120.05740 * 359.97438 * 7 6 5 9 9 C 1.38719 * 120.02704 * 120.30045 * 4 2 1 10 10 O 1.35898 * 120.05545 * 0.02562 * 9 4 2 11 11 C 1.42899 * 116.99584 * 180.23053 * 10 9 4 12 12 C 1.53008 * 109.46870 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.46892 * 305.00796 * 12 11 10 14 14 O 1.42898 * 109.46741 * 65.00578 * 12 11 10 15 15 C 1.50698 * 109.47011 * 185.00138 * 12 11 10 16 16 H 1.08001 * 120.00091 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99841 * 180.02562 * 15 12 11 18 18 N 1.31508 * 119.99717 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99752 * 180.02562 * 17 15 12 20 20 H 1.48491 * 109.47364 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.46660 * 120.00093 * 19 17 15 22 22 H 1.48498 * 109.46998 * 239.99548 * 19 17 15 23 23 H 1.09007 * 109.46674 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47016 * 299.99428 * 1 2 3 25 25 H 1.08998 * 109.47247 * 60.00257 * 1 2 3 26 26 H 1.09002 * 109.46391 * 240.00601 * 2 1 3 27 27 H 1.09009 * 109.46707 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47098 * 299.99834 * 3 2 1 29 29 H 1.08994 * 109.46956 * 60.00535 * 3 2 1 30 30 H 1.08002 * 119.97507 * 0.02562 * 5 4 2 31 31 H 1.07998 * 119.94295 * 180.27771 * 6 5 4 32 32 H 1.08005 * 119.97244 * 179.97438 * 7 6 5 33 33 H 1.07998 * 120.02980 * 179.97438 * 8 7 6 34 34 H 1.08991 * 109.47595 * 300.00228 * 11 10 9 35 35 H 1.09001 * 109.47308 * 60.00938 * 11 10 9 36 36 H 0.96700 * 114.00076 * 60.00027 * 14 12 11 37 37 H 0.96998 * 119.99940 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6991 -0.2388 2.4856 6 6 2.1549 -0.8935 3.6147 7 6 2.9504 -2.0178 3.4911 8 6 3.2912 -2.4899 2.2386 9 6 2.8351 -1.8347 1.1037 10 8 3.1699 -2.2965 -0.1297 11 6 3.9952 -3.4618 -0.1841 12 6 4.2647 -3.8281 -1.6450 13 1 3.3172 -3.9415 -2.1718 14 8 5.0318 -2.7924 -2.2620 15 6 5.0310 -5.1244 -1.7047 16 1 5.2987 -5.6359 -0.7919 17 6 5.3904 -5.6572 -2.9245 18 7 5.0639 -5.0345 -4.0359 19 14 6.3397 -7.2643 -2.9985 20 1 6.5811 -7.7605 -1.6199 21 1 5.5522 -8.2699 -3.7563 22 1 7.6407 -7.0399 -3.6783 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.0779 0.6391 2.5847 31 1 1.8895 -0.5259 4.5949 32 1 3.3056 -2.5272 4.3748 33 1 3.9129 -3.3677 2.1426 34 1 4.9405 -3.2614 0.3201 35 1 3.4878 -4.2898 0.3108 36 1 5.8898 -2.6363 -1.8441 37 1 5.3171 -5.4092 -4.8940 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232612.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:28 Heat of formation + Delta-G solvation = -85.010387 kcal Electronic energy + Delta-G solvation = -18264.408855 eV Core-core repulsion = 15392.293857 eV Total energy + Delta-G solvation = -2872.114998 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.97881 -37.41410 -35.33073 -35.14216 -32.21779 -29.92531 -29.78592 -28.38420 -26.97693 -25.19442 -23.31551 -21.94750 -20.81358 -19.67665 -17.91013 -16.78943 -15.86920 -15.40736 -15.31533 -14.68652 -14.49342 -14.25103 -13.71873 -13.65813 -13.48736 -12.83015 -12.77468 -12.35950 -12.17074 -11.79440 -11.75390 -11.50199 -11.13780 -11.01057 -10.97289 -10.91322 -10.40619 -10.35822 -10.27008 -10.12993 -9.11433 -8.69057 -8.63124 -8.30619 -7.75581 -6.11850 -4.32338 1.52890 1.71972 3.21588 3.29512 3.32374 3.82436 3.98569 4.34409 4.84708 4.98881 5.15975 5.19053 5.29266 5.39728 5.40340 5.55614 5.72846 5.74643 5.84978 5.87062 5.94364 5.94766 6.00055 6.16188 6.24597 6.28361 6.42169 6.42790 6.51830 6.65961 6.70760 6.82894 7.06819 7.56928 7.70302 7.94546 8.04332 8.70766 9.29850 9.46144 10.92872 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.029584 B = 0.005230 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.218667 B = 5352.039727 C = 6008.792609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.055 4.055 3 C -0.139 4.139 4 C -0.115 4.115 5 C -0.081 4.081 6 C -0.171 4.171 7 C -0.086 4.086 8 C -0.213 4.213 9 C 0.143 3.857 10 O -0.302 6.302 11 C 0.034 3.966 12 C 0.236 3.764 13 H 0.066 0.934 14 O -0.557 6.557 15 C -0.576 4.576 16 H 0.059 0.941 17 C 0.081 3.919 18 N -0.854 5.854 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.281 1.281 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.345 0.655 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.806 8.704 11.835 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.073 4.073 3 C -0.196 4.196 4 C -0.116 4.116 5 C -0.099 4.099 6 C -0.190 4.190 7 C -0.104 4.104 8 C -0.231 4.231 9 C 0.097 3.903 10 O -0.215 6.215 11 C -0.041 4.041 12 C 0.178 3.822 13 H 0.083 0.917 14 O -0.359 6.359 15 C -0.614 4.614 16 H 0.077 0.923 17 C -0.126 4.126 18 N -0.489 5.489 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.207 1.207 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.145 0.855 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.189 0.811 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.389 8.797 11.022 15.482 hybrid contribution 1.160 -1.274 0.613 1.829 sum -5.229 7.522 11.635 14.809 Atomic orbital electron populations 1.21829 0.94844 1.01804 1.01211 1.19971 0.95313 0.95613 0.96403 1.21820 1.01337 0.95311 1.01164 1.19219 1.01002 0.95936 0.95409 1.20737 0.98890 0.99073 0.91233 1.20894 1.02073 0.97855 0.98148 1.20869 0.97045 0.95981 0.96529 1.21336 1.06116 1.03136 0.92557 1.19088 0.93265 0.92790 0.85207 1.86228 1.65801 1.45241 1.24230 1.24155 0.91967 0.84003 1.03986 1.19449 0.93209 0.85874 0.83637 0.91657 1.86608 1.31641 1.57609 1.60089 1.21460 1.39392 1.07495 0.93070 0.92275 1.25017 0.95058 0.97002 0.95501 1.70094 1.43505 1.37793 0.97488 0.86513 0.79743 0.83239 0.78296 1.19619 1.20691 1.20704 0.92658 0.93027 0.92599 0.89026 0.92596 0.92609 0.93067 0.86080 0.86586 0.86413 0.85462 0.93121 0.92512 0.81149 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.01 37.16 0.33 -1.38 16 2 C -0.05 -0.79 3.06 -91.77 -0.28 -1.07 16 3 C -0.14 -1.72 9.01 37.16 0.33 -1.39 16 4 C -0.11 -1.79 4.79 -104.48 -0.50 -2.29 16 5 C -0.08 -1.07 8.71 -39.60 -0.34 -1.42 16 6 C -0.17 -2.16 10.04 -39.56 -0.40 -2.55 16 7 C -0.09 -1.16 10.04 -39.61 -0.40 -1.56 16 8 C -0.21 -3.41 9.04 -39.43 -0.36 -3.76 16 9 C 0.14 2.55 6.66 -39.21 -0.26 2.29 16 10 O -0.30 -6.23 8.87 -24.27 -0.22 -6.44 16 11 C 0.03 0.71 4.31 37.16 0.16 0.87 16 12 C 0.24 6.04 3.11 -27.88 -0.09 5.95 16 13 H 0.07 1.85 8.14 -51.93 -0.42 1.42 16 14 O -0.56 -14.59 12.70 -40.08 -0.51 -15.10 16 15 C -0.58 -15.51 8.76 -34.44 -0.30 -15.81 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 18 N -0.85 -24.97 12.84 55.43 0.71 -24.26 16 19 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.55 7.39 -51.93 -0.38 0.17 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 1.58 6.99 -51.93 -0.36 1.22 16 27 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.55 7.39 -51.93 -0.38 0.16 16 30 H 0.12 1.31 7.10 -52.49 -0.37 0.93 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.13 1.99 6.30 -52.49 -0.33 1.66 16 34 H 0.05 1.00 7.66 -51.93 -0.40 0.61 16 35 H 0.06 1.14 7.66 -51.93 -0.40 0.75 16 36 H 0.34 7.93 9.04 45.56 0.41 8.34 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 309.61 15.07 4.67 4.67 Total: -1.00 -30.14 309.61 -7.28 -37.42 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.72 Total: 8.02 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -2.19 Total: -19.98 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.71 Total: -24.26 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.72 Total: -21.54 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.14 -7.28 -37.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232612.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.594 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds