Wall clock time and date at job start Mon Mar 30 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46626 * 2 1 4 4 C 1.50693 * 109.47173 * 120.00131 * 2 1 3 5 5 C 1.38163 * 120.02857 * 299.99487 * 4 2 1 6 6 C 1.38251 * 120.05527 * 179.72417 * 5 4 2 7 7 C 1.38281 * 120.11067 * 0.30253 * 6 5 4 8 8 C 1.38128 * 120.05740 * 359.97438 * 7 6 5 9 9 C 1.38719 * 120.02704 * 120.30045 * 4 2 1 10 10 O 1.35898 * 120.05545 * 0.02562 * 9 4 2 11 11 C 1.42899 * 116.99584 * 180.23053 * 10 9 4 12 12 C 1.53008 * 109.46870 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.46892 * 305.00796 * 12 11 10 14 14 O 1.42898 * 109.46741 * 65.00578 * 12 11 10 15 15 C 1.50698 * 109.47011 * 185.00138 * 12 11 10 16 16 H 1.08001 * 120.00091 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99841 * 180.02562 * 15 12 11 18 18 N 1.31508 * 119.99717 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 119.99752 * 180.02562 * 17 15 12 20 20 H 1.48491 * 109.47364 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.46660 * 120.00093 * 19 17 15 22 22 H 1.48498 * 109.46998 * 239.99548 * 19 17 15 23 23 H 1.09007 * 109.46674 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47016 * 299.99428 * 1 2 3 25 25 H 1.08998 * 109.47247 * 60.00257 * 1 2 3 26 26 H 1.09002 * 109.46391 * 240.00601 * 2 1 3 27 27 H 1.09009 * 109.46707 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47098 * 299.99834 * 3 2 1 29 29 H 1.08994 * 109.46956 * 60.00535 * 3 2 1 30 30 H 1.08002 * 119.97507 * 0.02562 * 5 4 2 31 31 H 1.07998 * 119.94295 * 180.27771 * 6 5 4 32 32 H 1.08005 * 119.97244 * 179.97438 * 7 6 5 33 33 H 1.07998 * 120.02980 * 179.97438 * 8 7 6 34 34 H 1.08991 * 109.47595 * 300.00228 * 11 10 9 35 35 H 1.09001 * 109.47308 * 60.00938 * 11 10 9 36 36 H 0.96700 * 114.00076 * 60.00027 * 14 12 11 37 37 H 0.96998 * 119.99940 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6991 -0.2388 2.4856 6 6 2.1549 -0.8935 3.6147 7 6 2.9504 -2.0178 3.4911 8 6 3.2912 -2.4899 2.2386 9 6 2.8351 -1.8347 1.1037 10 8 3.1699 -2.2965 -0.1297 11 6 3.9952 -3.4618 -0.1841 12 6 4.2647 -3.8281 -1.6450 13 1 3.3172 -3.9415 -2.1718 14 8 5.0318 -2.7924 -2.2620 15 6 5.0310 -5.1244 -1.7047 16 1 5.2987 -5.6359 -0.7919 17 6 5.3904 -5.6572 -2.9245 18 7 5.0639 -5.0345 -4.0359 19 14 6.3397 -7.2643 -2.9985 20 1 6.5811 -7.7605 -1.6199 21 1 5.5522 -8.2699 -3.7563 22 1 7.6407 -7.0399 -3.6783 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.0779 0.6391 2.5847 31 1 1.8895 -0.5259 4.5949 32 1 3.3056 -2.5272 4.3748 33 1 3.9129 -3.3677 2.1426 34 1 4.9405 -3.2614 0.3201 35 1 3.4878 -4.2898 0.3108 36 1 5.8898 -2.6363 -1.8441 37 1 5.3171 -5.4092 -4.8940 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232612.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:28 Heat of formation + Delta-G solvation = -104.087277 kcal Electronic energy + Delta-G solvation = -18265.236091 eV Core-core repulsion = 15392.293857 eV Total energy + Delta-G solvation = -2872.942234 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.24627 -38.87941 -37.24098 -36.21977 -34.34355 -31.41359 -30.97098 -29.92988 -27.96279 -27.07903 -24.54575 -23.34512 -22.44785 -20.85264 -19.55146 -18.47565 -17.31663 -17.05474 -16.71414 -16.44542 -16.18848 -15.37984 -15.08614 -14.99204 -14.75564 -14.50534 -14.13414 -13.83489 -13.25903 -13.15265 -12.96630 -12.86896 -12.83362 -12.81265 -12.48332 -12.10469 -12.03247 -11.78722 -11.49806 -11.47274 -11.09484 -10.79830 -10.34387 -9.73000 -8.99854 -8.21946 -6.50439 0.42537 0.56735 1.40168 1.40429 1.53663 2.25516 2.52110 2.86821 3.05299 3.75127 3.89255 4.05810 4.08131 4.18482 4.27907 4.32811 4.35458 4.42511 4.54641 4.61975 4.66860 4.82363 4.83060 4.92964 4.98606 5.15267 5.23145 5.33619 5.41760 5.47056 5.53194 5.59078 5.62673 5.68978 5.88543 6.00349 6.54894 6.64795 7.24207 7.42570 8.84386 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.029584 B = 0.005230 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.218667 B = 5352.039727 C = 6008.792609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.058 4.058 3 C -0.133 4.133 4 C -0.125 4.125 5 C -0.079 4.079 6 C -0.158 4.158 7 C -0.089 4.089 8 C -0.225 4.225 9 C 0.099 3.901 10 O -0.328 6.328 11 C 0.055 3.945 12 C 0.234 3.766 13 H 0.024 0.976 14 O -0.576 6.576 15 C -0.588 4.588 16 H 0.069 0.931 17 C 0.026 3.974 18 N -0.899 5.899 19 Si 0.971 3.029 20 H -0.259 1.259 21 H -0.278 1.278 22 H -0.277 1.277 23 H 0.039 0.961 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.123 0.877 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.357 0.643 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.080 9.268 14.616 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.077 4.077 3 C -0.191 4.191 4 C -0.125 4.125 5 C -0.097 4.097 6 C -0.176 4.176 7 C -0.107 4.107 8 C -0.244 4.244 9 C 0.054 3.946 10 O -0.242 6.242 11 C -0.020 4.020 12 C 0.176 3.824 13 H 0.042 0.958 14 O -0.380 6.380 15 C -0.626 4.626 16 H 0.087 0.913 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.795 3.205 20 H -0.183 1.183 21 H -0.203 1.203 22 H -0.202 1.202 23 H 0.058 0.942 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.171 0.829 31 H 0.172 0.828 32 H 0.164 0.836 33 H 0.141 0.859 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.202 0.798 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.666 9.369 13.833 17.987 hybrid contribution 1.173 -1.341 -0.161 1.789 sum -5.493 8.028 13.672 16.779 Atomic orbital electron populations 1.21793 0.93014 1.01356 1.02962 1.19967 0.96844 0.96381 0.94496 1.21782 1.00278 0.94082 1.02911 1.19506 1.00686 0.95414 0.96912 1.21108 0.98638 0.99815 0.90153 1.21384 1.00007 0.96586 0.99635 1.21242 0.96754 0.96408 0.96265 1.21458 1.06461 1.03202 0.93271 1.19482 0.95876 0.94755 0.84502 1.86155 1.66404 1.45055 1.26628 1.23618 0.92842 0.84874 1.00638 1.19272 0.91351 0.85946 0.85817 0.95840 1.86539 1.32587 1.57795 1.61042 1.21821 1.39138 1.08004 0.93589 0.91295 1.25979 0.95990 1.00762 0.94985 1.70242 1.45103 1.39950 0.98205 0.85333 0.78049 0.78359 0.78769 1.18316 1.20321 1.20230 0.94206 0.90486 0.91592 0.93307 0.94226 0.91633 0.90505 0.82944 0.82795 0.83560 0.85947 0.92052 0.92126 0.79760 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.01 71.98 0.65 -2.50 16 2 C -0.06 -1.70 3.06 -11.54 -0.04 -1.73 16 3 C -0.13 -3.16 9.01 71.98 0.65 -2.51 16 4 C -0.12 -3.79 4.79 -19.77 -0.09 -3.89 16 5 C -0.08 -1.83 8.71 22.26 0.19 -1.64 16 6 C -0.16 -3.32 10.04 22.28 0.22 -3.10 16 7 C -0.09 -2.15 10.04 22.25 0.22 -1.93 16 8 C -0.23 -7.10 9.04 22.37 0.20 -6.89 16 9 C 0.10 3.60 6.66 22.51 0.15 3.75 16 10 O -0.33 -14.34 8.87 -87.76 -0.78 -15.11 16 11 C 0.06 2.43 4.31 71.98 0.31 2.74 16 12 C 0.23 12.57 3.11 29.85 0.09 12.66 16 13 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 14 O -0.58 -31.65 12.70 -144.34 -1.83 -33.48 16 15 C -0.59 -32.33 8.76 25.60 0.22 -32.10 16 16 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 17 C 0.03 1.45 5.40 84.66 0.46 1.90 16 18 N -0.90 -54.18 12.84 21.45 0.28 -53.90 16 19 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 20 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 23 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 24 H 0.08 1.40 7.39 -2.39 -0.02 1.39 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.82 6.99 -2.39 -0.02 1.80 16 27 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.41 7.39 -2.39 -0.02 1.39 16 30 H 0.15 2.53 7.10 -2.91 -0.02 2.51 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.12 3.84 6.30 -2.91 -0.02 3.82 16 34 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 35 H 0.06 2.55 7.66 -2.39 -0.02 2.53 16 36 H 0.36 17.12 9.04 -74.06 -0.67 16.45 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -67.81 309.61 3.32 -64.49 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 0.39 Total: 28.42 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 3.24 Total: -35.24 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.28 Total: -53.90 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -2.61 Total: -48.60 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -67.81 3.32 -64.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232612.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.595 kcal (2) G-P(sol) polarization free energy of solvation -67.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds