Wall clock time and date at job start Mon Mar 30 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47281 * 2 1 4 4 C 1.50700 * 109.47275 * 120.00484 * 2 1 3 5 5 C 1.38283 * 119.96828 * 299.97335 * 4 2 1 6 6 C 1.38250 * 120.10833 * 180.02562 * 5 4 2 7 7 C 1.38161 * 120.05519 * 359.68180 * 6 5 4 8 8 C 1.38712 * 119.94538 * 0.61662 * 7 6 5 9 9 O 1.35904 * 120.05836 * 179.67995 * 8 7 6 10 10 C 1.42892 * 116.99883 * 359.72221 * 9 8 7 11 11 C 1.52996 * 109.47125 * 180.02562 * 10 9 8 12 12 H 1.09004 * 109.47066 * 55.00407 * 11 10 9 13 13 O 1.42903 * 109.47446 * 295.00283 * 11 10 9 14 14 C 1.50702 * 109.47159 * 175.00204 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 11 10 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 11 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 11 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.38121 * 119.97080 * 119.99987 * 4 2 1 23 23 H 1.09002 * 109.47613 * 59.99674 * 1 2 3 24 24 H 1.09000 * 109.47332 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46837 * 299.99774 * 1 2 3 26 26 H 1.09001 * 109.46837 * 240.00226 * 2 1 3 27 27 H 1.09001 * 109.47665 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47507 * 300.00368 * 3 2 1 29 29 H 1.09001 * 109.47000 * 60.00327 * 3 2 1 30 30 H 1.07998 * 119.95043 * 0.02562 * 5 4 2 31 31 H 1.08006 * 119.97048 * 179.97438 * 6 5 4 32 32 H 1.08004 * 120.03151 * 180.29920 * 7 6 5 33 33 H 1.09005 * 109.47380 * 60.00192 * 10 9 8 34 34 H 1.09000 * 109.47834 * 300.00386 * 10 9 8 35 35 H 0.96697 * 113.99557 * 300.00558 * 13 11 10 36 36 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 37 37 H 1.07995 * 120.02986 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6983 -0.2373 2.4861 6 6 2.1581 -0.8865 3.6168 7 6 2.9472 -2.0140 3.4946 8 6 3.2887 -2.4871 2.2361 9 8 4.0702 -3.5921 2.1133 10 6 4.5097 -4.2135 3.3227 11 6 5.3720 -5.4317 2.9860 12 1 6.1891 -5.1287 2.3312 13 8 4.5715 -6.4141 2.3255 14 6 5.9359 -6.0145 4.2562 15 1 5.7023 -5.5616 5.2085 16 6 6.7450 -7.1297 4.2032 17 7 7.2327 -7.6416 5.3122 18 14 7.1486 -7.9134 2.5563 19 1 8.3822 -7.2981 2.0043 20 1 7.3626 -9.3713 2.7411 21 1 6.0217 -7.6940 1.6143 22 6 2.8264 -1.8334 1.1028 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.0774 0.6409 2.5837 31 1 1.8962 -0.5147 4.5964 32 1 3.3021 -2.5237 4.3782 33 1 3.6438 -4.5303 3.9040 34 1 5.0970 -3.5026 3.9039 35 1 3.8238 -6.7301 2.8509 36 1 7.8022 -8.4259 5.2748 37 1 3.0876 -2.2021 0.1220 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232614.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:31 Heat of formation + Delta-G solvation = -80.622757 kcal Electronic energy + Delta-G solvation = -17842.795612 eV Core-core repulsion = 14970.870876 eV Total energy + Delta-G solvation = -2871.924736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.97255 -37.98162 -35.94018 -34.76645 -32.35534 -30.73499 -29.39832 -28.70855 -27.29748 -25.42974 -23.08162 -22.43694 -20.82478 -19.86969 -17.75678 -17.03800 -15.88790 -15.72280 -15.58070 -14.92761 -14.73266 -14.46575 -13.85189 -13.74496 -13.46342 -13.28428 -12.96922 -12.53061 -12.45672 -12.00558 -11.91361 -11.74955 -11.37633 -11.28560 -10.97108 -10.87419 -10.63515 -10.55014 -10.34394 -9.97074 -9.14297 -8.73701 -8.69728 -8.42684 -7.89631 -6.23097 -4.37450 1.45576 1.64556 3.35786 3.45123 3.68821 3.72123 3.90626 4.47050 4.62739 4.74222 5.01375 5.05816 5.10763 5.26866 5.27183 5.42829 5.45076 5.54363 5.62415 5.65545 5.67545 5.76414 5.81192 5.90330 5.98146 6.08222 6.08481 6.16400 6.28215 6.53528 6.62245 6.70441 6.96077 7.17057 7.40390 7.87485 8.15578 8.69492 8.92586 9.39403 10.86683 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.044253 B = 0.004266 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.568093 B = 6562.216138 C = 6914.593416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.042 4.042 5 C -0.166 4.166 6 C -0.078 4.078 7 C -0.217 4.217 8 C 0.144 3.856 9 O -0.309 6.309 10 C 0.043 3.957 11 C 0.201 3.799 12 H 0.065 0.935 13 O -0.574 6.574 14 C -0.570 4.570 15 H 0.075 0.925 16 C 0.088 3.912 17 N -0.888 5.888 18 Si 0.871 3.129 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.216 1.216 22 C -0.159 4.159 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.356 0.644 36 H 0.268 0.732 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.088 15.258 -7.903 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.042 4.042 5 C -0.184 4.184 6 C -0.096 4.096 7 C -0.236 4.236 8 C 0.098 3.902 9 O -0.222 6.222 10 C -0.032 4.032 11 C 0.144 3.856 12 H 0.083 0.917 13 O -0.380 6.380 14 C -0.607 4.607 15 H 0.093 0.907 16 C -0.117 4.117 17 N -0.524 5.524 18 Si 0.697 3.303 19 H -0.211 1.211 20 H -0.220 1.220 21 H -0.138 1.138 22 C -0.177 4.177 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.203 0.797 36 H 0.077 0.923 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.472 15.112 -8.469 20.777 hybrid contribution 0.043 -0.509 0.320 0.603 sum -11.430 14.603 -8.149 20.255 Atomic orbital electron populations 1.21844 0.94333 1.02108 1.01721 1.20121 0.95919 0.95982 0.95495 1.21845 1.01382 0.95058 1.01725 1.19556 0.95816 0.94192 0.94667 1.20735 1.04072 1.01740 0.91856 1.20883 0.95960 0.94397 0.98390 1.21361 1.04906 1.00441 0.96879 1.19186 0.90392 0.87126 0.93532 1.86196 1.62682 1.38028 1.35329 1.23855 0.98460 0.96435 0.84452 1.19825 0.88842 0.82829 0.94140 0.91685 1.86722 1.43843 1.60028 1.47368 1.21271 1.32398 1.14346 0.92684 0.90700 1.24933 0.93628 0.95866 0.97312 1.69933 1.32187 1.22513 1.27729 0.87004 0.80056 0.77617 0.85601 1.21116 1.21983 1.13815 1.20314 1.02663 0.97399 0.97372 0.92522 0.92442 0.92446 0.90399 0.92449 0.92521 0.92442 0.86522 0.86206 0.85350 0.92446 0.91878 0.79738 0.92276 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.01 37.16 0.33 -0.88 16 2 C -0.06 -0.56 3.09 -91.78 -0.28 -0.84 16 3 C -0.14 -1.22 9.01 37.16 0.33 -0.88 16 4 C -0.04 -0.53 4.78 -104.65 -0.50 -1.03 16 5 C -0.17 -2.00 8.71 -39.56 -0.34 -2.35 16 6 C -0.08 -1.02 10.04 -39.61 -0.40 -1.41 16 7 C -0.22 -3.35 9.04 -39.43 -0.36 -3.71 16 8 C 0.14 2.47 6.69 -39.21 -0.26 2.21 16 9 O -0.31 -6.12 10.10 -24.29 -0.25 -6.36 16 10 C 0.04 0.86 4.31 37.16 0.16 1.02 16 11 C 0.20 4.76 2.59 -27.88 -0.07 4.69 16 12 H 0.07 1.60 7.58 -51.93 -0.39 1.20 16 13 O -0.57 -13.30 10.10 -40.09 -0.40 -13.71 16 14 C -0.57 -15.56 9.34 -34.44 -0.32 -15.88 16 15 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 16 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 17 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 18 Si 0.87 21.64 26.99 -169.99 -4.59 17.05 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.22 -5.30 5.30 56.52 0.30 -5.00 16 22 C -0.16 -2.38 9.61 -39.43 -0.38 -2.76 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.46 7.39 -51.93 -0.38 0.08 16 26 H 0.08 0.75 7.87 -51.93 -0.41 0.34 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.47 7.38 -51.93 -0.38 0.08 16 30 H 0.12 1.15 7.10 -52.49 -0.37 0.77 16 31 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 32 H 0.13 1.95 6.30 -52.48 -0.33 1.62 16 33 H 0.06 1.09 7.65 -51.93 -0.40 0.70 16 34 H 0.06 1.24 7.67 -51.93 -0.40 0.84 16 35 H 0.36 7.21 9.04 45.56 0.41 7.62 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.13 1.80 7.94 -52.49 -0.42 1.38 16 LS Contribution 305.19 15.07 4.60 4.60 Total: -1.00 -30.73 305.19 -6.89 -37.62 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -4.84 Total: 6.04 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -2.19 Total: -19.42 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.77 Total: -25.83 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.65 Total: -20.07 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.59 Total: 17.05 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.73 -6.89 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232614.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.999 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds