Wall clock time and date at job start Mon Mar 30 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47281 * 2 1 4 4 C 1.50700 * 109.47275 * 120.00484 * 2 1 3 5 5 C 1.38283 * 119.96828 * 299.97335 * 4 2 1 6 6 C 1.38250 * 120.10833 * 180.02562 * 5 4 2 7 7 C 1.38161 * 120.05519 * 359.68180 * 6 5 4 8 8 C 1.38712 * 119.94538 * 0.61662 * 7 6 5 9 9 O 1.35904 * 120.05836 * 179.67995 * 8 7 6 10 10 C 1.42892 * 116.99883 * 359.72221 * 9 8 7 11 11 C 1.52996 * 109.47125 * 180.02562 * 10 9 8 12 12 H 1.09004 * 109.47066 * 55.00407 * 11 10 9 13 13 O 1.42903 * 109.47446 * 295.00283 * 11 10 9 14 14 C 1.50702 * 109.47159 * 175.00204 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 11 10 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 11 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 11 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.38121 * 119.97080 * 119.99987 * 4 2 1 23 23 H 1.09002 * 109.47613 * 59.99674 * 1 2 3 24 24 H 1.09000 * 109.47332 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46837 * 299.99774 * 1 2 3 26 26 H 1.09001 * 109.46837 * 240.00226 * 2 1 3 27 27 H 1.09001 * 109.47665 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47507 * 300.00368 * 3 2 1 29 29 H 1.09001 * 109.47000 * 60.00327 * 3 2 1 30 30 H 1.07998 * 119.95043 * 0.02562 * 5 4 2 31 31 H 1.08006 * 119.97048 * 179.97438 * 6 5 4 32 32 H 1.08004 * 120.03151 * 180.29920 * 7 6 5 33 33 H 1.09005 * 109.47380 * 60.00192 * 10 9 8 34 34 H 1.09000 * 109.47834 * 300.00386 * 10 9 8 35 35 H 0.96697 * 113.99557 * 300.00558 * 13 11 10 36 36 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 37 37 H 1.07995 * 120.02986 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6983 -0.2373 2.4861 6 6 2.1581 -0.8865 3.6168 7 6 2.9472 -2.0140 3.4946 8 6 3.2887 -2.4871 2.2361 9 8 4.0702 -3.5921 2.1133 10 6 4.5097 -4.2135 3.3227 11 6 5.3720 -5.4317 2.9860 12 1 6.1891 -5.1287 2.3312 13 8 4.5715 -6.4141 2.3255 14 6 5.9359 -6.0145 4.2562 15 1 5.7023 -5.5616 5.2085 16 6 6.7450 -7.1297 4.2032 17 7 7.2327 -7.6416 5.3122 18 14 7.1486 -7.9134 2.5563 19 1 8.3822 -7.2981 2.0043 20 1 7.3626 -9.3713 2.7411 21 1 6.0217 -7.6940 1.6143 22 6 2.8264 -1.8334 1.1028 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.0774 0.6409 2.5837 31 1 1.8962 -0.5147 4.5964 32 1 3.3021 -2.5237 4.3782 33 1 3.6438 -4.5303 3.9040 34 1 5.0970 -3.5026 3.9039 35 1 3.8238 -6.7301 2.8509 36 1 7.8022 -8.4259 5.2748 37 1 3.0876 -2.2021 0.1220 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232614.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:30 Heat of formation + Delta-G solvation = -100.203599 kcal Electronic energy + Delta-G solvation = -17843.644701 eV Core-core repulsion = 14970.870876 eV Total energy + Delta-G solvation = -2872.773825 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.18267 -39.26938 -37.65903 -35.74476 -34.51200 -32.00610 -30.83579 -30.01095 -27.93507 -27.26748 -24.23281 -23.54596 -22.52274 -21.01385 -19.50892 -18.40954 -17.28270 -17.21072 -16.93766 -16.69295 -16.03815 -15.82974 -15.23054 -14.97263 -14.66873 -14.45573 -14.28545 -13.91179 -13.76370 -13.25581 -13.06118 -12.90951 -12.84549 -12.66552 -12.39464 -12.09738 -11.88312 -11.69765 -11.65556 -11.47313 -11.16553 -10.89350 -10.34234 -9.76004 -9.09926 -8.42680 -6.60208 0.37959 0.52312 1.38064 1.43330 1.73308 2.28870 2.39999 2.81739 2.94812 3.73585 3.87081 3.90045 4.02700 4.11907 4.17857 4.27520 4.35351 4.39116 4.45271 4.57143 4.62453 4.74581 4.86363 5.03358 5.03797 5.06768 5.23093 5.27051 5.32814 5.33057 5.43646 5.43684 5.54900 5.70192 5.92416 5.98109 6.50060 6.52640 7.08958 7.23265 8.70561 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.044253 B = 0.004266 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.568093 B = 6562.216138 C = 6914.593416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.141 4.141 4 C -0.038 4.038 5 C -0.157 4.157 6 C -0.078 4.078 7 C -0.231 4.231 8 C 0.110 3.890 9 O -0.329 6.329 10 C 0.059 3.941 11 C 0.206 3.794 12 H 0.057 0.943 13 O -0.578 6.578 14 C -0.570 4.570 15 H 0.047 0.953 16 C 0.037 3.963 17 N -0.931 5.931 18 Si 0.936 3.064 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.210 1.210 22 C -0.172 4.172 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.370 0.630 36 H 0.271 0.729 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.744 17.092 -9.242 23.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.198 4.198 4 C -0.038 4.038 5 C -0.175 4.175 6 C -0.096 4.096 7 C -0.250 4.250 8 C 0.065 3.935 9 O -0.243 6.243 10 C -0.017 4.017 11 C 0.148 3.852 12 H 0.075 0.925 13 O -0.385 6.385 14 C -0.607 4.607 15 H 0.065 0.935 16 C -0.164 4.164 17 N -0.569 5.569 18 Si 0.759 3.241 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.132 1.132 22 C -0.191 4.191 23 H 0.092 0.908 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.166 0.834 31 H 0.165 0.835 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.218 0.782 36 H 0.080 0.920 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.149 16.964 -9.809 23.598 hybrid contribution 0.451 -0.941 0.755 1.288 sum -12.698 16.023 -9.054 22.359 Atomic orbital electron populations 1.21836 0.93006 1.01894 1.03022 1.20204 0.96916 0.96483 0.93992 1.21838 1.00766 0.94144 1.03025 1.19932 0.94441 0.93141 0.96335 1.21135 1.03140 1.02043 0.91152 1.21235 0.94832 0.93319 1.00211 1.21454 1.05903 1.01618 0.96039 1.19487 0.91759 0.87255 0.95049 1.86104 1.64004 1.39572 1.34628 1.23420 0.98196 0.95240 0.84805 1.19573 0.89440 0.84104 0.92052 0.92514 1.86647 1.44373 1.60063 1.47463 1.21521 1.32001 1.14006 0.93206 0.93496 1.25745 0.93692 0.96606 1.00370 1.70037 1.33588 1.23489 1.29773 0.86015 0.79826 0.76612 0.81601 1.20898 1.21745 1.13229 1.20509 1.03425 0.98331 0.96812 0.90768 0.93421 0.91666 0.90533 0.93449 0.90761 0.91666 0.83405 0.83475 0.85908 0.91750 0.91971 0.78209 0.92005 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.01 71.98 0.65 -1.29 16 2 C -0.06 -0.98 3.09 -11.54 -0.04 -1.01 16 3 C -0.14 -1.95 9.01 71.98 0.65 -1.30 16 4 C -0.04 -0.89 4.78 -19.88 -0.10 -0.98 16 5 C -0.16 -3.31 8.71 22.28 0.19 -3.11 16 6 C -0.08 -1.85 10.04 22.25 0.22 -1.63 16 7 C -0.23 -7.02 9.04 22.36 0.20 -6.82 16 8 C 0.11 3.76 6.69 22.51 0.15 3.91 16 9 O -0.33 -13.15 10.10 -87.83 -0.89 -14.04 16 10 C 0.06 2.39 4.31 71.98 0.31 2.70 16 11 C 0.21 9.78 2.59 29.85 0.08 9.86 16 12 H 0.06 2.79 7.58 -2.38 -0.02 2.77 16 13 O -0.58 -26.34 10.10 -144.34 -1.46 -27.80 16 14 C -0.57 -31.66 9.34 25.60 0.24 -31.42 16 15 H 0.05 2.81 7.99 -2.91 -0.02 2.78 16 16 C 0.04 2.12 5.47 84.66 0.46 2.58 16 17 N -0.93 -56.80 13.96 21.45 0.30 -56.50 16 18 Si 0.94 45.03 26.99 68.60 1.85 46.88 16 19 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 21 H -0.21 -9.85 5.30 99.48 0.53 -9.32 16 22 C -0.17 -5.08 9.61 22.37 0.21 -4.86 16 23 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.80 7.39 -2.39 -0.02 0.79 16 26 H 0.08 1.32 7.87 -2.39 -0.02 1.30 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 0.81 7.38 -2.39 -0.02 0.79 16 30 H 0.15 2.22 7.10 -2.91 -0.02 2.19 16 31 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.12 3.76 6.30 -2.91 -0.02 3.74 16 33 H 0.06 2.49 7.65 -2.38 -0.02 2.47 16 34 H 0.06 2.50 7.67 -2.39 -0.02 2.48 16 35 H 0.37 14.67 9.04 -74.06 -0.67 14.00 16 36 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.13 3.58 7.94 -2.91 -0.02 3.55 16 Total: -1.00 -66.01 305.19 3.25 -62.76 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.21 Total: 22.08 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 3.24 Total: -33.38 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.30 Total: -56.50 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -2.34 Total: -41.84 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.85 Total: 46.88 kcal Total: -66.01 3.25 -62.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232614.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.446 kcal (2) G-P(sol) polarization free energy of solvation -66.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds