Wall clock time and date at job start Mon Mar 30 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46626 * 2 1 4 4 C 1.50690 * 109.47292 * 120.00096 * 2 1 3 5 5 C 1.38291 * 119.97181 * 299.97703 * 4 2 1 6 6 C 1.38251 * 120.11437 * 180.02562 * 5 4 2 7 7 C 1.38171 * 120.05110 * 359.68845 * 6 5 4 8 8 C 1.38711 * 119.94390 * 0.61073 * 7 6 5 9 9 O 1.35893 * 120.05609 * 179.68186 * 8 7 6 10 10 C 1.42904 * 117.00281 * 359.72888 * 9 8 7 11 11 C 1.52997 * 109.47396 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47153 * 304.99576 * 11 10 9 13 13 O 1.42898 * 109.47319 * 64.99884 * 11 10 9 14 14 C 1.50699 * 109.47078 * 184.99783 * 11 10 9 15 15 H 1.07999 * 120.00019 * 359.97438 * 14 11 10 16 16 C 1.37877 * 120.00129 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99723 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99900 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47147 * 90.00197 * 18 16 14 20 20 H 1.48499 * 109.46797 * 209.99607 * 18 16 14 21 21 H 1.48500 * 109.47032 * 329.99738 * 18 16 14 22 22 C 1.38119 * 119.97635 * 119.99823 * 4 2 1 23 23 H 1.09002 * 109.47031 * 299.99843 * 1 2 3 24 24 H 1.09002 * 109.46977 * 60.00196 * 1 2 3 25 25 H 1.09002 * 109.46771 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47031 * 240.00157 * 2 1 3 27 27 H 1.09002 * 109.47287 * 60.00314 * 3 2 1 28 28 H 1.09000 * 109.46847 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47282 * 299.99617 * 3 2 1 30 30 H 1.08000 * 119.94796 * 0.02562 * 5 4 2 31 31 H 1.07994 * 119.97546 * 179.97438 * 6 5 4 32 32 H 1.07999 * 120.02827 * 180.29793 * 7 6 5 33 33 H 1.09001 * 109.46993 * 59.99438 * 10 9 8 34 34 H 1.09004 * 109.46505 * 300.00213 * 10 9 8 35 35 H 0.96698 * 113.99898 * 59.99520 * 13 11 10 36 36 H 0.97003 * 119.99231 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.02789 * 0.02757 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6984 -0.2371 2.4861 6 6 2.1581 -0.8863 3.6169 7 6 2.9474 -2.0137 3.4947 8 6 3.2890 -2.4868 2.2363 9 8 4.0706 -3.5917 2.1136 10 6 4.5101 -4.2131 3.3230 11 6 5.3725 -5.4312 2.9864 12 1 4.8154 -6.1009 2.3313 13 8 6.5653 -5.0026 2.3264 14 6 5.7343 -6.1570 4.2565 15 1 5.3845 -5.7863 5.2087 16 6 6.5128 -7.2937 4.2032 17 7 6.9392 -7.7448 3.0437 18 14 6.9618 -8.1930 5.7777 19 1 5.9273 -9.2157 6.0759 20 1 8.2798 -8.8564 5.6101 21 1 7.0354 -7.2218 6.8986 22 6 2.8264 -1.8333 1.1030 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.0773 0.6410 2.5837 31 1 1.8962 -0.5145 4.5964 32 1 3.3023 -2.5233 4.3783 33 1 3.6441 -4.5299 3.9042 34 1 5.0973 -3.5020 3.9042 35 1 7.1118 -4.4026 2.8521 36 1 7.4872 -8.5444 3.0062 37 1 3.0877 -2.2021 0.1221 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:33 Heat of formation + Delta-G solvation = -86.121936 kcal Electronic energy + Delta-G solvation = -17777.836062 eV Core-core repulsion = 14905.672864 eV Total energy + Delta-G solvation = -2872.163199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.88904 -37.85553 -35.58616 -34.66257 -32.21381 -30.63598 -29.23805 -28.48670 -27.25573 -25.21603 -23.08587 -22.37091 -20.95302 -19.75226 -17.59571 -16.77513 -15.81748 -15.65085 -15.37788 -14.82823 -14.67352 -14.39880 -13.83138 -13.62885 -13.41227 -13.02581 -12.80720 -12.48354 -12.40077 -11.95620 -11.78840 -11.37363 -11.23709 -11.05773 -10.99236 -10.96074 -10.78765 -10.45576 -10.32283 -10.12365 -9.12266 -8.67885 -8.63808 -8.30879 -7.81634 -6.11368 -4.32121 1.51219 1.71110 3.22823 3.29521 3.31606 3.79418 3.96663 4.33826 4.68470 4.79399 5.06743 5.10290 5.16313 5.31825 5.32328 5.48627 5.48982 5.59397 5.69387 5.69773 5.83575 5.86366 5.93250 5.96222 6.11726 6.12510 6.22623 6.28615 6.51601 6.60264 6.69554 6.76127 7.04035 7.56991 7.70432 7.94798 8.04502 8.70815 9.30170 9.46381 10.93315 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.048600 B = 0.003981 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.994110 B = 7031.942350 C = 7332.697175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.042 4.042 5 C -0.168 4.168 6 C -0.079 4.079 7 C -0.219 4.219 8 C 0.146 3.854 9 O -0.306 6.306 10 C 0.034 3.966 11 C 0.236 3.764 12 H 0.066 0.934 13 O -0.558 6.558 14 C -0.577 4.577 15 H 0.059 0.941 16 C 0.081 3.919 17 N -0.854 5.854 18 Si 0.896 3.104 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.159 4.159 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.345 0.655 36 H 0.263 0.737 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.439 15.371 -2.345 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.042 4.042 5 C -0.186 4.186 6 C -0.097 4.097 7 C -0.238 4.238 8 C 0.099 3.901 9 O -0.218 6.218 10 C -0.041 4.041 11 C 0.178 3.822 12 H 0.084 0.916 13 O -0.360 6.360 14 C -0.615 4.615 15 H 0.077 0.923 16 C -0.126 4.126 17 N -0.489 5.489 18 Si 0.723 3.277 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.178 4.178 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.189 0.811 36 H 0.073 0.927 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.497 14.722 -3.107 18.346 hybrid contribution 0.422 -0.240 1.729 1.796 sum -10.075 14.483 -1.378 17.696 Atomic orbital electron populations 1.21845 0.94370 1.02094 1.01673 1.20122 0.95884 0.95977 0.95547 1.21844 1.01401 0.95067 1.01670 1.19553 0.95830 0.94198 0.94638 1.20715 1.04226 1.01783 0.91871 1.20865 0.96064 0.94458 0.98309 1.21342 1.05069 1.00475 0.96882 1.19237 0.90127 0.87298 0.93474 1.86249 1.62260 1.37874 1.35460 1.24162 0.98689 0.96783 0.84455 1.19454 0.81977 0.87026 0.93768 0.91623 1.86609 1.36213 1.67524 1.45632 1.21424 1.35752 1.11659 0.92683 0.92289 1.25024 0.94880 0.96444 0.96260 1.70094 1.32882 1.21949 1.23951 0.86554 0.77997 0.79908 0.83232 1.20361 1.20934 1.19710 1.20331 1.02628 0.97388 0.97458 0.92480 0.92543 0.92447 0.90364 0.92488 0.92435 0.92536 0.86593 0.86325 0.85488 0.92431 0.93051 0.81128 0.92688 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.01 37.16 0.33 -0.94 16 2 C -0.06 -0.59 3.09 -91.77 -0.28 -0.87 16 3 C -0.14 -1.27 9.01 37.16 0.33 -0.94 16 4 C -0.04 -0.55 4.78 -104.65 -0.50 -1.05 16 5 C -0.17 -2.11 8.71 -39.56 -0.34 -2.45 16 6 C -0.08 -1.06 10.04 -39.60 -0.40 -1.46 16 7 C -0.22 -3.51 9.04 -39.43 -0.36 -3.86 16 8 C 0.15 2.62 6.69 -39.22 -0.26 2.36 16 9 O -0.31 -6.47 10.10 -24.25 -0.24 -6.71 16 10 C 0.03 0.72 4.31 37.16 0.16 0.88 16 11 C 0.24 6.09 3.11 -27.88 -0.09 6.01 16 12 H 0.07 1.88 8.14 -51.93 -0.42 1.45 16 13 O -0.56 -14.79 12.70 -40.08 -0.51 -15.29 16 14 C -0.58 -15.64 8.76 -34.44 -0.30 -15.94 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 17 N -0.85 -25.10 12.84 55.43 0.71 -24.39 16 18 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 C -0.16 -2.52 9.61 -39.43 -0.38 -2.90 16 23 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 27 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.12 1.19 7.10 -52.49 -0.37 0.81 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.13 1.99 6.30 -52.49 -0.33 1.66 16 33 H 0.06 1.17 7.65 -51.93 -0.40 0.77 16 34 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 35 H 0.35 8.00 9.04 45.56 0.41 8.41 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.13 1.92 7.94 -52.49 -0.42 1.51 16 LS Contribution 311.21 15.07 4.69 4.69 Total: -1.00 -30.53 311.21 -7.31 -37.84 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -4.76 Total: 7.15 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -2.18 Total: -19.03 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.71 Total: -24.39 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.75 Total: -22.01 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.53 -7.31 -37.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.284 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds