Wall clock time and date at job start Mon Mar 30 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46626 * 2 1 4 4 C 1.50690 * 109.47292 * 120.00096 * 2 1 3 5 5 C 1.38291 * 119.97181 * 299.97703 * 4 2 1 6 6 C 1.38251 * 120.11437 * 180.02562 * 5 4 2 7 7 C 1.38171 * 120.05110 * 359.68845 * 6 5 4 8 8 C 1.38711 * 119.94390 * 0.61073 * 7 6 5 9 9 O 1.35893 * 120.05609 * 179.68186 * 8 7 6 10 10 C 1.42904 * 117.00281 * 359.72888 * 9 8 7 11 11 C 1.52997 * 109.47396 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47153 * 304.99576 * 11 10 9 13 13 O 1.42898 * 109.47319 * 64.99884 * 11 10 9 14 14 C 1.50699 * 109.47078 * 184.99783 * 11 10 9 15 15 H 1.07999 * 120.00019 * 359.97438 * 14 11 10 16 16 C 1.37877 * 120.00129 * 180.02562 * 14 11 10 17 17 N 1.31519 * 119.99723 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99900 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47147 * 90.00197 * 18 16 14 20 20 H 1.48499 * 109.46797 * 209.99607 * 18 16 14 21 21 H 1.48500 * 109.47032 * 329.99738 * 18 16 14 22 22 C 1.38119 * 119.97635 * 119.99823 * 4 2 1 23 23 H 1.09002 * 109.47031 * 299.99843 * 1 2 3 24 24 H 1.09002 * 109.46977 * 60.00196 * 1 2 3 25 25 H 1.09002 * 109.46771 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47031 * 240.00157 * 2 1 3 27 27 H 1.09002 * 109.47287 * 60.00314 * 3 2 1 28 28 H 1.09000 * 109.46847 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47282 * 299.99617 * 3 2 1 30 30 H 1.08000 * 119.94796 * 0.02562 * 5 4 2 31 31 H 1.07994 * 119.97546 * 179.97438 * 6 5 4 32 32 H 1.07999 * 120.02827 * 180.29793 * 7 6 5 33 33 H 1.09001 * 109.46993 * 59.99438 * 10 9 8 34 34 H 1.09004 * 109.46505 * 300.00213 * 10 9 8 35 35 H 0.96698 * 113.99898 * 59.99520 * 13 11 10 36 36 H 0.97003 * 119.99231 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.02789 * 0.02757 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6984 -0.2371 2.4861 6 6 2.1581 -0.8863 3.6169 7 6 2.9474 -2.0137 3.4947 8 6 3.2890 -2.4868 2.2363 9 8 4.0706 -3.5917 2.1136 10 6 4.5101 -4.2131 3.3230 11 6 5.3725 -5.4312 2.9864 12 1 4.8154 -6.1009 2.3313 13 8 6.5653 -5.0026 2.3264 14 6 5.7343 -6.1570 4.2565 15 1 5.3845 -5.7863 5.2087 16 6 6.5128 -7.2937 4.2032 17 7 6.9392 -7.7448 3.0437 18 14 6.9618 -8.1930 5.7777 19 1 5.9273 -9.2157 6.0759 20 1 8.2798 -8.8564 5.6101 21 1 7.0354 -7.2218 6.8986 22 6 2.8264 -1.8333 1.1030 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.0773 0.6410 2.5837 31 1 1.8962 -0.5145 4.5964 32 1 3.3023 -2.5233 4.3783 33 1 3.6441 -4.5299 3.9042 34 1 5.0973 -3.5020 3.9042 35 1 7.1118 -4.4026 2.8521 36 1 7.4872 -8.5444 3.0062 37 1 3.0877 -2.2021 0.1221 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:33 Heat of formation + Delta-G solvation = -105.486717 kcal Electronic energy + Delta-G solvation = -17778.675782 eV Core-core repulsion = 14905.672864 eV Total energy + Delta-G solvation = -2873.002919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.16245 -39.20689 -37.44752 -35.73421 -34.34066 -31.94196 -30.67817 -29.95198 -27.93648 -27.10706 -24.32788 -23.53589 -22.66955 -20.95194 -19.27563 -18.32023 -17.23737 -17.07419 -16.87237 -16.68551 -16.05777 -15.80864 -15.04423 -14.91898 -14.52425 -14.43211 -14.25934 -13.94399 -13.27915 -13.20659 -13.00272 -12.86420 -12.81243 -12.77958 -12.32032 -12.13948 -12.04609 -11.68649 -11.65761 -11.49529 -11.13098 -10.77940 -10.35242 -9.75820 -9.08755 -8.21539 -6.50342 0.38321 0.53060 1.40953 1.42141 1.53408 2.23887 2.49442 2.82250 3.05612 3.74523 3.88826 4.03005 4.06402 4.16606 4.21110 4.34224 4.35122 4.39599 4.50250 4.60324 4.64327 4.76821 4.86330 5.03011 5.04138 5.07343 5.23105 5.32550 5.43458 5.43552 5.48109 5.54248 5.59426 5.69978 5.87860 5.96738 6.52914 6.63922 7.24373 7.42713 8.84601 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.048600 B = 0.003981 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.994110 B = 7031.942350 C = 7332.697175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.038 4.038 5 C -0.157 4.157 6 C -0.076 4.076 7 C -0.230 4.230 8 C 0.108 3.892 9 O -0.335 6.335 10 C 0.055 3.945 11 C 0.232 3.768 12 H 0.024 0.976 13 O -0.577 6.577 14 C -0.589 4.589 15 H 0.071 0.929 16 C 0.025 3.975 17 N -0.899 5.899 18 Si 0.973 3.027 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.177 4.177 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.126 0.874 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.358 0.642 36 H 0.265 0.735 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.828 17.539 -0.876 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.197 4.197 4 C -0.038 4.038 5 C -0.175 4.175 6 C -0.094 4.094 7 C -0.249 4.249 8 C 0.063 3.937 9 O -0.249 6.249 10 C -0.020 4.020 11 C 0.174 3.826 12 H 0.042 0.958 13 O -0.381 6.381 14 C -0.627 4.627 15 H 0.089 0.911 16 C -0.178 4.178 17 N -0.535 5.535 18 Si 0.796 3.204 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.195 4.195 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.144 0.856 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.203 0.797 36 H 0.074 0.926 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.903 16.920 -1.632 20.751 hybrid contribution 0.766 -0.783 1.180 1.610 sum -11.137 16.137 -0.453 19.612 Atomic orbital electron populations 1.21834 0.92900 1.01849 1.03103 1.20211 0.97000 0.96559 0.93922 1.21833 1.00724 0.94021 1.03102 1.19930 0.94379 0.93011 0.96491 1.21145 1.03205 1.02112 0.91063 1.21255 0.94676 0.93188 1.00260 1.21459 1.05948 1.01639 0.95876 1.19560 0.91605 0.87322 0.95248 1.86158 1.63850 1.39724 1.35199 1.23661 0.98275 0.95369 0.84718 1.19301 0.82194 0.88570 0.92525 0.95765 1.86539 1.36983 1.68113 1.46450 1.21802 1.35520 1.11968 0.93390 0.91114 1.26002 0.94683 0.97326 0.99803 1.70247 1.33961 1.22685 1.26633 0.85363 0.77584 0.78601 0.78860 1.19673 1.20782 1.18305 1.20512 1.03714 0.98587 0.96732 0.91486 0.90727 0.93546 0.90822 0.91489 0.93531 0.90724 0.83217 0.83124 0.85599 0.91771 0.91752 0.79679 0.92635 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.01 71.98 0.65 -1.44 16 2 C -0.06 -1.08 3.09 -11.54 -0.04 -1.12 16 3 C -0.14 -2.09 9.01 71.98 0.65 -1.44 16 4 C -0.04 -0.94 4.78 -19.88 -0.10 -1.04 16 5 C -0.16 -3.45 8.71 22.29 0.19 -3.26 16 6 C -0.08 -1.84 10.04 22.26 0.22 -1.61 16 7 C -0.23 -7.22 9.04 22.37 0.20 -7.02 16 8 C 0.11 3.97 6.69 22.51 0.15 4.12 16 9 O -0.34 -14.83 10.10 -87.71 -0.89 -15.72 16 10 C 0.05 2.40 4.31 71.98 0.31 2.71 16 11 C 0.23 12.47 3.11 29.85 0.09 12.57 16 12 H 0.02 1.49 8.14 -2.39 -0.02 1.47 16 13 O -0.58 -31.79 12.70 -144.35 -1.83 -33.63 16 14 C -0.59 -32.33 8.76 25.60 0.22 -32.11 16 15 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 16 C 0.02 1.39 5.40 84.65 0.46 1.85 16 17 N -0.90 -54.25 12.84 21.45 0.28 -53.97 16 18 Si 0.97 42.67 29.54 68.60 2.03 44.69 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 22 C -0.18 -5.69 9.61 22.37 0.21 -5.47 16 23 H 0.07 0.87 7.39 -2.39 -0.02 0.86 16 24 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 1.43 7.87 -2.39 -0.02 1.41 16 27 H 0.07 0.87 7.38 -2.39 -0.02 0.85 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 30 H 0.15 2.31 7.10 -2.91 -0.02 2.29 16 31 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.13 3.87 6.30 -2.91 -0.02 3.85 16 33 H 0.06 2.66 7.65 -2.39 -0.02 2.64 16 34 H 0.06 2.60 7.67 -2.39 -0.02 2.58 16 35 H 0.36 17.12 9.04 -74.06 -0.67 16.45 16 36 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.12 3.85 7.94 -2.91 -0.02 3.83 16 Total: -1.00 -67.54 311.21 3.20 -64.33 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.39 Total: 27.54 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 3.24 Total: -33.26 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.28 Total: -53.97 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -2.72 Total: -49.34 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -67.54 3.20 -64.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.155 kcal (2) G-P(sol) polarization free energy of solvation -67.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds