Wall clock time and date at job start Mon Mar 30 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 C 1.38263 * 119.94672 * 299.72523 * 4 2 1 6 6 C 1.38143 * 120.05579 * 179.72304 * 5 4 2 7 7 C 1.38733 * 119.94234 * 0.55395 * 6 5 4 8 8 O 1.35895 * 120.05657 * 179.74426 * 7 6 5 9 9 C 1.42905 * 117.00022 * 359.97438 * 8 7 6 10 10 C 1.53003 * 109.47168 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.46953 * 304.99751 * 10 9 8 12 12 O 1.42895 * 109.47268 * 64.99870 * 10 9 8 13 13 C 1.50696 * 109.46830 * 184.99920 * 10 9 8 14 14 H 1.07998 * 120.00458 * 0.02562 * 13 10 9 15 15 C 1.37886 * 119.99947 * 179.97438 * 13 10 9 16 16 N 1.31508 * 119.99938 * 180.02562 * 15 13 10 17 17 Si 1.86797 * 119.99744 * 0.02562 * 15 13 10 18 18 H 1.48501 * 109.47285 * 89.99835 * 17 15 13 19 19 H 1.48504 * 109.47156 * 209.99868 * 17 15 13 20 20 H 1.48503 * 109.47297 * 329.99618 * 17 15 13 21 21 C 1.38737 * 119.89030 * 359.72143 * 7 6 5 22 22 C 1.38141 * 119.94079 * 0.02562 * 21 7 6 23 23 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 24 24 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 25 25 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47040 * 239.99530 * 2 1 3 27 27 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 29 29 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 30 30 H 1.08001 * 119.97275 * 0.02562 * 5 4 2 31 31 H 1.07992 * 120.02923 * 180.27343 * 6 5 4 32 32 H 1.08997 * 109.47056 * 300.00350 * 9 8 7 33 33 H 1.08999 * 109.46928 * 59.99960 * 9 8 7 34 34 H 0.96704 * 113.99750 * 59.99838 * 12 10 9 35 35 H 0.96999 * 119.99874 * 180.02562 * 16 15 13 36 36 H 1.07994 * 120.02884 * 179.97438 * 21 7 6 37 37 H 1.07998 * 119.97174 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 6 1.7022 -0.2336 2.4858 6 6 2.1566 -0.8863 3.6153 7 6 2.9543 -2.0143 3.4895 8 8 3.4069 -2.6551 4.5991 9 6 3.0229 -2.1120 5.8639 10 6 3.6220 -2.9613 6.9867 11 1 3.3261 -4.0018 6.8526 12 8 5.0471 -2.8629 6.9499 13 6 3.1183 -2.4632 8.3167 14 1 2.4385 -1.6250 8.3572 15 6 3.5245 -3.0782 9.4821 16 7 3.0844 -2.6438 10.6427 17 14 4.6997 -4.5285 9.4121 18 1 6.0989 -4.0354 9.4775 19 1 4.4393 -5.4326 10.5611 20 1 4.4952 -5.2705 8.1421 21 6 3.2888 -2.4874 2.2289 22 6 2.8275 -1.8342 1.1025 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.0845 0.6470 2.5832 31 1 1.8949 -0.5161 4.5955 32 1 3.3897 -1.0889 5.9464 33 1 1.9361 -2.1160 5.9462 34 1 5.3822 -1.9629 7.0630 35 1 3.3705 -3.0762 11.4625 36 1 3.9099 -3.3651 2.1283 37 1 3.0879 -2.2018 0.1210 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:38 Heat of formation + Delta-G solvation = -83.549401 kcal Electronic energy + Delta-G solvation = -17796.669954 eV Core-core repulsion = 14924.618308 eV Total energy + Delta-G solvation = -2872.051645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.96970 -38.01661 -35.99727 -34.59081 -32.38892 -30.92249 -29.70667 -28.39086 -27.28495 -25.37868 -23.22616 -22.33997 -20.60888 -20.00857 -18.16622 -17.14796 -15.95954 -15.59190 -15.34849 -14.91715 -14.62504 -14.28944 -13.94503 -13.73577 -13.35183 -13.24246 -13.10873 -12.79018 -12.44728 -12.26063 -11.92784 -11.67513 -11.30857 -11.24152 -10.93835 -10.84752 -10.77338 -10.53263 -10.30299 -9.82671 -9.29667 -8.86297 -8.76231 -8.68873 -7.80450 -6.24945 -4.39997 1.48498 1.59818 3.40775 3.44059 3.58033 3.72000 3.89857 4.42127 4.62575 4.71615 5.03685 5.05107 5.07609 5.09976 5.34073 5.44925 5.45950 5.54576 5.64861 5.67488 5.69296 5.78325 5.80994 5.83334 5.98249 6.08755 6.08934 6.16436 6.26351 6.46489 6.59887 6.73077 6.95385 7.16441 7.38118 7.86844 8.13138 8.66916 8.88638 9.36363 10.84619 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.048376 B = 0.004116 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.657432 B = 6801.481802 C = 7104.653132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C -0.144 4.144 4 C -0.130 4.130 5 C -0.074 4.074 6 C -0.210 4.210 7 C 0.138 3.862 8 O -0.310 6.310 9 C 0.043 3.957 10 C 0.199 3.801 11 H 0.071 0.929 12 O -0.579 6.579 13 C -0.568 4.568 14 H 0.076 0.924 15 C 0.086 3.914 16 N -0.887 5.887 17 Si 0.915 3.085 18 H -0.276 1.276 19 H -0.303 1.303 20 H -0.266 1.266 21 C -0.159 4.159 22 C -0.080 4.080 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.362 0.638 35 H 0.268 0.732 36 H 0.127 0.873 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.685 5.378 -19.781 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.202 4.202 4 C -0.131 4.131 5 C -0.092 4.092 6 C -0.229 4.229 7 C 0.092 3.908 8 O -0.223 6.223 9 C -0.032 4.032 10 C 0.141 3.859 11 H 0.089 0.911 12 O -0.385 6.385 13 C -0.605 4.605 14 H 0.095 0.905 15 C -0.119 4.119 16 N -0.523 5.523 17 Si 0.744 3.256 18 H -0.202 1.202 19 H -0.231 1.231 20 H -0.190 1.190 21 C -0.177 4.177 22 C -0.098 4.098 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.208 0.792 35 H 0.078 0.922 36 H 0.145 0.855 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.624 4.543 -19.645 20.333 hybrid contribution 0.353 0.155 0.398 0.554 sum -2.271 4.698 -19.247 19.942 Atomic orbital electron populations 1.21867 0.94718 1.01935 1.01631 1.20001 0.95631 0.95764 0.95366 1.21867 1.01239 0.95413 1.01632 1.19644 1.01455 0.97529 0.94436 1.20705 0.98318 0.98735 0.91411 1.21356 1.03414 0.98152 0.99953 1.19224 0.92541 0.91204 0.87857 1.86200 1.70025 1.52736 1.13307 1.23841 1.00123 0.98635 0.80589 1.19982 0.78570 0.96614 0.90710 0.91137 1.86422 1.23833 1.33038 1.95231 1.21294 1.31170 1.19068 0.88976 0.90543 1.24962 0.95103 0.97008 0.94853 1.69931 1.43300 1.41194 0.97882 0.86219 0.81223 0.81451 0.76725 1.20194 1.23092 1.19047 1.20427 1.04922 1.02684 0.89717 1.20776 0.96681 0.94734 0.97631 0.92519 0.92724 0.92573 0.90844 0.92580 0.92728 0.92514 0.86317 0.85301 0.92451 0.91815 0.79177 0.92200 0.85472 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.01 37.16 0.33 -0.89 16 2 C -0.05 -0.46 3.09 -91.77 -0.28 -0.74 16 3 C -0.14 -1.22 9.00 37.16 0.33 -0.89 16 4 C -0.13 -1.56 4.78 -104.60 -0.50 -2.06 16 5 C -0.07 -0.95 8.70 -39.61 -0.34 -1.30 16 6 C -0.21 -3.22 9.04 -39.43 -0.36 -3.57 16 7 C 0.14 2.35 6.69 -39.21 -0.26 2.09 16 8 O -0.31 -6.12 10.10 -24.26 -0.25 -6.36 16 9 C 0.04 0.86 4.31 37.16 0.16 1.02 16 10 C 0.20 4.73 2.58 -27.88 -0.07 4.66 16 11 H 0.07 1.77 7.20 -51.93 -0.37 1.39 16 12 O -0.58 -13.50 11.00 -40.08 -0.44 -13.94 16 13 C -0.57 -15.49 9.34 -34.44 -0.32 -15.81 16 14 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 15 C 0.09 2.45 5.47 -17.82 -0.10 2.36 16 16 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 17 Si 0.91 23.04 26.18 -169.99 -4.45 18.59 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 20 H -0.27 -6.71 6.54 56.52 0.37 -6.34 16 21 C -0.16 -2.35 9.99 -39.43 -0.39 -2.74 16 22 C -0.08 -0.99 9.66 -39.61 -0.38 -1.38 16 23 H 0.06 0.49 7.40 -51.93 -0.38 0.10 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.49 7.37 -51.93 -0.38 0.10 16 30 H 0.12 1.31 7.09 -52.49 -0.37 0.93 16 31 H 0.13 1.94 6.30 -52.49 -0.33 1.61 16 32 H 0.06 1.09 7.66 -51.93 -0.40 0.69 16 33 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 34 H 0.36 7.30 9.04 45.56 0.41 7.71 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.12 1.19 7.94 -52.49 -0.42 0.78 16 LS Contribution 306.13 15.07 4.61 4.61 Total: -1.00 -30.60 306.13 -6.69 -37.29 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.75 Total: 4.73 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -2.19 Total: -19.25 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 0.77 Total: -25.67 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.69 Total: -20.31 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.45 Total: 18.59 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.60 -6.69 -37.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.261 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds