Wall clock time and date at job start Mon Mar 30 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 C 1.38263 * 119.94672 * 299.72523 * 4 2 1 6 6 C 1.38143 * 120.05579 * 179.72304 * 5 4 2 7 7 C 1.38733 * 119.94234 * 0.55395 * 6 5 4 8 8 O 1.35895 * 120.05657 * 179.74426 * 7 6 5 9 9 C 1.42905 * 117.00022 * 359.97438 * 8 7 6 10 10 C 1.53003 * 109.47168 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.46953 * 304.99751 * 10 9 8 12 12 O 1.42895 * 109.47268 * 64.99870 * 10 9 8 13 13 C 1.50696 * 109.46830 * 184.99920 * 10 9 8 14 14 H 1.07998 * 120.00458 * 0.02562 * 13 10 9 15 15 C 1.37886 * 119.99947 * 179.97438 * 13 10 9 16 16 N 1.31508 * 119.99938 * 180.02562 * 15 13 10 17 17 Si 1.86797 * 119.99744 * 0.02562 * 15 13 10 18 18 H 1.48501 * 109.47285 * 89.99835 * 17 15 13 19 19 H 1.48504 * 109.47156 * 209.99868 * 17 15 13 20 20 H 1.48503 * 109.47297 * 329.99618 * 17 15 13 21 21 C 1.38737 * 119.89030 * 359.72143 * 7 6 5 22 22 C 1.38141 * 119.94079 * 0.02562 * 21 7 6 23 23 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 24 24 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 25 25 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47040 * 239.99530 * 2 1 3 27 27 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 29 29 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 30 30 H 1.08001 * 119.97275 * 0.02562 * 5 4 2 31 31 H 1.07992 * 120.02923 * 180.27343 * 6 5 4 32 32 H 1.08997 * 109.47056 * 300.00350 * 9 8 7 33 33 H 1.08999 * 109.46928 * 59.99960 * 9 8 7 34 34 H 0.96704 * 113.99750 * 59.99838 * 12 10 9 35 35 H 0.96999 * 119.99874 * 180.02562 * 16 15 13 36 36 H 1.07994 * 120.02884 * 179.97438 * 21 7 6 37 37 H 1.07998 * 119.97174 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 6 1.7022 -0.2336 2.4858 6 6 2.1566 -0.8863 3.6153 7 6 2.9543 -2.0143 3.4895 8 8 3.4069 -2.6551 4.5991 9 6 3.0229 -2.1120 5.8639 10 6 3.6220 -2.9613 6.9867 11 1 3.3261 -4.0018 6.8526 12 8 5.0471 -2.8629 6.9499 13 6 3.1183 -2.4632 8.3167 14 1 2.4385 -1.6250 8.3572 15 6 3.5245 -3.0782 9.4821 16 7 3.0844 -2.6438 10.6427 17 14 4.6997 -4.5285 9.4121 18 1 6.0989 -4.0354 9.4775 19 1 4.4393 -5.4326 10.5611 20 1 4.4952 -5.2705 8.1421 21 6 3.2888 -2.4874 2.2289 22 6 2.8275 -1.8342 1.1025 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.0845 0.6470 2.5832 31 1 1.8949 -0.5161 4.5955 32 1 3.3897 -1.0889 5.9464 33 1 1.9361 -2.1160 5.9462 34 1 5.3822 -1.9629 7.0630 35 1 3.3705 -3.0762 11.4625 36 1 3.9099 -3.3651 2.1283 37 1 3.0879 -2.2018 0.1210 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:38 Heat of formation + Delta-G solvation = -103.188118 kcal Electronic energy + Delta-G solvation = -17797.521552 eV Core-core repulsion = 14924.618308 eV Total energy + Delta-G solvation = -2872.903244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17146 -39.28793 -37.71502 -35.56887 -34.54427 -32.04233 -31.32040 -29.66416 -27.92220 -27.20653 -24.27881 -23.65692 -22.27827 -20.91039 -19.84030 -18.74142 -17.36013 -17.22114 -16.79182 -16.40850 -16.10345 -15.36623 -15.21974 -15.10221 -14.85289 -14.29571 -14.22764 -14.08537 -13.73346 -13.40826 -13.26255 -13.02190 -12.84151 -12.81918 -12.14769 -12.07994 -11.82561 -11.64837 -11.59097 -11.48296 -11.21801 -10.94313 -10.61989 -9.93715 -8.97638 -8.44508 -6.62145 0.40877 0.49066 1.39024 1.41144 1.56833 2.31188 2.33410 2.81456 2.89545 3.80107 3.83694 3.86233 3.98407 4.07024 4.17021 4.28291 4.38976 4.43738 4.47486 4.59555 4.63959 4.78298 4.85860 4.99570 5.04780 5.11817 5.15728 5.25152 5.31251 5.37981 5.42991 5.44438 5.49340 5.75416 5.91726 5.96581 6.49098 6.52208 7.05462 7.20051 8.68772 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.048376 B = 0.004116 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.657432 B = 6801.481802 C = 7104.653132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C -0.144 4.144 4 C -0.121 4.121 5 C -0.077 4.077 6 C -0.221 4.221 7 C 0.101 3.899 8 O -0.330 6.330 9 C 0.059 3.941 10 C 0.204 3.796 11 H 0.058 0.942 12 O -0.584 6.584 13 C -0.568 4.568 14 H 0.051 0.949 15 C 0.039 3.961 16 N -0.928 5.928 17 Si 0.972 3.028 18 H -0.272 1.272 19 H -0.297 1.297 20 H -0.267 1.267 21 C -0.166 4.166 22 C -0.078 4.078 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.138 0.862 31 H 0.123 0.877 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.376 0.624 35 H 0.273 0.727 36 H 0.131 0.869 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 5.678 -22.416 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.066 4.066 3 C -0.201 4.201 4 C -0.121 4.121 5 C -0.095 4.095 6 C -0.240 4.240 7 C 0.056 3.944 8 O -0.244 6.244 9 C -0.016 4.016 10 C 0.146 3.854 11 H 0.076 0.924 12 O -0.392 6.392 13 C -0.606 4.606 14 H 0.069 0.931 15 C -0.163 4.163 16 N -0.566 5.566 17 Si 0.799 3.201 18 H -0.197 1.197 19 H -0.224 1.224 20 H -0.192 1.192 21 C -0.185 4.185 22 C -0.095 4.095 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.156 0.844 31 H 0.141 0.859 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.224 0.776 35 H 0.082 0.918 36 H 0.149 0.851 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.459 4.859 -22.298 22.954 hybrid contribution 0.243 0.160 1.067 1.106 sum -2.215 5.019 -21.231 21.929 Atomic orbital electron populations 1.21867 0.94014 1.01849 1.02389 1.20088 0.96140 0.96069 0.94352 1.21865 1.00946 0.94899 1.02395 1.20070 0.99883 0.96945 0.95210 1.20959 0.98200 0.99125 0.91179 1.21426 1.03712 0.98153 1.00667 1.19527 0.94725 0.92610 0.87566 1.86107 1.71046 1.53665 1.13560 1.23399 0.99688 0.98020 0.80509 1.19718 0.78906 0.96362 0.90439 0.92395 1.86350 1.23214 1.34376 1.95227 1.21537 1.30245 1.17999 0.90777 0.93080 1.25698 0.96611 0.99320 0.94625 1.70021 1.45063 1.42832 0.98655 0.85328 0.79407 0.78751 0.76648 1.19716 1.22414 1.19161 1.20657 1.05127 1.03124 0.89589 1.21151 0.95819 0.94365 0.98193 0.92890 0.90940 0.93093 0.89311 0.93056 0.90956 0.92866 0.84418 0.85903 0.91662 0.91862 0.77577 0.91830 0.85062 0.82855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.01 71.98 0.65 -1.34 16 2 C -0.05 -0.73 3.09 -11.54 -0.04 -0.76 16 3 C -0.14 -1.97 9.00 71.98 0.65 -1.33 16 4 C -0.12 -2.57 4.78 -19.85 -0.09 -2.67 16 5 C -0.08 -1.86 8.70 22.25 0.19 -1.67 16 6 C -0.22 -6.69 9.04 22.37 0.20 -6.49 16 7 C 0.10 3.41 6.69 22.51 0.15 3.56 16 8 O -0.33 -13.12 10.10 -87.73 -0.89 -14.00 16 9 C 0.06 2.40 4.31 71.98 0.31 2.71 16 10 C 0.20 9.73 2.58 29.85 0.08 9.81 16 11 H 0.06 2.92 7.20 -2.39 -0.02 2.90 16 12 O -0.58 -26.81 11.00 -144.35 -1.59 -28.40 16 13 C -0.57 -31.50 9.34 25.60 0.24 -31.26 16 14 H 0.05 3.03 7.99 -2.91 -0.02 3.01 16 15 C 0.04 2.24 5.47 84.66 0.46 2.70 16 16 N -0.93 -56.12 13.96 21.45 0.30 -55.82 16 17 Si 0.97 47.52 26.18 68.60 1.80 49.32 16 18 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 19 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 20 H -0.27 -13.01 6.54 99.48 0.65 -12.36 16 21 C -0.17 -4.73 9.99 22.37 0.22 -4.50 16 22 C -0.08 -1.72 9.66 22.25 0.22 -1.51 16 23 H 0.05 0.77 7.40 -2.38 -0.02 0.75 16 24 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.09 1.11 7.87 -2.39 -0.02 1.09 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.77 7.37 -2.39 -0.02 0.75 16 30 H 0.14 2.76 7.09 -2.91 -0.02 2.73 16 31 H 0.12 3.76 6.30 -2.91 -0.02 3.74 16 32 H 0.07 2.50 7.66 -2.39 -0.02 2.48 16 33 H 0.06 2.53 7.66 -2.39 -0.02 2.51 16 34 H 0.38 14.88 9.04 -74.05 -0.67 14.21 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.15 2.41 7.94 -2.91 -0.02 2.39 16 Total: -1.00 -65.25 306.13 3.19 -62.06 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.33 Total: 19.60 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 3.24 Total: -32.75 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.30 Total: -55.82 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -2.47 Total: -42.40 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.80 Total: 49.32 kcal Total: -65.25 3.19 -62.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.130 kcal (2) G-P(sol) polarization free energy of solvation -65.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds