Wall clock time and date at job start Mon Mar 30 2020 06:01:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52997 * 109.47206 * 2 1
4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3
5 5 C 1.38263 * 119.94672 * 299.72523 * 4 2 1
6 6 C 1.38143 * 120.05579 * 179.72304 * 5 4 2
7 7 C 1.38733 * 119.94234 * 0.55395 * 6 5 4
8 8 O 1.35895 * 120.05657 * 179.74426 * 7 6 5
9 9 C 1.42905 * 117.00022 * 359.97438 * 8 7 6
10 10 C 1.53003 * 109.47168 * 179.97438 * 9 8 7
11 11 H 1.09002 * 109.46953 * 304.99751 * 10 9 8
12 12 O 1.42895 * 109.47268 * 64.99870 * 10 9 8
13 13 C 1.50696 * 109.46830 * 184.99920 * 10 9 8
14 14 H 1.07998 * 120.00458 * 0.02562 * 13 10 9
15 15 C 1.37886 * 119.99947 * 179.97438 * 13 10 9
16 16 N 1.31508 * 119.99938 * 180.02562 * 15 13 10
17 17 Si 1.86797 * 119.99744 * 0.02562 * 15 13 10
18 18 H 1.48501 * 109.47285 * 89.99835 * 17 15 13
19 19 H 1.48504 * 109.47156 * 209.99868 * 17 15 13
20 20 H 1.48503 * 109.47297 * 329.99618 * 17 15 13
21 21 C 1.38737 * 119.89030 * 359.72143 * 7 6 5
22 22 C 1.38141 * 119.94079 * 0.02562 * 21 7 6
23 23 H 1.09005 * 109.47120 * 300.00628 * 1 2 3
24 24 H 1.09002 * 109.46792 * 60.00402 * 1 2 3
25 25 H 1.09002 * 109.47539 * 180.02562 * 1 2 3
26 26 H 1.08995 * 109.47040 * 239.99530 * 2 1 3
27 27 H 1.09001 * 109.47000 * 180.02562 * 3 2 1
28 28 H 1.09002 * 109.46917 * 299.99521 * 3 2 1
29 29 H 1.08995 * 109.47505 * 59.99814 * 3 2 1
30 30 H 1.08001 * 119.97275 * 0.02562 * 5 4 2
31 31 H 1.07992 * 120.02923 * 180.27343 * 6 5 4
32 32 H 1.08997 * 109.47056 * 300.00350 * 9 8 7
33 33 H 1.08999 * 109.46928 * 59.99960 * 9 8 7
34 34 H 0.96704 * 113.99750 * 59.99838 * 12 10 9
35 35 H 0.96999 * 119.99874 * 180.02562 * 16 15 13
36 36 H 1.07994 * 120.02884 * 179.97438 * 21 7 6
37 37 H 1.07998 * 119.97174 * 179.97438 * 22 21 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0322 -0.7103 1.2306
5 6 1.7022 -0.2336 2.4858
6 6 2.1566 -0.8863 3.6153
7 6 2.9543 -2.0143 3.4895
8 8 3.4069 -2.6551 4.5991
9 6 3.0229 -2.1120 5.8639
10 6 3.6220 -2.9613 6.9867
11 1 3.3261 -4.0018 6.8526
12 8 5.0471 -2.8629 6.9499
13 6 3.1183 -2.4632 8.3167
14 1 2.4385 -1.6250 8.3572
15 6 3.5245 -3.0782 9.4821
16 7 3.0844 -2.6438 10.6427
17 14 4.6997 -4.5285 9.4121
18 1 6.0989 -4.0354 9.4775
19 1 4.4393 -5.4326 10.5611
20 1 4.4952 -5.2705 8.1421
21 6 3.2888 -2.4874 2.2289
22 6 2.8275 -1.8342 1.1025
23 1 -0.3633 0.5140 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 -1.0277 0.0005
26 1 1.8933 -0.5139 -0.8899
27 1 3.1300 1.4424 -0.0005
28 1 1.6767 1.9562 -0.8900
29 1 1.6767 1.9563 0.8899
30 1 1.0845 0.6470 2.5832
31 1 1.8949 -0.5161 4.5955
32 1 3.3897 -1.0889 5.9464
33 1 1.9361 -2.1160 5.9462
34 1 5.3822 -1.9629 7.0630
35 1 3.3705 -3.0762 11.4625
36 1 3.9099 -3.3651 2.1283
37 1 3.0879 -2.2018 0.1210
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000041232619.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:01:38
Heat of formation + Delta-G solvation = -103.188118 kcal
Electronic energy + Delta-G solvation = -17797.521552 eV
Core-core repulsion = 14924.618308 eV
Total energy + Delta-G solvation = -2872.903244 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 250.136 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.17146 -39.28793 -37.71502 -35.56887 -34.54427 -32.04233 -31.32040 -29.66416
-27.92220 -27.20653 -24.27881 -23.65692 -22.27827 -20.91039 -19.84030 -18.74142
-17.36013 -17.22114 -16.79182 -16.40850 -16.10345 -15.36623 -15.21974 -15.10221
-14.85289 -14.29571 -14.22764 -14.08537 -13.73346 -13.40826 -13.26255 -13.02190
-12.84151 -12.81918 -12.14769 -12.07994 -11.82561 -11.64837 -11.59097 -11.48296
-11.21801 -10.94313 -10.61989 -9.93715 -8.97638 -8.44508 -6.62145 0.40877
0.49066 1.39024 1.41144 1.56833 2.31188 2.33410 2.81456 2.89545
3.80107 3.83694 3.86233 3.98407 4.07024 4.17021 4.28291 4.38976
4.43738 4.47486 4.59555 4.63959 4.78298 4.85860 4.99570 5.04780
5.11817 5.15728 5.25152 5.31251 5.37981 5.42991 5.44438 5.49340
5.75416 5.91726 5.96581 6.49098 6.52208 7.05462 7.20051 8.68772
Molecular weight = 250.14amu
Principal moments of inertia in cm(-1)
A = 0.048376 B = 0.004116 C = 0.003940
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 578.657432 B = 6801.481802 C = 7104.653132
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.048 4.048
3 C -0.144 4.144
4 C -0.121 4.121
5 C -0.077 4.077
6 C -0.221 4.221
7 C 0.101 3.899
8 O -0.330 6.330
9 C 0.059 3.941
10 C 0.204 3.796
11 H 0.058 0.942
12 O -0.584 6.584
13 C -0.568 4.568
14 H 0.051 0.949
15 C 0.039 3.961
16 N -0.928 5.928
17 Si 0.972 3.028
18 H -0.272 1.272
19 H -0.297 1.297
20 H -0.267 1.267
21 C -0.166 4.166
22 C -0.078 4.078
23 H 0.052 0.948
24 H 0.072 0.928
25 H 0.050 0.950
26 H 0.089 0.911
27 H 0.050 0.950
28 H 0.071 0.929
29 H 0.052 0.948
30 H 0.138 0.862
31 H 0.123 0.877
32 H 0.065 0.935
33 H 0.063 0.937
34 H 0.376 0.624
35 H 0.273 0.727
36 H 0.131 0.869
37 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.520 5.678 -22.416 23.261
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.066 4.066
3 C -0.201 4.201
4 C -0.121 4.121
5 C -0.095 4.095
6 C -0.240 4.240
7 C 0.056 3.944
8 O -0.244 6.244
9 C -0.016 4.016
10 C 0.146 3.854
11 H 0.076 0.924
12 O -0.392 6.392
13 C -0.606 4.606
14 H 0.069 0.931
15 C -0.163 4.163
16 N -0.566 5.566
17 Si 0.799 3.201
18 H -0.197 1.197
19 H -0.224 1.224
20 H -0.192 1.192
21 C -0.185 4.185
22 C -0.095 4.095
23 H 0.071 0.929
24 H 0.091 0.909
25 H 0.069 0.931
26 H 0.107 0.893
27 H 0.069 0.931
28 H 0.090 0.910
29 H 0.071 0.929
30 H 0.156 0.844
31 H 0.141 0.859
32 H 0.083 0.917
33 H 0.081 0.919
34 H 0.224 0.776
35 H 0.082 0.918
36 H 0.149 0.851
37 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges -2.459 4.859 -22.298 22.954
hybrid contribution 0.243 0.160 1.067 1.106
sum -2.215 5.019 -21.231 21.929
Atomic orbital electron populations
1.21867 0.94014 1.01849 1.02389 1.20088 0.96140 0.96069 0.94352
1.21865 1.00946 0.94899 1.02395 1.20070 0.99883 0.96945 0.95210
1.20959 0.98200 0.99125 0.91179 1.21426 1.03712 0.98153 1.00667
1.19527 0.94725 0.92610 0.87566 1.86107 1.71046 1.53665 1.13560
1.23399 0.99688 0.98020 0.80509 1.19718 0.78906 0.96362 0.90439
0.92395 1.86350 1.23214 1.34376 1.95227 1.21537 1.30245 1.17999
0.90777 0.93080 1.25698 0.96611 0.99320 0.94625 1.70021 1.45063
1.42832 0.98655 0.85328 0.79407 0.78751 0.76648 1.19716 1.22414
1.19161 1.20657 1.05127 1.03124 0.89589 1.21151 0.95819 0.94365
0.98193 0.92890 0.90940 0.93093 0.89311 0.93056 0.90956 0.92866
0.84418 0.85903 0.91662 0.91862 0.77577 0.91830 0.85062 0.82855
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.99 9.01 71.98 0.65 -1.34 16
2 C -0.05 -0.73 3.09 -11.54 -0.04 -0.76 16
3 C -0.14 -1.97 9.00 71.98 0.65 -1.33 16
4 C -0.12 -2.57 4.78 -19.85 -0.09 -2.67 16
5 C -0.08 -1.86 8.70 22.25 0.19 -1.67 16
6 C -0.22 -6.69 9.04 22.37 0.20 -6.49 16
7 C 0.10 3.41 6.69 22.51 0.15 3.56 16
8 O -0.33 -13.12 10.10 -87.73 -0.89 -14.00 16
9 C 0.06 2.40 4.31 71.98 0.31 2.71 16
10 C 0.20 9.73 2.58 29.85 0.08 9.81 16
11 H 0.06 2.92 7.20 -2.39 -0.02 2.90 16
12 O -0.58 -26.81 11.00 -144.35 -1.59 -28.40 16
13 C -0.57 -31.50 9.34 25.60 0.24 -31.26 16
14 H 0.05 3.03 7.99 -2.91 -0.02 3.01 16
15 C 0.04 2.24 5.47 84.66 0.46 2.70 16
16 N -0.93 -56.12 13.96 21.45 0.30 -55.82 16
17 Si 0.97 47.52 26.18 68.60 1.80 49.32 16
18 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16
19 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16
20 H -0.27 -13.01 6.54 99.48 0.65 -12.36 16
21 C -0.17 -4.73 9.99 22.37 0.22 -4.50 16
22 C -0.08 -1.72 9.66 22.25 0.22 -1.51 16
23 H 0.05 0.77 7.40 -2.38 -0.02 0.75 16
24 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16
26 H 0.09 1.11 7.87 -2.39 -0.02 1.09 16
27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16
28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
29 H 0.05 0.77 7.37 -2.39 -0.02 0.75 16
30 H 0.14 2.76 7.09 -2.91 -0.02 2.73 16
31 H 0.12 3.76 6.30 -2.91 -0.02 3.74 16
32 H 0.07 2.50 7.66 -2.39 -0.02 2.48 16
33 H 0.06 2.53 7.66 -2.39 -0.02 2.51 16
34 H 0.38 14.88 9.04 -74.05 -0.67 14.21 16
35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16
36 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16
37 H 0.15 2.41 7.94 -2.91 -0.02 2.39 16
Total: -1.00 -65.25 306.13 3.19 -62.06
By element:
Atomic # 1 Polarization: 19.27 SS G_CDS: 0.33 Total: 19.60 kcal
Atomic # 6 Polarization: -35.99 SS G_CDS: 3.24 Total: -32.75 kcal
Atomic # 7 Polarization: -56.12 SS G_CDS: 0.30 Total: -55.82 kcal
Atomic # 8 Polarization: -39.93 SS G_CDS: -2.47 Total: -42.40 kcal
Atomic # 14 Polarization: 47.52 SS G_CDS: 1.80 Total: 49.32 kcal
Total: -65.25 3.19 -62.06 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000041232619.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.130 kcal
(2) G-P(sol) polarization free energy of solvation -65.250 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.380 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.058 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.188 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds