Wall clock time and date at job start Mon Mar 30 2020 06:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.46844 * 2 1 4 4 C 1.35999 * 116.99797 * 179.97438 * 3 2 1 5 5 C 1.38565 * 120.07412 * 359.95719 * 4 3 2 6 6 C 1.38236 * 120.00143 * 180.02562 * 5 4 3 7 7 C 1.38258 * 120.14793 * 0.02562 * 6 5 4 8 8 C 1.38240 * 120.14223 * 0.02562 * 7 6 5 9 9 C 1.38565 * 120.00400 * 359.97438 * 8 7 6 10 10 O 1.35995 * 120.07710 * 180.02562 * 9 8 7 11 11 C 1.42899 * 116.99836 * 2.02910 * 10 9 8 12 12 C 1.53000 * 109.46940 * 63.61529 * 11 10 9 13 13 C 1.52995 * 109.47086 * 183.61115 * 11 10 9 14 14 C 1.50697 * 109.47537 * 303.61653 * 11 10 9 15 15 H 1.08005 * 119.99801 * 359.97438 * 14 11 10 16 16 C 1.37872 * 120.00242 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00142 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00031 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46881 * 90.00316 * 18 16 14 20 20 H 1.48504 * 109.47042 * 210.00272 * 18 16 14 21 21 H 1.48499 * 109.47296 * 330.00287 * 18 16 14 22 22 H 1.09003 * 109.47234 * 299.99749 * 1 2 3 23 23 H 1.09003 * 109.47310 * 59.99673 * 1 2 3 24 24 H 1.09004 * 109.47234 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46832 * 240.00408 * 2 1 3 26 26 H 1.08999 * 109.46874 * 120.00107 * 2 1 3 27 27 H 1.08003 * 119.99714 * 0.04826 * 5 4 3 28 28 H 1.07994 * 119.92850 * 180.27392 * 6 5 4 29 29 H 1.07996 * 119.92791 * 180.02562 * 7 6 5 30 30 H 1.08000 * 119.99760 * 180.02562 * 8 7 6 31 31 H 1.09005 * 109.47421 * 66.22149 * 12 11 10 32 32 H 1.09005 * 109.47369 * 186.22375 * 12 11 10 33 33 H 1.09003 * 109.47279 * 306.22470 * 12 11 10 34 34 H 1.09001 * 109.47160 * 56.45431 * 13 11 10 35 35 H 1.09008 * 109.47275 * 176.45278 * 13 11 10 36 36 H 1.08997 * 109.47395 * 296.45025 * 13 11 10 37 37 H 0.96996 * 120.00095 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.2000 0.4277 0.0020 6 6 5.5702 0.6106 0.0030 7 6 6.1003 1.8875 0.0033 8 6 5.2624 2.9870 0.0029 9 6 3.8880 2.8107 0.0018 10 8 3.0623 3.8913 0.0010 11 6 3.6795 5.1793 -0.0438 12 6 4.4424 5.3337 -1.3611 13 6 2.6045 6.2636 0.0529 14 6 4.6379 5.3176 1.1108 15 1 4.7629 4.5034 1.8094 16 6 5.3552 6.4835 1.2755 17 7 5.2027 7.4751 0.4252 18 14 6.5427 6.6551 2.7073 19 1 7.8874 6.1788 2.2948 20 1 6.6258 8.0812 3.1133 21 1 6.0591 5.8420 3.8518 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7885 -0.5708 0.0018 28 1 6.2281 -0.2458 -0.0003 29 1 7.1714 2.0263 0.0037 30 1 5.6790 3.9834 0.0027 31 1 3.7359 5.3444 -2.1911 32 1 5.0028 6.2686 -1.3490 33 1 5.1319 4.4982 -1.4817 34 1 2.0199 6.1157 0.9610 35 1 3.0792 7.2445 0.0822 36 1 1.9484 6.2034 -0.8154 37 1 5.7071 8.2955 0.5413 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232620.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:21 Heat of formation + Delta-G solvation = -47.120598 kcal Electronic energy + Delta-G solvation = -19024.880924 eV Core-core repulsion = 16154.408950 eV Total energy + Delta-G solvation = -2870.471974 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.87681 -38.13282 -36.22934 -33.71608 -31.61756 -30.44897 -29.65498 -28.24250 -25.83683 -25.41183 -23.63672 -21.72132 -21.25597 -19.53081 -18.00055 -16.88142 -15.78175 -15.57844 -15.52801 -14.68887 -14.16896 -13.80875 -13.70277 -13.51027 -12.91817 -12.54304 -12.33056 -12.17782 -11.65716 -11.58706 -11.21705 -11.15369 -11.08690 -10.90884 -10.72971 -10.60717 -10.51334 -10.41071 -10.20055 -9.75474 -9.58616 -8.86990 -8.48667 -7.87775 -6.91167 -6.17979 -4.27637 2.04999 2.19844 3.20997 3.28650 3.34073 3.68495 4.26374 4.50847 4.53327 5.06458 5.07482 5.14274 5.35719 5.45646 5.56809 5.74298 5.80312 5.91130 6.07026 6.19883 6.20658 6.52064 6.60531 6.65344 6.83622 6.87772 6.95901 7.05168 7.14612 7.30540 7.38351 7.54235 7.56817 7.72730 7.89320 8.00743 8.11303 8.52595 8.95856 9.37875 10.81728 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024563 B = 0.007427 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.635089 B = 3769.224832 C = 4323.208386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.306 6.306 4 C 0.071 3.929 5 C -0.187 4.187 6 C -0.143 4.143 7 C -0.132 4.132 8 C -0.162 4.162 9 C 0.139 3.861 10 O -0.314 6.314 11 C 0.226 3.774 12 C -0.178 4.178 13 C -0.124 4.124 14 C -0.537 4.537 15 H 0.068 0.932 16 C 0.069 3.931 17 N -0.882 5.882 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.272 1.272 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.182 0.818 31 H 0.020 0.980 32 H 0.099 0.901 33 H 0.045 0.955 34 H 0.036 0.964 35 H 0.102 0.898 36 H 0.020 0.980 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 -10.781 -1.661 11.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.221 6.221 4 C 0.026 3.974 5 C -0.206 4.206 6 C -0.162 4.162 7 C -0.150 4.150 8 C -0.180 4.180 9 C 0.092 3.908 10 O -0.229 6.229 11 C 0.190 3.810 12 C -0.236 4.236 13 C -0.181 4.181 14 C -0.574 4.574 15 H 0.087 0.913 16 C -0.134 4.134 17 N -0.519 5.519 18 Si 0.724 3.276 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.197 1.197 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.133 0.867 30 H 0.198 0.802 31 H 0.039 0.961 32 H 0.118 0.882 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.120 0.880 36 H 0.039 0.961 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.746 -10.400 -1.688 10.888 hybrid contribution 0.971 -0.120 0.796 1.262 sum -1.775 -10.519 -0.892 10.705 Atomic orbital electron populations 1.21740 0.93351 1.02071 1.03550 1.22625 0.95469 0.83381 1.00555 1.86180 1.18958 1.27306 1.89632 1.18346 0.82332 0.91841 1.04902 1.20777 0.94131 0.96539 1.09152 1.20623 0.93947 0.96941 1.04683 1.20934 0.99349 0.92210 1.02515 1.22478 0.91737 1.02588 1.01170 1.18224 0.89698 0.85442 0.97474 1.86071 1.35622 1.14363 1.86799 1.19625 0.91170 0.76371 0.93835 1.22622 1.00382 1.04203 0.96351 1.21736 0.96913 1.01358 0.98101 1.21639 1.23334 1.01363 1.11088 0.91345 1.24839 0.96950 0.95246 0.96359 1.69774 1.41215 1.05141 1.35814 0.86493 0.81085 0.77469 0.82562 1.20325 1.20958 1.19692 0.91598 0.91637 0.90999 0.92811 0.92783 0.86265 0.87063 0.86717 0.80159 0.96063 0.88240 0.93594 0.94503 0.87972 0.96103 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 37.16 0.38 -1.31 16 2 C 0.06 0.77 5.46 37.16 0.20 0.97 16 3 O -0.31 -5.97 9.92 -34.24 -0.34 -6.31 16 4 C 0.07 1.45 6.70 -39.12 -0.26 1.19 16 5 C -0.19 -3.24 9.04 -39.46 -0.36 -3.60 16 6 C -0.14 -2.41 10.04 -39.57 -0.40 -2.81 16 7 C -0.13 -2.45 10.04 -39.57 -0.40 -2.85 16 8 C -0.16 -3.54 6.29 -39.46 -0.25 -3.79 16 9 C 0.14 3.22 6.01 -39.12 -0.24 2.98 16 10 O -0.31 -7.98 9.57 -34.23 -0.33 -8.31 16 11 C 0.23 5.71 0.84 -91.78 -0.08 5.63 16 12 C -0.18 -4.27 8.07 37.16 0.30 -3.97 16 13 C -0.12 -3.02 8.66 37.16 0.32 -2.70 16 14 C -0.54 -14.09 5.41 -34.44 -0.19 -14.27 16 15 H 0.07 1.86 6.73 -52.48 -0.35 1.51 16 16 C 0.07 1.76 5.12 -17.82 -0.09 1.67 16 17 N -0.88 -22.91 9.30 55.43 0.52 -22.39 16 18 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.67 7.67 -51.93 -0.40 0.27 16 26 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 27 H 0.12 1.68 6.30 -52.48 -0.33 1.35 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.18 4.28 3.78 -52.49 -0.20 4.08 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 2.51 5.93 -51.93 -0.31 2.20 16 33 H 0.05 1.05 5.02 -51.93 -0.26 0.79 16 34 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 2.60 5.98 -51.92 -0.31 2.29 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 293.96 15.07 4.43 4.43 Total: -1.00 -27.97 293.96 -6.86 -34.83 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.07 Total: 5.29 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -1.04 Total: -22.86 kcal Atomic # 7 Polarization: -22.91 SS G_CDS: 0.52 Total: -22.39 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.67 Total: -14.62 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.97 -6.86 -34.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232620.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.293 kcal (2) G-P(sol) polarization free energy of solvation -27.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds