Wall clock time and date at job start Mon Mar 30 2020 06:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.46844 * 2 1 4 4 C 1.35999 * 116.99797 * 179.97438 * 3 2 1 5 5 C 1.38565 * 120.07412 * 359.95719 * 4 3 2 6 6 C 1.38236 * 120.00143 * 180.02562 * 5 4 3 7 7 C 1.38258 * 120.14793 * 0.02562 * 6 5 4 8 8 C 1.38240 * 120.14223 * 0.02562 * 7 6 5 9 9 C 1.38565 * 120.00400 * 359.97438 * 8 7 6 10 10 O 1.35995 * 120.07710 * 180.02562 * 9 8 7 11 11 C 1.42899 * 116.99836 * 2.02910 * 10 9 8 12 12 C 1.53000 * 109.46940 * 63.61529 * 11 10 9 13 13 C 1.52995 * 109.47086 * 183.61115 * 11 10 9 14 14 C 1.50697 * 109.47537 * 303.61653 * 11 10 9 15 15 H 1.08005 * 119.99801 * 359.97438 * 14 11 10 16 16 C 1.37872 * 120.00242 * 179.97438 * 14 11 10 17 17 N 1.31517 * 120.00142 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 120.00031 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.46881 * 90.00316 * 18 16 14 20 20 H 1.48504 * 109.47042 * 210.00272 * 18 16 14 21 21 H 1.48499 * 109.47296 * 330.00287 * 18 16 14 22 22 H 1.09003 * 109.47234 * 299.99749 * 1 2 3 23 23 H 1.09003 * 109.47310 * 59.99673 * 1 2 3 24 24 H 1.09004 * 109.47234 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46832 * 240.00408 * 2 1 3 26 26 H 1.08999 * 109.46874 * 120.00107 * 2 1 3 27 27 H 1.08003 * 119.99714 * 0.04826 * 5 4 3 28 28 H 1.07994 * 119.92850 * 180.27392 * 6 5 4 29 29 H 1.07996 * 119.92791 * 180.02562 * 7 6 5 30 30 H 1.08000 * 119.99760 * 180.02562 * 8 7 6 31 31 H 1.09005 * 109.47421 * 66.22149 * 12 11 10 32 32 H 1.09005 * 109.47369 * 186.22375 * 12 11 10 33 33 H 1.09003 * 109.47279 * 306.22470 * 12 11 10 34 34 H 1.09001 * 109.47160 * 56.45431 * 13 11 10 35 35 H 1.09008 * 109.47275 * 176.45278 * 13 11 10 36 36 H 1.08997 * 109.47395 * 296.45025 * 13 11 10 37 37 H 0.96996 * 120.00095 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3545 1.5255 0.0005 5 6 4.2000 0.4277 0.0020 6 6 5.5702 0.6106 0.0030 7 6 6.1003 1.8875 0.0033 8 6 5.2624 2.9870 0.0029 9 6 3.8880 2.8107 0.0018 10 8 3.0623 3.8913 0.0010 11 6 3.6795 5.1793 -0.0438 12 6 4.4424 5.3337 -1.3611 13 6 2.6045 6.2636 0.0529 14 6 4.6379 5.3176 1.1108 15 1 4.7629 4.5034 1.8094 16 6 5.3552 6.4835 1.2755 17 7 5.2027 7.4751 0.4252 18 14 6.5427 6.6551 2.7073 19 1 7.8874 6.1788 2.2948 20 1 6.6258 8.0812 3.1133 21 1 6.0591 5.8420 3.8518 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7885 -0.5708 0.0018 28 1 6.2281 -0.2458 -0.0003 29 1 7.1714 2.0263 0.0037 30 1 5.6790 3.9834 0.0027 31 1 3.7359 5.3444 -2.1911 32 1 5.0028 6.2686 -1.3490 33 1 5.1319 4.4982 -1.4817 34 1 2.0199 6.1157 0.9610 35 1 3.0792 7.2445 0.0822 36 1 1.9484 6.2034 -0.8154 37 1 5.7071 8.2955 0.5413 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232620.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:21 Heat of formation + Delta-G solvation = -61.988217 kcal Electronic energy + Delta-G solvation = -19025.525632 eV Core-core repulsion = 16154.408950 eV Total energy + Delta-G solvation = -2871.116682 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.42484 -39.70920 -37.72578 -35.61106 -32.85040 -32.20523 -31.17331 -29.72854 -27.74507 -27.40061 -24.86999 -23.24984 -22.67871 -21.27864 -19.60234 -18.47704 -17.47791 -17.11349 -16.94825 -16.38744 -15.62886 -15.53110 -15.31601 -15.08554 -14.43479 -13.97720 -13.61750 -13.48311 -13.33234 -13.27443 -12.90422 -12.84485 -12.61027 -12.55363 -12.49948 -12.37248 -12.18698 -12.00570 -11.54707 -11.44985 -11.42310 -10.77807 -10.45051 -9.36923 -8.51689 -8.13106 -6.29036 0.56760 0.70707 1.40068 1.42909 1.52247 2.38090 2.43755 2.84033 3.00327 3.09064 4.02583 4.10859 4.24251 4.31488 4.34931 4.42112 4.58921 4.63919 4.67422 4.77011 4.82797 4.91353 4.97284 5.01178 5.14233 5.20211 5.23955 5.39674 5.47064 5.52448 5.59030 5.78424 5.82011 5.92298 6.11900 6.14304 6.44295 6.66713 7.10990 7.39501 8.84936 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.024563 B = 0.007427 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.635089 B = 3769.224832 C = 4323.208386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.337 6.337 4 C 0.061 3.939 5 C -0.180 4.180 6 C -0.126 4.126 7 C -0.139 4.139 8 C -0.178 4.178 9 C 0.092 3.908 10 O -0.339 6.339 11 C 0.220 3.780 12 C -0.165 4.165 13 C -0.118 4.118 14 C -0.544 4.544 15 H 0.050 0.950 16 C 0.034 3.966 17 N -0.898 5.898 18 Si 0.952 3.048 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.279 1.279 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.107 0.893 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.158 0.842 28 H 0.156 0.844 29 H 0.138 0.862 30 H 0.156 0.844 31 H 0.024 0.976 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.029 0.971 35 H 0.091 0.909 36 H 0.031 0.969 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.684 -13.385 -1.496 13.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.252 6.252 4 C 0.016 3.984 5 C -0.198 4.198 6 C -0.144 4.144 7 C -0.157 4.157 8 C -0.196 4.196 9 C 0.046 3.954 10 O -0.255 6.255 11 C 0.184 3.816 12 C -0.223 4.223 13 C -0.176 4.176 14 C -0.581 4.581 15 H 0.068 0.932 16 C -0.167 4.167 17 N -0.535 5.535 18 Si 0.777 3.223 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.204 1.204 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.126 0.874 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.176 0.824 28 H 0.174 0.826 29 H 0.155 0.845 30 H 0.173 0.827 31 H 0.043 0.957 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.109 0.891 36 H 0.050 0.950 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.998 -13.018 -1.532 13.259 hybrid contribution 0.704 0.522 0.723 1.136 sum -1.295 -12.496 -0.808 12.589 Atomic orbital electron populations 1.21792 0.91780 1.04124 1.02703 1.23048 0.96823 0.81172 1.02066 1.86151 1.18586 1.30922 1.89574 1.18606 0.83448 0.91716 1.04602 1.21236 0.94123 0.97235 1.07225 1.21128 0.94384 0.97430 1.01450 1.21236 1.00214 0.92203 1.02083 1.22278 0.91911 1.02660 1.02785 1.18653 0.90262 0.85832 1.00654 1.85984 1.36626 1.14819 1.88022 1.19601 0.91096 0.76975 0.93920 1.22461 1.00219 1.03479 0.96141 1.21648 0.96898 1.00803 0.98246 1.21599 1.24163 1.01130 1.11237 0.93163 1.25411 0.98105 0.94880 0.98331 1.69851 1.41678 1.05332 1.36684 0.85647 0.79547 0.77378 0.79705 1.19474 1.20337 1.20449 0.92597 0.92379 0.87414 0.90981 0.91267 0.82442 0.82619 0.84452 0.82703 0.95692 0.89672 0.93214 0.95177 0.89092 0.94968 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 10.28 71.98 0.74 -2.28 16 2 C 0.04 1.09 5.46 71.98 0.39 1.48 16 3 O -0.34 -12.94 9.92 -79.67 -0.79 -13.73 16 4 C 0.06 2.46 6.70 22.57 0.15 2.62 16 5 C -0.18 -5.62 9.04 22.35 0.20 -5.42 16 6 C -0.13 -3.73 10.04 22.27 0.22 -3.51 16 7 C -0.14 -4.91 10.04 22.27 0.22 -4.69 16 8 C -0.18 -7.89 6.29 22.35 0.14 -7.75 16 9 C 0.09 4.34 6.01 22.57 0.14 4.48 16 10 O -0.34 -17.89 9.57 -79.63 -0.76 -18.65 16 11 C 0.22 11.53 0.84 -11.54 -0.01 11.52 16 12 C -0.17 -8.20 8.07 71.98 0.58 -7.62 16 13 C -0.12 -5.99 8.66 71.98 0.62 -5.37 16 14 C -0.54 -29.46 5.41 25.60 0.14 -29.32 16 15 H 0.05 2.85 6.73 -2.91 -0.02 2.83 16 16 C 0.03 1.75 5.12 84.65 0.43 2.19 16 17 N -0.90 -47.44 9.30 21.45 0.20 -47.24 16 18 Si 0.95 42.14 29.54 68.60 2.03 44.17 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.07 1.54 7.67 -2.39 -0.02 1.52 16 26 H 0.07 1.52 7.66 -2.39 -0.02 1.50 16 27 H 0.16 3.64 6.30 -2.91 -0.02 3.62 16 28 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 29 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.16 7.61 3.78 -2.91 -0.01 7.60 16 31 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.08 4.43 5.93 -2.38 -0.01 4.42 16 33 H 0.05 2.37 5.02 -2.39 -0.01 2.36 16 34 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 4.78 5.98 -2.38 -0.01 4.76 16 36 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -62.23 293.96 5.71 -56.52 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 1.06 Total: 22.61 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 3.98 Total: -43.66 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.20 Total: -47.24 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.55 Total: -32.39 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -62.23 5.71 -56.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232620.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.473 kcal (2) G-P(sol) polarization free energy of solvation -62.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds