Wall clock time and date at job start Mon Mar 30 2020 06:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42907 * 109.46665 * 2 1 4 4 C 1.35980 * 116.99486 * 180.02562 * 3 2 1 5 5 C 1.38700 * 120.00473 * 359.72384 * 4 3 2 6 6 C 1.38132 * 119.99940 * 179.76423 * 5 4 3 7 7 C 1.38698 * 120.00127 * 0.51266 * 6 5 4 8 8 O 1.35984 * 119.99807 * 179.71993 * 7 6 5 9 9 C 1.42892 * 117.00371 * 355.81006 * 8 7 6 10 10 C 1.52996 * 109.47186 * 178.40655 * 9 8 7 11 11 C 1.53000 * 109.47351 * 298.40988 * 9 8 7 12 12 C 1.50705 * 109.46772 * 58.40985 * 9 8 7 13 13 H 1.07994 * 120.00417 * 359.97438 * 12 9 8 14 14 C 1.37884 * 119.99600 * 180.02562 * 12 9 8 15 15 N 1.31507 * 120.00222 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99533 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47580 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47134 * 120.00223 * 16 14 12 19 19 H 1.48500 * 109.47064 * 239.99915 * 16 14 12 20 20 C 1.38694 * 119.99849 * 359.74517 * 7 6 5 21 21 C 1.38136 * 120.00138 * 359.97438 * 20 7 6 22 22 H 1.09003 * 109.46445 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47111 * 299.99738 * 1 2 3 24 24 H 1.08990 * 109.47507 * 60.00050 * 1 2 3 25 25 H 1.08998 * 109.47111 * 240.00262 * 2 1 3 26 26 H 1.08999 * 109.47456 * 119.99634 * 2 1 3 27 27 H 1.07996 * 119.99890 * 0.02562 * 5 4 3 28 28 H 1.08001 * 119.99998 * 180.23190 * 6 5 4 29 29 H 1.09004 * 109.47052 * 63.99085 * 10 9 8 30 30 H 1.09002 * 109.47021 * 183.98857 * 10 9 8 31 31 H 1.09000 * 109.47168 * 303.98716 * 10 9 8 32 32 H 1.09004 * 109.46955 * 53.14416 * 11 9 8 33 33 H 1.08997 * 109.47257 * 173.13971 * 11 9 8 34 34 H 1.08999 * 109.46902 * 293.14318 * 11 9 8 35 35 H 0.97005 * 120.00408 * 179.97438 * 15 14 12 36 36 H 1.08003 * 120.00183 * 179.97438 * 20 7 6 37 37 H 1.08001 * 120.00047 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 4.1993 0.4257 0.0047 6 6 5.5687 0.6067 -0.0007 7 6 6.0988 1.8884 -0.0008 8 8 7.4469 2.0666 -0.0004 9 6 8.2565 0.8928 0.0930 10 6 9.7339 1.2866 0.0388 11 6 7.9675 0.1777 1.4144 12 6 7.9397 -0.0286 -1.0567 13 1 7.1944 0.2537 -1.7855 14 6 8.6007 -1.2326 -1.1774 15 7 9.5079 -1.5767 -0.2897 16 14 8.2075 -2.3751 -2.6021 17 1 7.1578 -1.7608 -3.4541 18 1 9.4333 -2.5989 -3.4100 19 1 7.7185 -3.6742 -2.0744 20 6 5.2539 2.9883 -0.0006 21 6 3.8844 2.8072 -0.0010 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.7866 -0.5723 0.0088 28 1 6.2267 -0.2497 -0.0004 29 1 9.9799 1.8953 0.9089 30 1 10.3498 0.3873 0.0386 31 1 9.9246 1.8577 -0.8699 32 1 6.8951 0.0055 1.5073 33 1 8.4917 -0.7778 1.4327 34 1 8.3095 0.7958 2.2444 35 1 9.9727 -2.4239 -0.3744 36 1 5.6666 3.9863 -0.0002 37 1 3.2265 3.6637 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041232627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:26 Heat of formation + Delta-G solvation = -49.885370 kcal Electronic energy + Delta-G solvation = -18726.762359 eV Core-core repulsion = 15856.170496 eV Total energy + Delta-G solvation = -2870.591863 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.82893 -38.55078 -35.97600 -33.69590 -31.62517 -30.74511 -30.04540 -27.91676 -25.85188 -25.45534 -23.62785 -22.10234 -20.96875 -19.68643 -17.89327 -17.21200 -15.83665 -15.68778 -15.62648 -14.64772 -13.97394 -13.79504 -13.60122 -13.20730 -13.14200 -12.98001 -12.42430 -12.34015 -11.77268 -11.66410 -11.38235 -11.31250 -11.19388 -10.97995 -10.85850 -10.64359 -10.57239 -10.28692 -10.19084 -9.64979 -9.50518 -8.80213 -8.53149 -8.32086 -6.83842 -6.22413 -4.32278 1.97539 2.24455 3.16016 3.25560 3.31233 3.57608 4.22633 4.49535 4.58964 4.98631 5.01791 5.06629 5.30374 5.43185 5.56664 5.61130 5.80238 5.93407 6.04918 6.10384 6.19837 6.46945 6.58999 6.63691 6.71321 6.80928 6.90071 7.06696 7.14014 7.18813 7.33047 7.44210 7.50745 7.73897 7.86465 7.98129 8.05487 8.47423 8.90710 9.33501 10.77150 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021876 B = 0.007087 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.627279 B = 3950.126656 C = 4815.497829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.325 6.325 4 C 0.066 3.934 5 C -0.181 4.181 6 C -0.154 4.154 7 C 0.130 3.870 8 O -0.326 6.326 9 C 0.227 3.773 10 C -0.125 4.125 11 C -0.179 4.179 12 C -0.536 4.536 13 H 0.069 0.931 14 C 0.068 3.932 15 N -0.881 5.881 16 Si 0.895 3.105 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.282 1.282 20 C -0.141 4.141 21 C -0.127 4.127 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.118 0.882 28 H 0.179 0.821 29 H 0.020 0.980 30 H 0.102 0.898 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.021 0.979 35 H 0.265 0.735 36 H 0.125 0.875 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.421 1.754 1.500 10.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.241 6.241 4 C 0.022 3.978 5 C -0.200 4.200 6 C -0.172 4.172 7 C 0.083 3.917 8 O -0.241 6.241 9 C 0.191 3.809 10 C -0.182 4.182 11 C -0.236 4.236 12 C -0.573 4.573 13 H 0.087 0.913 14 C -0.135 4.135 15 N -0.519 5.519 16 Si 0.723 3.277 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.160 4.160 21 C -0.145 4.145 22 H 0.092 0.908 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.136 0.864 28 H 0.195 0.805 29 H 0.039 0.961 30 H 0.121 0.879 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.143 0.857 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.301 1.905 1.530 10.586 hybrid contribution -0.084 -1.148 -0.779 1.390 sum -10.385 0.757 0.751 10.439 Atomic orbital electron populations 1.21751 0.93412 1.02379 1.03126 1.22632 0.95149 0.82983 1.01215 1.85974 1.19794 1.28170 1.90117 1.18780 0.81594 0.94267 1.03156 1.21116 0.94213 0.97269 1.07405 1.22463 0.95107 0.99558 1.00070 1.18836 0.84483 0.92858 0.95509 1.85982 1.12931 1.38228 1.86911 1.19607 0.87280 0.80254 0.93789 1.21751 0.96399 1.02006 0.98055 1.22636 1.00995 1.03646 0.96364 1.21669 1.22718 1.02782 1.10156 0.91318 1.24847 0.94529 0.97793 0.96288 1.69778 1.24695 1.22860 1.34557 0.86457 0.78604 0.80416 0.82265 1.19496 1.20654 1.20751 1.20168 0.91370 0.97763 1.06703 1.19933 0.93979 0.94308 1.06319 0.90803 0.91798 0.91797 0.92431 0.92457 0.86407 0.80470 0.96088 0.87946 0.94491 0.93561 0.88258 0.96037 0.92455 0.85677 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.06 0.72 5.46 37.16 0.20 0.92 16 3 O -0.33 -5.31 10.14 -19.68 -0.20 -5.51 16 4 C 0.07 1.20 6.69 -39.24 -0.26 0.93 16 5 C -0.18 -3.44 9.03 -39.45 -0.36 -3.80 16 6 C -0.15 -3.33 6.28 -39.45 -0.25 -3.58 16 7 C 0.13 2.87 6.01 -39.24 -0.24 2.63 16 8 O -0.33 -7.85 9.78 -19.69 -0.19 -8.04 16 9 C 0.23 5.57 0.84 -91.77 -0.08 5.49 16 10 C -0.12 -2.96 8.67 37.16 0.32 -2.63 16 11 C -0.18 -4.20 8.05 37.16 0.30 -3.90 16 12 C -0.54 -13.80 5.43 -34.44 -0.19 -13.99 16 13 H 0.07 1.84 6.83 -52.49 -0.36 1.49 16 14 C 0.07 1.73 5.12 -17.82 -0.09 1.63 16 15 N -0.88 -22.62 9.30 55.43 0.52 -22.10 16 16 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 C -0.14 -2.70 9.98 -39.45 -0.39 -3.10 16 21 C -0.13 -2.24 9.98 -39.45 -0.39 -2.64 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 26 H 0.06 0.70 7.65 -51.93 -0.40 0.31 16 27 H 0.12 1.97 6.29 -52.49 -0.33 1.64 16 28 H 0.18 4.17 3.80 -52.49 -0.20 3.97 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.10 2.55 5.97 -51.93 -0.31 2.24 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 1.05 4.94 -51.93 -0.26 0.79 16 33 H 0.10 2.47 5.92 -51.93 -0.31 2.16 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 36 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 37 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 294.24 15.07 4.43 4.43 Total: -1.00 -26.91 294.24 -6.58 -33.49 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.07 Total: 5.73 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -1.04 Total: -23.10 kcal Atomic # 7 Polarization: -22.62 SS G_CDS: 0.52 Total: -22.10 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.39 Total: -13.55 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.91 -6.58 -33.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.397 kcal (2) G-P(sol) polarization free energy of solvation -26.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds