Wall clock time and date at job start Mon Mar 30 2020 06:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42907 * 109.46665 * 2 1 4 4 C 1.35980 * 116.99486 * 180.02562 * 3 2 1 5 5 C 1.38700 * 120.00473 * 359.72384 * 4 3 2 6 6 C 1.38132 * 119.99940 * 179.76423 * 5 4 3 7 7 C 1.38698 * 120.00127 * 0.51266 * 6 5 4 8 8 O 1.35984 * 119.99807 * 179.71993 * 7 6 5 9 9 C 1.42892 * 117.00371 * 355.81006 * 8 7 6 10 10 C 1.52996 * 109.47186 * 178.40655 * 9 8 7 11 11 C 1.53000 * 109.47351 * 298.40988 * 9 8 7 12 12 C 1.50705 * 109.46772 * 58.40985 * 9 8 7 13 13 H 1.07994 * 120.00417 * 359.97438 * 12 9 8 14 14 C 1.37884 * 119.99600 * 180.02562 * 12 9 8 15 15 N 1.31507 * 120.00222 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99533 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47580 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47134 * 120.00223 * 16 14 12 19 19 H 1.48500 * 109.47064 * 239.99915 * 16 14 12 20 20 C 1.38694 * 119.99849 * 359.74517 * 7 6 5 21 21 C 1.38136 * 120.00138 * 359.97438 * 20 7 6 22 22 H 1.09003 * 109.46445 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47111 * 299.99738 * 1 2 3 24 24 H 1.08990 * 109.47507 * 60.00050 * 1 2 3 25 25 H 1.08998 * 109.47111 * 240.00262 * 2 1 3 26 26 H 1.08999 * 109.47456 * 119.99634 * 2 1 3 27 27 H 1.07996 * 119.99890 * 0.02562 * 5 4 3 28 28 H 1.08001 * 119.99998 * 180.23190 * 6 5 4 29 29 H 1.09004 * 109.47052 * 63.99085 * 10 9 8 30 30 H 1.09002 * 109.47021 * 183.98857 * 10 9 8 31 31 H 1.09000 * 109.47168 * 303.98716 * 10 9 8 32 32 H 1.09004 * 109.46955 * 53.14416 * 11 9 8 33 33 H 1.08997 * 109.47257 * 173.13971 * 11 9 8 34 34 H 1.08999 * 109.46902 * 293.14318 * 11 9 8 35 35 H 0.97005 * 120.00408 * 179.97438 * 15 14 12 36 36 H 1.08003 * 120.00183 * 179.97438 * 20 7 6 37 37 H 1.08001 * 120.00047 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3544 1.5255 -0.0005 5 6 4.1993 0.4257 0.0047 6 6 5.5687 0.6067 -0.0007 7 6 6.0988 1.8884 -0.0008 8 8 7.4469 2.0666 -0.0004 9 6 8.2565 0.8928 0.0930 10 6 9.7339 1.2866 0.0388 11 6 7.9675 0.1777 1.4144 12 6 7.9397 -0.0286 -1.0567 13 1 7.1944 0.2537 -1.7855 14 6 8.6007 -1.2326 -1.1774 15 7 9.5079 -1.5767 -0.2897 16 14 8.2075 -2.3751 -2.6021 17 1 7.1578 -1.7608 -3.4541 18 1 9.4333 -2.5989 -3.4100 19 1 7.7185 -3.6742 -2.0744 20 6 5.2539 2.9883 -0.0006 21 6 3.8844 2.8072 -0.0010 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.7866 -0.5723 0.0088 28 1 6.2267 -0.2497 -0.0004 29 1 9.9799 1.8953 0.9089 30 1 10.3498 0.3873 0.0386 31 1 9.9246 1.8577 -0.8699 32 1 6.8951 0.0055 1.5073 33 1 8.4917 -0.7778 1.4327 34 1 8.3095 0.7958 2.2444 35 1 9.9727 -2.4239 -0.3744 36 1 5.6666 3.9863 -0.0002 37 1 3.2265 3.6637 -0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041232627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:26 Heat of formation + Delta-G solvation = -63.770765 kcal Electronic energy + Delta-G solvation = -18727.364475 eV Core-core repulsion = 15856.170496 eV Total energy + Delta-G solvation = -2871.193979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.35754 -40.05576 -37.49358 -35.54190 -32.70268 -32.51285 -31.58928 -29.44689 -27.67495 -27.40339 -24.79529 -23.67438 -22.30713 -21.45898 -19.43924 -18.79914 -17.50357 -17.21309 -16.94238 -16.39902 -15.59946 -15.49117 -15.13633 -14.63971 -14.62809 -14.27507 -13.83308 -13.55517 -13.35637 -13.26636 -13.06275 -12.87119 -12.77630 -12.53150 -12.50285 -12.32373 -12.28329 -12.13285 -11.68400 -11.26264 -11.21608 -10.62261 -10.45833 -9.83045 -8.42921 -8.13926 -6.30257 0.46787 0.71434 1.36774 1.41691 1.51434 2.35990 2.38346 2.87754 2.96209 3.07754 3.98157 4.06637 4.08490 4.27442 4.39803 4.48187 4.58733 4.59730 4.63782 4.77366 4.83958 4.91643 4.97468 5.03635 5.12787 5.18940 5.23327 5.32495 5.40648 5.50979 5.61441 5.63725 5.78717 5.86557 6.07444 6.14169 6.49090 6.61929 7.06065 7.38096 8.83242 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021876 B = 0.007087 C = 0.005813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.627279 B = 3950.126656 C = 4815.497829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 O -0.329 6.329 4 C 0.073 3.927 5 C -0.185 4.185 6 C -0.170 4.170 7 C 0.094 3.906 8 O -0.341 6.341 9 C 0.221 3.779 10 C -0.120 4.120 11 C -0.167 4.167 12 C -0.542 4.542 13 H 0.050 0.950 14 C 0.034 3.966 15 N -0.896 5.896 16 Si 0.948 3.052 17 H -0.277 1.277 18 H -0.278 1.278 19 H -0.275 1.275 20 C -0.136 4.136 21 C -0.123 4.123 22 H 0.097 0.903 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.135 0.865 28 H 0.155 0.845 29 H 0.035 0.965 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.028 0.972 35 H 0.268 0.732 36 H 0.144 0.856 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.332 1.879 1.386 12.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 O -0.244 6.244 4 C 0.028 3.972 5 C -0.204 4.204 6 C -0.188 4.188 7 C 0.048 3.952 8 O -0.257 6.257 9 C 0.184 3.816 10 C -0.177 4.177 11 C -0.225 4.225 12 C -0.580 4.580 13 H 0.069 0.931 14 C -0.167 4.167 15 N -0.534 5.534 16 Si 0.774 3.226 17 H -0.202 1.202 18 H -0.203 1.203 19 H -0.200 1.200 20 C -0.155 4.155 21 C -0.141 4.141 22 H 0.116 0.884 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.153 0.847 28 H 0.172 0.828 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.162 0.838 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.227 2.026 1.421 12.475 hybrid contribution 0.356 -1.162 -0.725 1.415 sum -11.871 0.864 0.696 11.923 Atomic orbital electron populations 1.21772 0.90844 1.04078 1.03358 1.22990 0.97214 0.81407 1.01554 1.85995 1.18345 1.30442 1.89628 1.18926 0.82520 0.94187 1.01556 1.21261 0.93311 0.98721 1.07120 1.22234 0.95985 0.98757 1.01820 1.19180 0.83923 0.94074 0.98000 1.85912 1.14160 1.37789 1.87836 1.19594 0.87711 0.80536 0.93709 1.21656 0.96047 1.01470 0.98542 1.22481 1.00952 1.02748 0.96319 1.21643 1.22513 1.03542 1.10292 0.93132 1.25387 0.94494 0.98709 0.98134 1.69852 1.25001 1.23193 1.35377 0.85645 0.78142 0.78952 0.79832 1.20174 1.20323 1.20036 1.20441 0.91744 0.97850 1.05449 1.20292 0.93736 0.95327 1.04776 0.88390 0.91468 0.91655 0.92294 0.91935 0.84682 0.82791 0.94621 0.89309 0.94830 0.93322 0.89860 0.95338 0.92235 0.83788 0.82828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 10.28 71.98 0.74 -1.61 16 2 C 0.04 1.00 5.46 71.98 0.39 1.39 16 3 O -0.33 -9.87 10.14 -93.32 -0.95 -10.81 16 4 C 0.07 2.49 6.69 22.49 0.15 2.64 16 5 C -0.19 -6.87 9.03 22.36 0.20 -6.67 16 6 C -0.17 -7.39 6.28 22.35 0.14 -7.25 16 7 C 0.09 4.15 6.01 22.49 0.14 4.29 16 8 O -0.34 -16.64 9.78 -93.37 -0.91 -17.55 16 9 C 0.22 11.02 0.84 -11.54 -0.01 11.01 16 10 C -0.12 -5.74 8.67 71.98 0.62 -5.11 16 11 C -0.17 -7.99 8.05 71.98 0.58 -7.41 16 12 C -0.54 -28.49 5.43 25.60 0.14 -28.35 16 13 H 0.05 2.79 6.83 -2.91 -0.02 2.77 16 14 C 0.03 1.72 5.12 84.66 0.43 2.16 16 15 N -0.90 -46.42 9.30 21.45 0.20 -46.22 16 16 Si 0.95 41.49 29.54 68.60 2.03 43.51 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 C -0.14 -5.02 9.98 22.35 0.22 -4.80 16 21 C -0.12 -4.05 9.98 22.36 0.22 -3.83 16 22 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.35 7.67 -2.39 -0.02 1.34 16 26 H 0.06 1.39 7.65 -2.39 -0.02 1.37 16 27 H 0.14 4.38 6.29 -2.91 -0.02 4.36 16 28 H 0.15 7.44 3.80 -2.91 -0.01 7.43 16 29 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.09 4.49 5.97 -2.39 -0.01 4.48 16 31 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 2.25 4.94 -2.39 -0.01 2.24 16 33 H 0.08 4.22 5.92 -2.39 -0.01 4.21 16 34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.27 13.17 8.31 -92.70 -0.77 12.40 16 36 H 0.14 4.65 8.06 -2.91 -0.02 4.63 16 37 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -56.99 294.24 5.40 -51.59 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 1.06 Total: 23.03 kcal Atomic # 6 Polarization: -47.52 SS G_CDS: 3.97 Total: -43.55 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.20 Total: -46.22 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -1.86 Total: -28.36 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -56.99 5.40 -51.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041232627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.181 kcal (2) G-P(sol) polarization free energy of solvation -56.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds