Wall clock time and date at job start Mon Mar 30 2020 06:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47075 * 2 1 4 4 C 1.42901 * 114.00102 * 186.28865 * 3 2 1 5 5 O 1.42894 * 109.46962 * 275.35527 * 4 3 2 6 6 C 1.42901 * 114.00023 * 77.08876 * 5 4 3 7 7 C 1.53003 * 109.47221 * 173.24267 * 6 5 4 8 8 C 1.50700 * 109.47139 * 155.35542 * 4 3 2 9 9 C 1.37644 * 120.12850 * 14.99987 * 8 4 3 10 10 C 1.38603 * 120.24948 * 179.97438 * 9 8 4 11 11 C 1.38658 * 120.50180 * 0.02562 * 10 9 8 12 12 C 1.37596 * 120.24790 * 0.02562 * 11 10 9 13 13 C 1.40696 * 120.12667 * 194.72624 * 8 4 3 14 14 C 1.41394 * 120.24233 * 359.97438 * 13 8 4 15 15 H 1.07990 * 120.00241 * 30.40366 * 14 13 8 16 16 C 1.39948 * 119.99675 * 210.39678 * 14 13 8 17 17 N 1.30826 * 120.00175 * 8.99227 * 16 14 13 18 18 Si 1.86800 * 119.99790 * 188.99112 * 16 14 13 19 19 H 1.48500 * 109.47318 * 60.00046 * 18 16 14 20 20 H 1.48506 * 109.47049 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47030 * 300.00050 * 18 16 14 22 22 H 1.09001 * 109.47200 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47350 * 300.00228 * 1 2 3 24 24 H 1.09003 * 109.47335 * 60.00482 * 1 2 3 25 25 H 1.09000 * 109.47202 * 240.00277 * 2 1 3 26 26 H 1.09001 * 109.46905 * 119.99816 * 2 1 3 27 27 H 1.08993 * 109.46984 * 35.35638 * 4 3 2 28 28 H 1.08995 * 109.47165 * 293.24408 * 6 5 4 29 29 H 1.08998 * 109.47063 * 53.24263 * 6 5 4 30 30 H 1.09008 * 109.47025 * 59.99997 * 7 6 5 31 31 H 1.09004 * 109.47121 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.47166 * 300.00140 * 7 6 5 33 33 H 1.08001 * 119.87450 * 0.02562 * 9 8 4 34 34 H 1.08006 * 119.75365 * 179.97438 * 10 9 8 35 35 H 1.08003 * 119.87712 * 180.02562 * 11 10 9 36 36 H 1.08003 * 120.12681 * 179.97438 * 12 11 10 37 37 H 0.96996 * 120.00109 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4235 1.4628 -0.1430 5 8 4.0439 1.3271 1.1370 6 6 4.1192 -0.0205 1.6065 7 6 4.9445 -0.0667 2.8940 8 6 3.7614 2.8113 -0.7246 9 6 2.8171 3.8126 -0.7420 10 6 3.1253 5.0539 -1.2759 11 6 4.3856 5.3021 -1.7983 12 6 5.3449 4.3158 -1.7923 13 6 5.0453 3.0536 -1.2467 14 6 6.0254 2.0346 -1.2284 15 1 5.7284 0.9984 -1.2946 16 6 7.3804 2.3689 -1.1248 17 7 7.7320 3.6027 -0.8686 18 14 8.6869 1.0534 -1.3521 19 1 8.5656 0.4646 -2.7100 20 1 10.0331 1.6601 -1.1936 21 1 8.5009 -0.0104 -0.3328 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7866 0.6791 -0.8077 28 1 3.1142 -0.3925 1.8056 29 1 4.5936 -0.6435 0.8483 30 1 4.4700 0.5563 3.6523 31 1 5.0015 -1.0946 3.2524 32 1 5.9495 0.3053 2.6950 33 1 1.8324 3.6304 -0.3375 34 1 2.3781 5.8337 -1.2858 35 1 4.6150 6.2733 -2.2114 36 1 6.3257 4.5111 -2.2001 37 1 8.6711 3.8343 -0.7964 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368575.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:16 Heat of formation + Delta-G solvation = -82.848289 kcal Electronic energy + Delta-G solvation = -18876.303902 eV Core-core repulsion = 16004.282659 eV Total energy + Delta-G solvation = -2872.021243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.86583 -37.09638 -35.71755 -33.58162 -31.88769 -30.27741 -29.83659 -29.18689 -25.48002 -24.03517 -22.99260 -21.92957 -20.80706 -19.71989 -17.24756 -16.83485 -16.68375 -15.59881 -14.91486 -14.67021 -14.34371 -13.96345 -13.29388 -13.10864 -12.87981 -12.52148 -12.45891 -12.23239 -11.69798 -11.66041 -11.50780 -11.46849 -11.14868 -11.05928 -10.96721 -10.70284 -10.51331 -10.41393 -9.58034 -9.36658 -9.23001 -9.19351 -9.02706 -7.42023 -7.27679 -6.68003 -4.37090 2.75685 2.96059 3.06320 3.08429 3.25677 3.94613 4.10514 4.54037 4.73999 5.11732 5.34073 5.38058 5.53155 5.55777 5.66316 5.74763 5.76549 5.86637 6.00475 6.10178 6.21745 6.27768 6.30315 6.34945 6.48643 6.59672 6.74812 7.09506 7.28342 7.35568 7.60453 7.62214 7.90698 7.99672 8.04984 8.13046 8.33107 8.61204 8.89359 8.95399 10.26499 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.009515 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.551439 B = 2941.949575 C = 4117.668059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.392 6.392 4 C 0.317 3.683 5 O -0.368 6.368 6 C 0.045 3.955 7 C -0.148 4.148 8 C -0.196 4.196 9 C -0.057 4.057 10 C -0.243 4.243 11 C -0.101 4.101 12 C -0.158 4.158 13 C 0.134 3.866 14 C -0.456 4.456 15 H 0.071 0.929 16 C 0.078 3.922 17 N -0.800 5.800 18 Si 0.907 3.093 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.266 1.266 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.364 -7.255 1.908 9.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 O -0.313 6.313 4 C 0.224 3.776 5 O -0.288 6.288 6 C -0.031 4.031 7 C -0.205 4.205 8 C -0.197 4.197 9 C -0.075 4.075 10 C -0.262 4.262 11 C -0.119 4.119 12 C -0.178 4.178 13 C 0.131 3.869 14 C -0.486 4.486 15 H 0.089 0.911 16 C -0.139 4.139 17 N -0.426 5.426 18 Si 0.731 3.269 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.191 1.191 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.139 0.861 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.181 -6.795 2.071 8.793 hybrid contribution 0.769 -1.018 -0.099 1.280 sum -4.413 -7.813 1.972 9.187 Atomic orbital electron populations 1.21723 0.94238 1.01545 1.03025 1.22722 0.95536 0.85266 0.99798 1.88010 1.24732 1.25138 1.93437 1.21478 0.76034 0.96714 0.83416 1.88257 1.78512 1.24862 1.37183 1.22638 0.98226 0.85839 0.96416 1.21709 1.01149 1.01063 0.96620 1.18968 0.97314 0.93297 1.10157 1.20364 0.97570 0.92424 0.97135 1.20417 0.97167 0.97001 1.11662 1.20767 0.93933 0.97593 0.99631 1.21310 0.98954 0.94067 1.03429 1.17307 0.89821 0.92933 0.86810 1.19371 0.90483 0.93953 1.44816 0.91058 1.25802 0.99673 0.96055 0.92387 1.69775 1.18972 1.18816 1.35041 0.86397 0.79305 0.81333 0.79847 1.18953 1.20256 1.19064 0.91711 0.92017 0.91922 0.93775 0.93185 0.93228 0.93812 0.93990 0.92173 0.92018 0.91592 0.88252 0.89324 0.89308 0.86090 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 37.16 0.38 -1.47 16 2 C 0.04 0.67 6.21 37.16 0.23 0.90 16 3 O -0.39 -7.96 8.84 -59.04 -0.52 -8.49 16 4 C 0.32 7.16 2.35 36.01 0.08 7.24 16 5 O -0.37 -8.38 10.16 -59.04 -0.60 -8.98 16 6 C 0.05 0.80 6.10 37.16 0.23 1.03 16 7 C -0.15 -2.28 10.28 37.16 0.38 -1.90 16 8 C -0.20 -4.98 5.54 -103.91 -0.58 -5.56 16 9 C -0.06 -1.37 9.35 -39.66 -0.37 -1.74 16 10 C -0.24 -5.69 10.05 -39.29 -0.39 -6.09 16 11 C -0.10 -2.43 10.02 -39.66 -0.40 -2.82 16 12 C -0.16 -4.18 8.65 -38.87 -0.34 -4.51 16 13 C 0.13 3.61 5.53 -106.83 -0.59 3.02 16 14 C -0.46 -12.06 8.35 -37.74 -0.32 -12.38 16 15 H 0.07 1.81 6.68 -52.49 -0.35 1.46 16 16 C 0.08 1.96 5.27 -17.34 -0.09 1.87 16 17 N -0.80 -20.95 10.88 55.55 0.60 -20.35 16 18 Si 0.91 18.84 29.57 -169.99 -5.03 13.82 16 19 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.65 7.94 -51.93 -0.41 0.23 16 26 H 0.05 0.73 5.03 -51.93 -0.26 0.46 16 27 H 0.05 1.10 6.41 -51.93 -0.33 0.77 16 28 H 0.04 0.69 5.22 -51.93 -0.27 0.42 16 29 H 0.04 0.71 7.97 -51.93 -0.41 0.30 16 30 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.10 2.26 7.13 -52.49 -0.37 1.89 16 34 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 35 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 36 H 0.12 3.26 6.31 -52.48 -0.33 2.93 16 37 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 LS Contribution 304.74 15.07 4.59 4.59 Total: -1.00 -28.99 304.74 -7.98 -36.98 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.26 Total: 4.84 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -1.77 Total: -22.41 kcal Atomic # 7 Polarization: -20.95 SS G_CDS: 0.60 Total: -20.35 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -1.12 Total: -17.47 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.99 -7.98 -36.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368575.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.873 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds