Wall clock time and date at job start Mon Mar 30 2020 06:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47075 * 2 1 4 4 C 1.42901 * 114.00102 * 186.28865 * 3 2 1 5 5 O 1.42894 * 109.46962 * 275.35527 * 4 3 2 6 6 C 1.42901 * 114.00023 * 77.08876 * 5 4 3 7 7 C 1.53003 * 109.47221 * 173.24267 * 6 5 4 8 8 C 1.50700 * 109.47139 * 155.35542 * 4 3 2 9 9 C 1.37644 * 120.12850 * 14.99987 * 8 4 3 10 10 C 1.38603 * 120.24948 * 179.97438 * 9 8 4 11 11 C 1.38658 * 120.50180 * 0.02562 * 10 9 8 12 12 C 1.37596 * 120.24790 * 0.02562 * 11 10 9 13 13 C 1.40696 * 120.12667 * 194.72624 * 8 4 3 14 14 C 1.41394 * 120.24233 * 359.97438 * 13 8 4 15 15 H 1.07990 * 120.00241 * 30.40366 * 14 13 8 16 16 C 1.39948 * 119.99675 * 210.39678 * 14 13 8 17 17 N 1.30826 * 120.00175 * 8.99227 * 16 14 13 18 18 Si 1.86800 * 119.99790 * 188.99112 * 16 14 13 19 19 H 1.48500 * 109.47318 * 60.00046 * 18 16 14 20 20 H 1.48506 * 109.47049 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47030 * 300.00050 * 18 16 14 22 22 H 1.09001 * 109.47200 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47350 * 300.00228 * 1 2 3 24 24 H 1.09003 * 109.47335 * 60.00482 * 1 2 3 25 25 H 1.09000 * 109.47202 * 240.00277 * 2 1 3 26 26 H 1.09001 * 109.46905 * 119.99816 * 2 1 3 27 27 H 1.08993 * 109.46984 * 35.35638 * 4 3 2 28 28 H 1.08995 * 109.47165 * 293.24408 * 6 5 4 29 29 H 1.08998 * 109.47063 * 53.24263 * 6 5 4 30 30 H 1.09008 * 109.47025 * 59.99997 * 7 6 5 31 31 H 1.09004 * 109.47121 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.47166 * 300.00140 * 7 6 5 33 33 H 1.08001 * 119.87450 * 0.02562 * 9 8 4 34 34 H 1.08006 * 119.75365 * 179.97438 * 10 9 8 35 35 H 1.08003 * 119.87712 * 180.02562 * 11 10 9 36 36 H 1.08003 * 120.12681 * 179.97438 * 12 11 10 37 37 H 0.96996 * 120.00109 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4235 1.4628 -0.1430 5 8 4.0439 1.3271 1.1370 6 6 4.1192 -0.0205 1.6065 7 6 4.9445 -0.0667 2.8940 8 6 3.7614 2.8113 -0.7246 9 6 2.8171 3.8126 -0.7420 10 6 3.1253 5.0539 -1.2759 11 6 4.3856 5.3021 -1.7983 12 6 5.3449 4.3158 -1.7923 13 6 5.0453 3.0536 -1.2467 14 6 6.0254 2.0346 -1.2284 15 1 5.7284 0.9984 -1.2946 16 6 7.3804 2.3689 -1.1248 17 7 7.7320 3.6027 -0.8686 18 14 8.6869 1.0534 -1.3521 19 1 8.5656 0.4646 -2.7100 20 1 10.0331 1.6601 -1.1936 21 1 8.5009 -0.0104 -0.3328 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7866 0.6791 -0.8077 28 1 3.1142 -0.3925 1.8056 29 1 4.5936 -0.6435 0.8483 30 1 4.4700 0.5563 3.6523 31 1 5.0015 -1.0946 3.2524 32 1 5.9495 0.3053 2.6950 33 1 1.8324 3.6304 -0.3375 34 1 2.3781 5.8337 -1.2858 35 1 4.6150 6.2733 -2.2114 36 1 6.3257 4.5111 -2.2001 37 1 8.6711 3.8343 -0.7964 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368575.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:16 Heat of formation + Delta-G solvation = -98.476442 kcal Electronic energy + Delta-G solvation = -18876.981589 eV Core-core repulsion = 16004.282659 eV Total energy + Delta-G solvation = -2872.698930 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51459 -38.89849 -37.22313 -35.48987 -33.34375 -31.72306 -31.46471 -30.99344 -27.37173 -25.77369 -24.30245 -23.26665 -22.65039 -21.56608 -19.15623 -18.37789 -18.21952 -17.41119 -16.62813 -16.12150 -15.73962 -15.62550 -15.08656 -14.57791 -14.55160 -14.30041 -13.76769 -13.49670 -13.34875 -13.15997 -12.89541 -12.81011 -12.75993 -12.71388 -12.62378 -12.31055 -12.10155 -12.01016 -11.43207 -11.15581 -11.06120 -10.82542 -10.47768 -9.33988 -9.23503 -8.56920 -6.35476 0.89019 1.08349 1.36205 1.47426 1.52299 2.20726 2.61489 2.79243 3.08297 3.72483 3.89230 3.95282 4.18236 4.24144 4.31041 4.33004 4.45550 4.52537 4.60547 4.71109 4.79215 4.84233 4.93063 4.98551 5.05026 5.16944 5.23423 5.25264 5.34887 5.46175 5.69598 5.89591 6.05078 6.14747 6.29674 6.39356 6.45125 6.66654 6.94434 7.00891 8.39928 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.009515 C = 0.006798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.551439 B = 2941.949575 C = 4117.668059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.031 3.969 3 O -0.407 6.407 4 C 0.327 3.673 5 O -0.401 6.401 6 C 0.036 3.964 7 C -0.144 4.144 8 C -0.214 4.214 9 C -0.067 4.067 10 C -0.241 4.241 11 C -0.104 4.104 12 C -0.184 4.184 13 C 0.103 3.897 14 C -0.481 4.481 15 H 0.070 0.930 16 C 0.035 3.965 17 N -0.833 5.833 18 Si 0.976 3.024 19 H -0.257 1.257 20 H -0.268 1.268 21 H -0.260 1.260 22 H 0.097 0.903 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.068 -8.616 2.369 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.044 4.044 3 O -0.329 6.329 4 C 0.233 3.767 5 O -0.322 6.322 6 C -0.039 4.039 7 C -0.201 4.201 8 C -0.215 4.215 9 C -0.085 4.085 10 C -0.260 4.260 11 C -0.122 4.122 12 C -0.204 4.204 13 C 0.101 3.899 14 C -0.511 4.511 15 H 0.089 0.911 16 C -0.178 4.178 17 N -0.460 5.460 18 Si 0.796 3.204 19 H -0.182 1.182 20 H -0.192 1.192 21 H -0.185 1.185 22 H 0.116 0.884 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.064 0.936 33 H 0.130 0.870 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.910 -8.159 2.533 10.388 hybrid contribution 0.862 -0.585 -0.209 1.063 sum -5.048 -8.744 2.324 10.361 Atomic orbital electron populations 1.21737 0.91765 1.03628 1.02772 1.23076 0.97504 0.83220 1.00635 1.87962 1.23207 1.28207 1.93508 1.21099 0.77212 0.94993 0.83393 1.88187 1.78919 1.27996 1.37113 1.22950 1.00023 0.83727 0.97244 1.21741 0.99422 1.03395 0.95578 1.19415 0.97046 0.95212 1.09876 1.20634 0.97978 0.92680 0.97227 1.20801 0.97502 0.97511 1.10177 1.21065 0.93776 0.98202 0.99198 1.21337 0.99121 0.95048 1.04872 1.17677 0.90976 0.93602 0.87680 1.19561 0.91480 0.93872 1.46213 0.91141 1.26659 1.01419 0.98292 0.91464 1.69849 1.19768 1.20699 1.35690 0.85348 0.76536 0.78429 0.80037 1.18166 1.19224 1.18476 0.88448 0.92106 0.92336 0.93183 0.92056 0.93705 0.91585 0.93737 0.92167 0.88203 0.93616 0.86988 0.86129 0.86667 0.87563 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 10.28 71.98 0.74 -2.46 16 2 C 0.03 0.92 6.21 71.98 0.45 1.36 16 3 O -0.41 -16.29 8.84 -126.21 -1.12 -17.41 16 4 C 0.33 14.88 2.35 71.24 0.17 15.04 16 5 O -0.40 -18.38 10.16 -126.21 -1.28 -19.67 16 6 C 0.04 1.24 6.10 71.98 0.44 1.68 16 7 C -0.14 -4.24 10.28 71.98 0.74 -3.50 16 8 C -0.21 -11.08 5.54 -19.40 -0.11 -11.19 16 9 C -0.07 -3.23 9.35 22.22 0.21 -3.03 16 10 C -0.24 -11.03 10.05 22.46 0.23 -10.81 16 11 C -0.10 -5.00 10.02 22.22 0.22 -4.78 16 12 C -0.18 -10.01 8.65 22.73 0.20 -9.81 16 13 C 0.10 5.73 5.53 -21.29 -0.12 5.62 16 14 C -0.48 -26.19 8.35 23.46 0.20 -25.99 16 15 H 0.07 3.69 6.68 -2.92 -0.02 3.67 16 16 C 0.04 1.81 5.27 85.26 0.45 2.26 16 17 N -0.83 -44.74 10.88 21.83 0.24 -44.50 16 18 Si 0.98 38.78 29.57 68.60 2.03 40.81 16 19 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 20 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 22 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.40 7.94 -2.39 -0.02 1.38 16 26 H 0.06 1.64 5.03 -2.39 -0.01 1.63 16 27 H 0.05 2.04 6.41 -2.39 -0.02 2.03 16 28 H 0.07 1.93 5.22 -2.39 -0.01 1.92 16 29 H 0.04 1.48 7.97 -2.39 -0.02 1.46 16 30 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.11 5.02 7.13 -2.91 -0.02 5.00 16 34 H 0.12 4.68 8.06 -2.91 -0.02 4.65 16 35 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 36 H 0.11 5.96 6.31 -2.91 -0.02 5.94 16 37 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 Total: -1.00 -63.74 304.74 4.73 -59.01 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 1.05 Total: 27.35 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 3.81 Total: -45.59 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.24 Total: -44.50 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -2.40 Total: -37.07 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -63.74 4.73 -59.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368575.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.468 kcal (2) G-P(sol) polarization free energy of solvation -63.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds