Wall clock time and date at job start Mon Mar 30 2020 06:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42897 * 109.47484 * 2 1 4 4 C 1.42897 * 114.00719 * 174.29610 * 3 2 1 5 5 O 1.42901 * 109.47016 * 85.09869 * 4 3 2 6 6 C 1.42906 * 114.00107 * 283.34361 * 5 4 3 7 7 C 1.53001 * 109.47423 * 186.79984 * 6 5 4 8 8 C 1.50693 * 109.47509 * 205.09789 * 4 3 2 9 9 C 1.38658 * 119.87506 * 0.29676 * 8 4 3 10 10 C 1.38613 * 120.50144 * 180.25301 * 9 8 4 11 11 C 1.37643 * 120.24858 * 359.44993 * 10 9 8 12 12 C 1.40703 * 119.74251 * 0.26729 * 11 10 9 13 13 C 1.41392 * 120.24132 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99880 * 208.00359 * 13 12 11 15 15 C 1.39937 * 120.00495 * 28.00316 * 13 12 11 16 16 N 1.30824 * 119.99738 * 8.46531 * 15 13 12 17 17 Si 1.86797 * 120.00250 * 188.47052 * 15 13 12 18 18 H 1.48494 * 109.47386 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47159 * 120.00028 * 17 15 13 20 20 H 1.48503 * 109.47143 * 239.99450 * 17 15 13 21 21 C 1.37593 * 119.87754 * 179.97438 * 8 4 3 22 22 H 1.09006 * 109.47200 * 299.99941 * 1 2 3 23 23 H 1.09002 * 109.47353 * 60.00273 * 1 2 3 24 24 H 1.09008 * 109.46940 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47386 * 239.99583 * 2 1 3 26 26 H 1.09002 * 109.47353 * 119.99726 * 2 1 3 27 27 H 1.09008 * 109.46742 * 325.10259 * 4 3 2 28 28 H 1.09002 * 109.47256 * 306.80198 * 6 5 4 29 29 H 1.09002 * 109.47045 * 66.80083 * 6 5 4 30 30 H 1.09002 * 109.47080 * 300.00322 * 7 6 5 31 31 H 1.09002 * 109.46929 * 60.00028 * 7 6 5 32 32 H 1.08993 * 109.46921 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.75091 * 0.02562 * 9 8 4 34 34 H 1.07998 * 119.88077 * 179.71750 * 10 9 8 35 35 H 1.07999 * 120.12850 * 180.25167 * 11 10 9 36 36 H 0.97004 * 120.00168 * 180.02562 * 16 15 13 37 37 H 1.08006 * 120.12682 * 0.04624 * 21 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4248 1.4623 0.1297 5 8 4.0322 1.3415 -1.1581 6 6 4.0948 0.0004 -1.6478 7 6 4.9084 -0.0322 -2.9431 8 6 3.7678 2.8044 0.7230 9 6 2.7556 3.6931 1.0522 10 6 3.0566 4.9330 1.5937 11 6 4.3660 5.2910 1.8211 12 6 5.4011 4.3949 1.4963 13 6 6.7500 4.7520 1.7249 14 1 7.5318 4.3303 1.1105 15 6 7.0721 5.6516 2.7473 16 7 6.1526 6.0343 3.5956 17 14 8.8149 6.3062 2.9006 18 1 9.6589 5.7232 1.8270 19 1 8.8011 7.7856 2.7718 20 1 9.3702 5.9299 4.2255 21 6 5.0838 3.1408 0.9421 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.7953 0.6713 0.7819 28 1 4.5720 -0.6365 -0.9029 29 1 3.0857 -0.3624 -1.8433 30 1 4.4313 0.6047 -3.6880 31 1 5.9175 0.3307 -2.7476 32 1 4.9557 -1.0550 -3.3168 33 1 1.7250 3.4185 0.8820 34 1 2.2605 5.6192 1.8422 35 1 4.5981 6.2560 2.2468 36 1 6.3757 6.6581 4.3040 37 1 5.8705 2.4453 0.6891 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:18 Heat of formation + Delta-G solvation = -99.690137 kcal Electronic energy + Delta-G solvation = -18238.137405 eV Core-core repulsion = 15365.385845 eV Total energy + Delta-G solvation = -2872.751560 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59797 -39.00256 -37.35369 -35.58886 -33.23188 -31.81671 -31.47080 -31.15156 -27.20531 -25.99023 -24.31505 -23.30768 -22.47174 -21.95842 -19.09175 -18.48850 -18.27034 -17.33974 -16.65795 -16.18941 -15.87751 -15.67432 -15.06345 -14.83082 -14.62810 -14.15681 -13.81905 -13.53455 -13.33489 -13.19934 -12.93869 -12.82006 -12.80898 -12.74198 -12.57868 -12.23091 -12.13395 -11.99519 -11.48293 -11.26610 -11.09597 -10.95437 -10.55836 -9.39803 -9.23333 -8.55890 -6.37508 0.90764 0.97736 1.39471 1.50577 1.54683 2.23189 2.49561 2.74197 2.96192 3.63357 3.79053 3.90064 4.11421 4.16193 4.27259 4.29661 4.36381 4.47473 4.59295 4.73911 4.80290 4.82419 4.96514 5.02124 5.04238 5.12521 5.23181 5.24984 5.31232 5.42278 5.62202 5.95771 6.05467 6.09449 6.17490 6.30975 6.35887 6.68137 6.94703 7.00449 8.39697 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026771 B = 0.005534 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.642427 B = 5058.092293 C = 5879.977165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.031 3.969 3 O -0.402 6.402 4 C 0.306 3.694 5 O -0.406 6.406 6 C 0.033 3.967 7 C -0.147 4.147 8 C -0.077 4.077 9 C -0.198 4.198 10 C -0.118 4.118 11 C -0.172 4.172 12 C 0.072 3.928 13 C -0.498 4.498 14 H 0.073 0.927 15 C 0.031 3.969 16 N -0.837 5.837 17 Si 0.987 3.013 18 H -0.260 1.260 19 H -0.264 1.264 20 H -0.265 1.265 21 C -0.203 4.203 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.098 0.902 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.286 0.714 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 -11.371 -5.912 13.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.045 4.045 3 O -0.323 6.323 4 C 0.211 3.789 5 O -0.328 6.328 6 C -0.042 4.042 7 C -0.204 4.204 8 C -0.077 4.077 9 C -0.217 4.217 10 C -0.136 4.136 11 C -0.192 4.192 12 C 0.070 3.930 13 C -0.528 4.528 14 H 0.091 0.909 15 C -0.182 4.182 16 N -0.464 5.464 17 Si 0.808 3.192 18 H -0.183 1.183 19 H -0.189 1.189 20 H -0.190 1.190 21 C -0.223 4.223 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.116 0.884 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.129 0.871 36 H 0.097 0.903 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.017 -10.929 -5.820 13.360 hybrid contribution 0.747 0.077 0.436 0.868 sum -4.270 -10.853 -5.384 12.846 Atomic orbital electron populations 1.21754 0.92118 1.03649 1.02717 1.23122 0.97363 0.82904 1.01085 1.88029 1.22308 1.28503 1.93486 1.21483 0.78649 0.94852 0.83877 1.88156 1.79197 1.29471 1.35971 1.23068 1.00627 0.83069 0.97442 1.21770 0.99725 1.03602 0.95306 1.19103 0.93743 0.94420 1.00476 1.20509 0.98066 0.95014 1.08079 1.21028 0.96115 0.96632 0.99825 1.21534 0.92312 1.00264 1.05092 1.17941 0.94387 0.90539 0.90137 1.19801 0.93115 1.24435 1.15494 0.90894 1.26747 1.03805 0.94151 0.93483 1.69846 1.36745 1.27054 1.12751 0.85082 0.76465 0.78564 0.79085 1.18342 1.18865 1.19002 1.20842 0.94340 0.97094 1.10042 0.92481 0.92239 0.88381 0.91582 0.92541 0.91607 0.92448 0.91523 0.92432 0.92786 0.88164 0.86550 0.86685 0.87051 0.90294 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 10.28 71.98 0.74 -2.16 16 2 C 0.03 0.76 6.22 71.98 0.45 1.21 16 3 O -0.40 -14.30 8.68 -126.21 -1.10 -15.40 16 4 C 0.31 11.93 3.09 71.23 0.22 12.15 16 5 O -0.41 -15.48 10.10 -126.21 -1.28 -16.75 16 6 C 0.03 0.88 6.08 71.98 0.44 1.32 16 7 C -0.15 -3.27 10.28 71.98 0.74 -2.53 16 8 C -0.08 -3.69 5.56 -19.92 -0.11 -3.80 16 9 C -0.20 -9.41 9.39 22.46 0.21 -9.20 16 10 C -0.12 -5.82 10.02 22.22 0.22 -5.59 16 11 C -0.17 -9.54 8.67 22.73 0.20 -9.34 16 12 C 0.07 4.09 5.57 -21.29 -0.12 3.97 16 13 C -0.50 -27.95 9.07 23.46 0.21 -27.73 16 14 H 0.07 3.97 7.86 -2.91 -0.02 3.95 16 15 C 0.03 1.60 5.30 85.25 0.45 2.05 16 16 N -0.84 -44.91 10.67 21.82 0.23 -44.68 16 17 Si 0.99 39.34 29.57 68.60 2.03 41.37 16 18 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 20 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 21 C -0.20 -10.67 9.35 22.73 0.21 -10.46 16 22 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.07 1.42 5.02 -2.39 -0.01 1.41 16 26 H 0.06 1.28 7.96 -2.39 -0.02 1.26 16 27 H 0.07 2.35 7.52 -2.38 -0.02 2.33 16 28 H 0.06 1.36 7.97 -2.39 -0.02 1.34 16 29 H 0.07 1.53 5.26 -2.39 -0.01 1.52 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.12 5.10 6.98 -2.91 -0.02 5.08 16 34 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 35 H 0.11 6.37 6.07 -2.91 -0.02 6.35 16 36 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 37 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -64.67 307.14 4.80 -59.86 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 1.05 Total: 25.71 kcal Atomic # 6 Polarization: -53.98 SS G_CDS: 3.86 Total: -50.12 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.23 Total: -44.68 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -2.37 Total: -32.15 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.37 kcal Total: -64.67 4.80 -59.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.826 kcal (2) G-P(sol) polarization free energy of solvation -64.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds