Wall clock time and date at job start Mon Mar 30 2020 06:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42898 * 109.47227 * 2 1 4 4 C 1.42902 * 113.99872 * 186.82650 * 3 2 1 5 5 O 1.42896 * 109.47240 * 284.87611 * 4 3 2 6 6 C 1.42898 * 113.99917 * 86.10541 * 5 4 3 7 7 C 1.52999 * 109.47330 * 173.98517 * 6 5 4 8 8 C 1.50706 * 109.47043 * 164.87528 * 4 3 2 9 9 C 1.38634 * 119.74890 * 359.72981 * 8 4 3 10 10 C 1.37623 * 120.24773 * 179.71421 * 9 8 4 11 11 C 1.40717 * 119.74118 * 0.57816 * 10 9 8 12 12 C 1.41396 * 120.24230 * 179.68077 * 11 10 9 13 13 H 1.08002 * 119.99911 * 206.53184 * 12 11 10 14 14 C 1.39948 * 120.00059 * 26.52065 * 12 11 10 15 15 N 1.30823 * 119.99624 * 13.09193 * 14 12 11 16 16 Si 1.86801 * 119.99855 * 193.08285 * 14 12 11 17 17 H 1.48494 * 109.47322 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46881 * 120.00679 * 16 14 12 19 19 H 1.48504 * 109.46921 * 240.00195 * 16 14 12 20 20 C 1.40715 * 119.51361 * 359.69399 * 11 10 9 21 21 C 1.37617 * 119.74541 * 0.02562 * 20 11 10 22 22 H 1.09004 * 109.47335 * 59.99780 * 1 2 3 23 23 H 1.08998 * 109.47246 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47195 * 300.00537 * 1 2 3 25 25 H 1.09008 * 109.47034 * 240.00144 * 2 1 3 26 26 H 1.08997 * 109.47453 * 119.99827 * 2 1 3 27 27 H 1.08996 * 109.47441 * 44.88165 * 4 3 2 28 28 H 1.08993 * 109.47384 * 293.98859 * 6 5 4 29 29 H 1.09006 * 109.46794 * 53.98895 * 6 5 4 30 30 H 1.09001 * 109.47508 * 180.02562 * 7 6 5 31 31 H 1.09006 * 109.46973 * 300.00602 * 7 6 5 32 32 H 1.09000 * 109.47247 * 60.00185 * 7 6 5 33 33 H 1.07995 * 119.87701 * 359.97438 * 9 8 4 34 34 H 1.07999 * 120.12994 * 180.27579 * 10 9 8 35 35 H 0.97003 * 119.99803 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.12942 * 179.97438 * 20 11 10 37 37 H 1.07998 * 119.87746 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4222 1.4631 -0.1552 5 8 4.0664 1.1057 1.0692 6 6 4.3078 -0.2956 1.2114 7 6 5.1289 -0.5457 2.4780 8 6 3.7738 2.8846 -0.5115 9 6 2.7682 3.8300 -0.6417 10 6 3.0782 5.1323 -0.9610 11 6 4.4207 5.4998 -1.1675 12 6 4.7506 6.8333 -1.5026 13 1 5.6499 7.0427 -2.0627 14 6 3.9116 7.8819 -1.1086 15 7 2.9715 7.6701 -0.2238 16 14 4.1342 9.5837 -1.8460 17 1 5.2583 9.5597 -2.8160 18 1 2.8872 9.9877 -2.5439 19 1 4.4336 10.5564 -0.7646 20 6 5.4325 4.5305 -1.0383 21 6 5.0999 3.2355 -0.7125 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 3.7564 0.7961 -0.9498 28 1 3.3566 -0.8225 1.2852 29 1 4.8584 -0.6592 0.3438 30 1 5.3135 -1.6145 2.5862 31 1 6.0802 -0.0186 2.4042 32 1 4.5784 -0.1820 3.3456 33 1 1.7381 3.5445 -0.4878 34 1 2.2937 5.8683 -1.0575 35 1 2.3902 8.3970 0.0496 36 1 6.4662 4.8016 -1.1949 37 1 5.8747 2.4899 -0.6124 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368614.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:21 Heat of formation + Delta-G solvation = -85.239198 kcal Electronic energy + Delta-G solvation = -18185.427653 eV Core-core repulsion = 15313.302733 eV Total energy + Delta-G solvation = -2872.124920 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.04574 -37.15620 -35.99619 -33.75692 -31.86256 -30.48279 -29.80007 -29.18193 -26.26581 -23.45841 -23.05154 -22.18338 -20.83755 -19.96412 -17.29210 -17.05523 -16.94453 -15.69018 -15.06651 -14.82211 -14.56225 -13.84438 -13.38895 -13.20445 -12.97829 -12.72190 -12.38760 -12.30351 -11.89891 -11.76636 -11.71797 -11.58538 -11.43021 -11.10680 -10.91390 -10.84594 -10.62422 -10.25112 -9.61843 -9.57679 -9.37956 -9.25598 -9.17119 -7.41481 -7.29331 -6.70927 -4.36671 2.70379 3.08725 3.12099 3.14454 3.15091 3.93647 3.96594 4.19289 4.69816 4.95557 5.14132 5.16940 5.30249 5.32502 5.40325 5.55991 5.65345 5.73619 5.80740 5.92868 6.03844 6.08261 6.18849 6.19071 6.36008 6.49158 7.02445 7.09055 7.23553 7.37244 7.55153 7.56277 7.67704 7.86459 8.08325 8.18395 8.32163 8.67521 8.91034 8.98879 10.22078 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.029961 B = 0.005128 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.330892 B = 5459.383036 C = 6074.775821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.380 6.380 4 C 0.313 3.687 5 O -0.383 6.383 6 C 0.040 3.960 7 C -0.149 4.149 8 C -0.216 4.216 9 C -0.067 4.067 10 C -0.169 4.169 11 C 0.116 3.884 12 C -0.459 4.459 13 H 0.078 0.922 14 C 0.073 3.927 15 N -0.793 5.793 16 Si 0.910 3.090 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.274 1.274 20 C -0.228 4.228 21 C -0.065 4.065 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.280 0.720 36 H 0.094 0.906 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 -12.076 0.704 12.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.301 6.301 4 C 0.219 3.781 5 O -0.304 6.304 6 C -0.036 4.036 7 C -0.206 4.206 8 C -0.217 4.217 9 C -0.085 4.085 10 C -0.188 4.188 11 C 0.113 3.887 12 C -0.489 4.489 13 H 0.096 0.904 14 C -0.144 4.144 15 N -0.419 5.419 16 Si 0.735 3.265 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.200 1.200 20 C -0.247 4.247 21 C -0.084 4.084 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.140 0.860 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.696 -11.646 0.989 11.810 hybrid contribution 0.154 0.271 -0.325 0.451 sum -1.542 -11.374 0.664 11.498 Atomic orbital electron populations 1.21733 0.94008 1.01640 1.03311 1.22682 0.95788 0.85185 0.99487 1.88103 1.23663 1.25088 1.93247 1.21663 0.77043 0.95445 0.83958 1.88235 1.78094 1.21902 1.42210 1.22751 0.98506 0.84110 0.98246 1.21725 1.00655 1.00971 0.97288 1.18475 0.94282 0.91554 1.17433 1.20520 0.97187 0.92901 0.97933 1.21383 0.97018 0.94211 1.06234 1.17702 0.91238 0.92535 0.87214 1.19667 1.07301 0.90829 1.31102 0.90369 1.25938 0.93833 1.01478 0.93192 1.69828 1.15200 1.34252 1.22592 0.86227 0.79365 0.81137 0.79776 1.18437 1.19730 1.19972 1.20926 0.97648 0.93585 1.12590 1.20161 0.93683 0.95707 0.98799 0.91802 0.91634 0.91796 0.93970 0.93152 0.93893 0.93336 0.93855 0.91674 0.91796 0.91897 0.88213 0.86019 0.90899 0.88754 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 37.16 0.38 -1.40 16 2 C 0.05 0.64 6.02 37.16 0.22 0.86 16 3 O -0.38 -7.31 8.70 -59.04 -0.51 -7.82 16 4 C 0.31 6.23 3.10 36.01 0.11 6.35 16 5 O -0.38 -7.44 10.07 -59.04 -0.59 -8.03 16 6 C 0.04 0.57 6.21 37.16 0.23 0.80 16 7 C -0.15 -1.79 10.28 37.16 0.38 -1.41 16 8 C -0.22 -5.10 5.59 -104.33 -0.58 -5.68 16 9 C -0.07 -1.68 9.35 -39.66 -0.37 -2.05 16 10 C -0.17 -4.56 8.68 -38.87 -0.34 -4.90 16 11 C 0.12 3.16 5.57 -106.82 -0.59 2.57 16 12 C -0.46 -12.36 9.07 -37.74 -0.34 -12.70 16 13 H 0.08 2.01 7.88 -52.49 -0.41 1.60 16 14 C 0.07 1.86 5.23 -17.34 -0.09 1.77 16 15 N -0.79 -20.95 10.82 55.55 0.60 -20.35 16 16 Si 0.91 18.84 29.58 -169.99 -5.03 13.81 16 17 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 C -0.23 -5.76 9.80 -38.87 -0.38 -6.14 16 21 C -0.07 -1.53 9.58 -39.66 -0.38 -1.91 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.54 7.98 -51.92 -0.41 0.12 16 26 H 0.05 0.67 5.34 -51.93 -0.28 0.39 16 27 H 0.04 0.78 7.53 -51.93 -0.39 0.39 16 28 H 0.05 0.62 5.04 -51.93 -0.26 0.36 16 29 H 0.04 0.56 7.95 -51.93 -0.41 0.14 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.10 2.39 6.98 -52.49 -0.37 2.02 16 34 H 0.12 3.37 6.13 -52.49 -0.32 3.05 16 35 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 36 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 307.32 15.07 4.63 4.63 Total: -1.00 -29.37 307.32 -8.03 -37.40 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.38 Total: 4.20 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -1.75 Total: -23.84 kcal Atomic # 7 Polarization: -20.95 SS G_CDS: 0.60 Total: -20.35 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -1.11 Total: -15.86 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.37 -8.03 -37.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368614.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.838 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds