Wall clock time and date at job start Mon Mar 30 2020 06:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42898 * 109.47227 * 2 1 4 4 C 1.42902 * 113.99872 * 186.82650 * 3 2 1 5 5 O 1.42896 * 109.47240 * 284.87611 * 4 3 2 6 6 C 1.42898 * 113.99917 * 86.10541 * 5 4 3 7 7 C 1.52999 * 109.47330 * 173.98517 * 6 5 4 8 8 C 1.50706 * 109.47043 * 164.87528 * 4 3 2 9 9 C 1.38634 * 119.74890 * 359.72981 * 8 4 3 10 10 C 1.37623 * 120.24773 * 179.71421 * 9 8 4 11 11 C 1.40717 * 119.74118 * 0.57816 * 10 9 8 12 12 C 1.41396 * 120.24230 * 179.68077 * 11 10 9 13 13 H 1.08002 * 119.99911 * 206.53184 * 12 11 10 14 14 C 1.39948 * 120.00059 * 26.52065 * 12 11 10 15 15 N 1.30823 * 119.99624 * 13.09193 * 14 12 11 16 16 Si 1.86801 * 119.99855 * 193.08285 * 14 12 11 17 17 H 1.48494 * 109.47322 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46881 * 120.00679 * 16 14 12 19 19 H 1.48504 * 109.46921 * 240.00195 * 16 14 12 20 20 C 1.40715 * 119.51361 * 359.69399 * 11 10 9 21 21 C 1.37617 * 119.74541 * 0.02562 * 20 11 10 22 22 H 1.09004 * 109.47335 * 59.99780 * 1 2 3 23 23 H 1.08998 * 109.47246 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47195 * 300.00537 * 1 2 3 25 25 H 1.09008 * 109.47034 * 240.00144 * 2 1 3 26 26 H 1.08997 * 109.47453 * 119.99827 * 2 1 3 27 27 H 1.08996 * 109.47441 * 44.88165 * 4 3 2 28 28 H 1.08993 * 109.47384 * 293.98859 * 6 5 4 29 29 H 1.09006 * 109.46794 * 53.98895 * 6 5 4 30 30 H 1.09001 * 109.47508 * 180.02562 * 7 6 5 31 31 H 1.09006 * 109.46973 * 300.00602 * 7 6 5 32 32 H 1.09000 * 109.47247 * 60.00185 * 7 6 5 33 33 H 1.07995 * 119.87701 * 359.97438 * 9 8 4 34 34 H 1.07999 * 120.12994 * 180.27579 * 10 9 8 35 35 H 0.97003 * 119.99803 * 179.97438 * 15 14 12 36 36 H 1.08002 * 120.12942 * 179.97438 * 20 11 10 37 37 H 1.07998 * 119.87746 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4222 1.4631 -0.1552 5 8 4.0664 1.1057 1.0692 6 6 4.3078 -0.2956 1.2114 7 6 5.1289 -0.5457 2.4780 8 6 3.7738 2.8846 -0.5115 9 6 2.7682 3.8300 -0.6417 10 6 3.0782 5.1323 -0.9610 11 6 4.4207 5.4998 -1.1675 12 6 4.7506 6.8333 -1.5026 13 1 5.6499 7.0427 -2.0627 14 6 3.9116 7.8819 -1.1086 15 7 2.9715 7.6701 -0.2238 16 14 4.1342 9.5837 -1.8460 17 1 5.2583 9.5597 -2.8160 18 1 2.8872 9.9877 -2.5439 19 1 4.4336 10.5564 -0.7646 20 6 5.4325 4.5305 -1.0383 21 6 5.0999 3.2355 -0.7125 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 3.7564 0.7961 -0.9498 28 1 3.3566 -0.8225 1.2852 29 1 4.8584 -0.6592 0.3438 30 1 5.3135 -1.6145 2.5862 31 1 6.0802 -0.0186 2.4042 32 1 4.5784 -0.1820 3.3456 33 1 1.7381 3.5445 -0.4878 34 1 2.2937 5.8683 -1.0575 35 1 2.3902 8.3970 0.0496 36 1 6.4662 4.8016 -1.1949 37 1 5.8747 2.4899 -0.6124 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368614.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:21 Heat of formation + Delta-G solvation = -101.259939 kcal Electronic energy + Delta-G solvation = -18186.122365 eV Core-core repulsion = 15313.302733 eV Total energy + Delta-G solvation = -2872.819632 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.51958 -38.98420 -37.29928 -35.64292 -33.18613 -31.63070 -31.49227 -31.08930 -28.05790 -25.04464 -24.28559 -23.34955 -22.66916 -21.81532 -19.24484 -18.38804 -18.28443 -17.42403 -16.74872 -16.07092 -15.69852 -15.64544 -15.05934 -14.73753 -14.55144 -14.01282 -13.76618 -13.71056 -13.44836 -13.29189 -12.89994 -12.81813 -12.79111 -12.76865 -12.46608 -12.43514 -12.03541 -11.89219 -11.42290 -11.27533 -11.09750 -10.88565 -10.52720 -9.39266 -9.26180 -8.61731 -6.38910 0.85225 1.13444 1.38994 1.48378 1.55073 2.21261 2.53925 2.74566 3.02728 3.67557 3.86973 3.93515 4.16888 4.19473 4.29922 4.31982 4.42304 4.51731 4.55159 4.60191 4.80250 4.83804 4.97184 5.04552 5.05303 5.14706 5.23798 5.25200 5.33054 5.43060 5.68888 5.86820 6.03845 6.08779 6.29004 6.33287 6.41051 6.68269 6.91670 6.99865 8.34344 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.029961 B = 0.005128 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.330892 B = 5459.383036 C = 6074.775821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.036 3.964 3 O -0.409 6.409 4 C 0.318 3.682 5 O -0.411 6.411 6 C 0.031 3.969 7 C -0.147 4.147 8 C -0.218 4.218 9 C -0.074 4.074 10 C -0.192 4.192 11 C 0.084 3.916 12 C -0.495 4.495 13 H 0.080 0.920 14 C 0.030 3.970 15 N -0.829 5.829 16 Si 0.989 3.011 17 H -0.256 1.256 18 H -0.264 1.264 19 H -0.266 1.266 20 C -0.241 4.241 21 C -0.065 4.065 22 H 0.056 0.944 23 H 0.098 0.902 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.288 0.712 36 H 0.105 0.895 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 -13.654 0.613 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.040 4.040 3 O -0.330 6.330 4 C 0.224 3.776 5 O -0.333 6.333 6 C -0.045 4.045 7 C -0.204 4.204 8 C -0.219 4.219 9 C -0.092 4.092 10 C -0.212 4.212 11 C 0.082 3.918 12 C -0.524 4.524 13 H 0.098 0.902 14 C -0.184 4.184 15 N -0.455 5.455 16 Si 0.809 3.191 17 H -0.179 1.179 18 H -0.189 1.189 19 H -0.191 1.191 20 C -0.261 4.261 21 C -0.083 4.083 22 H 0.075 0.925 23 H 0.117 0.883 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.377 -13.259 0.906 13.361 hybrid contribution 0.029 0.552 -0.230 0.599 sum -1.348 -12.706 0.676 12.795 Atomic orbital electron populations 1.21769 0.92573 1.03581 1.02503 1.23009 0.96994 0.83112 1.00863 1.88054 1.23146 1.28358 1.93473 1.21382 0.77852 0.93341 0.85039 1.88163 1.78157 1.25292 1.41727 1.23091 0.99960 0.81539 0.99892 1.21762 0.99657 1.03045 0.95925 1.18952 0.93939 0.93636 1.15388 1.20645 0.98054 0.92673 0.97866 1.21335 0.96805 0.94846 1.08175 1.18055 0.91845 0.93625 0.88282 1.19939 1.08396 0.91556 1.32547 0.90197 1.26861 0.93007 1.05553 0.92963 1.69895 1.16076 1.35972 1.23597 0.85065 0.79568 0.75500 0.78975 1.17892 1.18865 1.19060 1.21167 0.97864 0.94239 1.12811 1.20461 0.94586 0.95645 0.97596 0.92500 0.88286 0.92747 0.92159 0.92027 0.91566 0.91783 0.92188 0.88317 0.92606 0.92727 0.87795 0.87770 0.90135 0.87675 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 10.28 71.98 0.74 -2.46 16 2 C 0.04 0.92 6.02 71.98 0.43 1.36 16 3 O -0.41 -15.22 8.70 -126.21 -1.10 -16.32 16 4 C 0.32 12.17 3.10 71.24 0.22 12.39 16 5 O -0.41 -15.22 10.07 -126.21 -1.27 -16.50 16 6 C 0.03 0.78 6.21 71.98 0.45 1.22 16 7 C -0.15 -3.12 10.28 71.98 0.74 -2.38 16 8 C -0.22 -10.23 5.59 -19.67 -0.11 -10.34 16 9 C -0.07 -3.80 9.35 22.22 0.21 -3.59 16 10 C -0.19 -10.81 8.68 22.73 0.20 -10.61 16 11 C 0.08 4.76 5.57 -21.29 -0.12 4.65 16 12 C -0.50 -27.46 9.07 23.46 0.21 -27.24 16 13 H 0.08 4.22 7.88 -2.91 -0.02 4.20 16 14 C 0.03 1.57 5.23 85.26 0.45 2.02 16 15 N -0.83 -45.16 10.82 21.83 0.24 -44.92 16 16 Si 0.99 38.98 29.58 68.60 2.03 41.01 16 17 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 18 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 19 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 20 C -0.24 -12.36 9.80 22.73 0.22 -12.13 16 21 C -0.06 -3.01 9.58 22.22 0.21 -2.79 16 22 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 23 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.34 7.98 -2.38 -0.02 1.32 16 26 H 0.06 1.45 5.34 -2.39 -0.01 1.43 16 27 H 0.07 2.21 7.53 -2.39 -0.02 2.20 16 28 H 0.06 1.42 5.04 -2.39 -0.01 1.40 16 29 H 0.06 1.32 7.95 -2.38 -0.02 1.30 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 5.12 6.98 -2.91 -0.02 5.10 16 34 H 0.10 6.11 6.13 -2.91 -0.02 6.09 16 35 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 36 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 37 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -65.21 307.32 4.79 -60.42 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 1.05 Total: 26.23 kcal Atomic # 6 Polarization: -53.77 SS G_CDS: 3.85 Total: -49.92 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.24 Total: -44.92 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -2.37 Total: -32.81 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -65.21 4.79 -60.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368614.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.840 kcal (2) G-P(sol) polarization free energy of solvation -65.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds