Wall clock time and date at job start Mon Mar 30 2020 06:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47442 * 2 1 4 4 O 1.42901 * 109.47317 * 239.99208 * 2 1 3 5 5 C 1.50701 * 109.46707 * 119.99440 * 2 1 3 6 6 C 1.38265 * 119.94825 * 264.99918 * 5 2 1 7 7 C 1.38141 * 120.06229 * 180.02562 * 6 5 2 8 8 C 1.38737 * 119.93972 * 359.97438 * 7 6 5 9 9 O 1.35897 * 120.05333 * 180.02562 * 8 7 6 10 10 C 1.42905 * 117.00093 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47264 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47130 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00100 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99709 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99653 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00192 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47123 * 89.99910 * 17 15 13 19 19 H 1.48503 * 109.46827 * 209.99657 * 17 15 13 20 20 H 1.48501 * 109.47006 * 329.99902 * 17 15 13 21 21 C 1.38737 * 119.89063 * 0.27773 * 8 7 6 22 22 C 1.38146 * 119.93882 * 359.42344 * 21 8 7 23 23 H 1.08993 * 109.47031 * 300.01095 * 1 2 3 24 24 H 1.09004 * 109.46365 * 60.00477 * 1 2 3 25 25 H 1.08997 * 109.46964 * 180.02562 * 1 2 3 26 26 H 0.96698 * 113.99912 * 300.00371 * 4 2 1 27 27 H 1.08005 * 119.96603 * 0.02562 * 6 5 2 28 28 H 1.07995 * 120.03119 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.47103 * 300.00408 * 10 9 8 30 30 H 1.09004 * 109.47054 * 59.99912 * 10 9 8 31 31 H 1.09001 * 109.46832 * 299.99892 * 11 10 9 32 32 H 1.08992 * 109.47303 * 59.99596 * 11 10 9 33 33 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 34 34 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 35 35 H 0.96997 * 120.00125 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.02659 * 179.72232 * 21 8 7 37 37 H 1.07997 * 119.96925 * 180.31667 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0323 -0.7103 1.2306 6 6 2.3608 0.0154 2.3607 7 6 2.8219 -0.6333 3.4898 8 6 2.9547 -2.0142 3.4894 9 8 3.4076 -2.6548 4.5990 10 6 3.5197 -4.0776 4.5266 11 6 4.0410 -4.6167 5.8602 12 6 4.1616 -6.1399 5.7823 13 6 4.6757 -6.6709 7.0957 14 1 4.8941 -5.9901 7.9051 15 6 4.8662 -8.0260 7.2643 16 7 5.3153 -8.4893 8.4102 17 14 4.4878 -9.2037 5.8645 18 1 5.7027 -9.3885 5.0309 19 1 4.0652 -10.5142 6.4208 20 1 3.3946 -8.6447 5.0292 21 6 2.6295 -2.7397 2.3524 22 6 2.1629 -2.0868 1.2279 23 1 -0.3633 0.5140 0.8898 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.7211 -1.5954 -1.2327 27 1 2.2568 1.0904 2.3606 28 1 3.0779 -0.0660 4.3724 29 1 2.5407 -4.5090 4.3184 30 1 4.2126 -4.3473 3.7294 31 1 5.0201 -4.1852 6.0687 32 1 3.3480 -4.3470 6.6569 33 1 3.1828 -6.5717 5.5736 34 1 4.8550 -6.4093 4.9855 35 1 5.4496 -9.4426 8.5288 36 1 2.7363 -3.8144 2.3481 37 1 1.9047 -2.6516 0.3444 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:41 Heat of formation + Delta-G solvation = -84.983841 kcal Electronic energy + Delta-G solvation = -17304.326610 eV Core-core repulsion = 14432.212763 eV Total energy + Delta-G solvation = -2872.113847 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.28903 -38.56266 -36.54505 -34.14873 -32.09335 -31.65447 -31.05896 -28.93142 -27.36891 -23.93553 -23.78118 -22.09871 -21.04234 -20.22520 -18.27411 -17.28066 -16.81291 -16.17816 -15.93742 -15.29604 -14.96992 -14.45309 -14.24207 -13.77315 -13.57845 -13.38350 -13.23466 -12.84762 -12.66349 -12.29726 -12.12824 -11.91158 -11.37139 -11.31236 -11.08464 -10.67062 -10.64378 -10.42172 -10.10311 -9.88075 -9.77107 -9.27768 -9.12539 -8.59772 -8.12391 -6.09554 -4.08688 1.22233 1.28807 3.26233 3.33606 3.35707 3.37954 3.59341 4.13636 4.39561 4.41626 4.61180 4.75490 4.86153 4.92046 5.17713 5.23270 5.27320 5.34861 5.37031 5.44976 5.50092 5.65830 5.74368 5.77881 5.89180 6.12402 6.29379 6.35862 6.38249 6.39967 6.70367 6.73747 7.16777 7.28288 7.28976 7.52684 7.71930 8.47538 8.95130 9.51644 11.03785 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.041738 B = 0.003472 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.697871 B = 8061.494717 C = 8562.769880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.150 3.850 3 H 0.104 0.896 4 O -0.560 6.560 5 C -0.167 4.167 6 C -0.072 4.072 7 C -0.155 4.155 8 C 0.141 3.859 9 O -0.313 6.313 10 C 0.056 3.944 11 C -0.101 4.101 12 C -0.010 4.010 13 C -0.523 4.523 14 H 0.074 0.926 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.207 4.207 22 C -0.072 4.072 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.373 0.627 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.264 0.736 36 H 0.131 0.869 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.274 15.945 -16.945 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 H 0.122 0.878 4 O -0.366 6.366 5 C -0.168 4.168 6 C -0.090 4.090 7 C -0.174 4.174 8 C 0.095 3.905 9 O -0.227 6.227 10 C -0.018 4.018 11 C -0.139 4.139 12 C -0.047 4.047 13 C -0.560 4.560 14 H 0.092 0.908 15 C -0.135 4.135 16 N -0.540 5.540 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.226 4.226 22 C -0.090 4.090 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.221 0.779 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.149 0.851 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.892 16.417 -16.759 25.089 hybrid contribution -0.437 -1.542 -0.547 1.694 sum -9.329 14.875 -17.306 24.654 Atomic orbital electron populations 1.22499 0.95696 1.02839 1.02754 1.20700 0.92743 0.95786 0.81689 0.87789 1.86607 1.77377 1.29164 1.43450 1.20361 1.05163 0.94324 0.96935 1.20704 0.97080 0.99486 0.91779 1.20456 1.05437 0.91574 0.99890 1.19174 0.92824 0.92241 0.86280 1.86135 1.79569 1.22953 1.34000 1.23225 1.00651 0.76440 1.01511 1.21520 1.01276 0.97949 0.93112 1.19514 0.96773 0.90217 0.98198 1.21067 1.43934 0.93016 0.98023 0.90808 1.25028 0.94517 0.98302 0.95605 1.69907 1.45954 1.14008 1.24122 0.86770 0.79226 0.80466 0.82769 1.20203 1.21257 1.19073 1.21315 1.06678 1.00712 0.93897 1.20580 0.97538 0.93549 0.97328 0.91314 0.91661 0.92178 0.77850 0.85505 0.85055 0.92347 0.92319 0.91556 0.91542 0.96382 0.96799 0.92619 0.85106 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 9.52 37.16 0.35 -0.87 16 2 C 0.15 1.25 3.83 -27.88 -0.11 1.14 16 3 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 4 O -0.56 -5.16 13.14 -35.23 -0.46 -5.62 16 5 C -0.17 -1.69 5.01 -104.60 -0.52 -2.22 16 6 C -0.07 -0.75 9.67 -39.61 -0.38 -1.13 16 7 C -0.15 -1.91 9.99 -39.43 -0.39 -2.31 16 8 C 0.14 2.02 6.69 -39.21 -0.26 1.76 16 9 O -0.31 -5.16 10.14 -19.42 -0.20 -5.36 16 10 C 0.06 0.92 4.74 37.16 0.18 1.10 16 11 C -0.10 -2.00 5.52 -26.73 -0.15 -2.15 16 12 C -0.01 -0.22 4.04 -27.88 -0.11 -0.34 16 13 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 14 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 17 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 21 C -0.21 -2.65 9.04 -39.43 -0.36 -3.00 16 22 C -0.07 -0.77 9.32 -39.60 -0.37 -1.14 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.37 2.29 7.39 45.56 0.34 2.62 16 27 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 28 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.06 0.90 7.67 -51.93 -0.40 0.50 16 30 H 0.06 0.90 7.65 -51.93 -0.40 0.51 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 34 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.13 1.59 6.30 -52.49 -0.33 1.26 16 37 H 0.12 0.95 6.61 -52.49 -0.35 0.60 16 LS Contribution 309.51 15.07 4.66 4.66 Total: -1.00 -31.85 309.51 -7.31 -39.16 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.87 Total: -0.19 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -2.56 Total: -22.46 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.66 Total: -10.98 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.85 -7.31 -39.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.820 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds