Wall clock time and date at job start Mon Mar 30 2020 06:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47442 * 2 1 4 4 O 1.42901 * 109.47317 * 239.99208 * 2 1 3 5 5 C 1.50701 * 109.46707 * 119.99440 * 2 1 3 6 6 C 1.38265 * 119.94825 * 264.99918 * 5 2 1 7 7 C 1.38141 * 120.06229 * 180.02562 * 6 5 2 8 8 C 1.38737 * 119.93972 * 359.97438 * 7 6 5 9 9 O 1.35897 * 120.05333 * 180.02562 * 8 7 6 10 10 C 1.42905 * 117.00093 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47264 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47130 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00100 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99709 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99653 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00192 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47123 * 89.99910 * 17 15 13 19 19 H 1.48503 * 109.46827 * 209.99657 * 17 15 13 20 20 H 1.48501 * 109.47006 * 329.99902 * 17 15 13 21 21 C 1.38737 * 119.89063 * 0.27773 * 8 7 6 22 22 C 1.38146 * 119.93882 * 359.42344 * 21 8 7 23 23 H 1.08993 * 109.47031 * 300.01095 * 1 2 3 24 24 H 1.09004 * 109.46365 * 60.00477 * 1 2 3 25 25 H 1.08997 * 109.46964 * 180.02562 * 1 2 3 26 26 H 0.96698 * 113.99912 * 300.00371 * 4 2 1 27 27 H 1.08005 * 119.96603 * 0.02562 * 6 5 2 28 28 H 1.07995 * 120.03119 * 180.02562 * 7 6 5 29 29 H 1.09001 * 109.47103 * 300.00408 * 10 9 8 30 30 H 1.09004 * 109.47054 * 59.99912 * 10 9 8 31 31 H 1.09001 * 109.46832 * 299.99892 * 11 10 9 32 32 H 1.08992 * 109.47303 * 59.99596 * 11 10 9 33 33 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 34 34 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 35 35 H 0.96997 * 120.00125 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.02659 * 179.72232 * 21 8 7 37 37 H 1.07997 * 119.96925 * 180.31667 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0323 -0.7103 1.2306 6 6 2.3608 0.0154 2.3607 7 6 2.8219 -0.6333 3.4898 8 6 2.9547 -2.0142 3.4894 9 8 3.4076 -2.6548 4.5990 10 6 3.5197 -4.0776 4.5266 11 6 4.0410 -4.6167 5.8602 12 6 4.1616 -6.1399 5.7823 13 6 4.6757 -6.6709 7.0957 14 1 4.8941 -5.9901 7.9051 15 6 4.8662 -8.0260 7.2643 16 7 5.3153 -8.4893 8.4102 17 14 4.4878 -9.2037 5.8645 18 1 5.7027 -9.3885 5.0309 19 1 4.0652 -10.5142 6.4208 20 1 3.3946 -8.6447 5.0292 21 6 2.6295 -2.7397 2.3524 22 6 2.1629 -2.0868 1.2279 23 1 -0.3633 0.5140 0.8898 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.7211 -1.5954 -1.2327 27 1 2.2568 1.0904 2.3606 28 1 3.0779 -0.0660 4.3724 29 1 2.5407 -4.5090 4.3184 30 1 4.2126 -4.3473 3.7294 31 1 5.0201 -4.1852 6.0687 32 1 3.3480 -4.3470 6.6569 33 1 3.1828 -6.5717 5.5736 34 1 4.8550 -6.4093 4.9855 35 1 5.4496 -9.4426 8.5288 36 1 2.7363 -3.8144 2.3481 37 1 1.9047 -2.6516 0.3444 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578727.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:40 Heat of formation + Delta-G solvation = -106.001686 kcal Electronic energy + Delta-G solvation = -17305.238012 eV Core-core repulsion = 14432.212763 eV Total energy + Delta-G solvation = -2873.025249 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.23633 -39.47466 -37.40145 -35.95284 -33.92100 -32.51768 -31.97054 -29.92115 -28.89624 -25.33362 -24.61047 -23.31210 -21.90120 -21.86255 -19.28342 -18.94788 -18.02074 -17.21664 -17.11977 -16.32164 -16.04196 -15.71064 -15.28134 -15.14536 -14.78170 -14.50607 -14.32017 -14.03183 -13.83473 -13.47081 -13.29172 -12.85772 -12.76027 -12.65658 -12.15655 -11.92190 -11.84690 -11.78860 -11.65878 -11.42818 -11.36088 -11.09048 -10.78767 -9.98333 -9.07310 -8.31262 -6.37158 0.36223 0.39571 1.36572 1.38757 1.50440 2.23504 2.35406 2.73056 3.03828 3.56385 3.71697 3.78941 3.94317 4.01330 4.06362 4.24821 4.30497 4.38596 4.42348 4.45399 4.61983 4.73887 4.79026 4.88644 4.94066 4.98548 5.08769 5.24023 5.30736 5.38181 5.41685 5.48061 5.60049 5.60559 5.82787 6.24452 6.46111 6.71116 6.78625 7.27412 8.85754 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.041738 B = 0.003472 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.697871 B = 8061.494717 C = 8562.769880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.152 3.848 3 H 0.112 0.888 4 O -0.575 6.575 5 C -0.162 4.162 6 C -0.072 4.072 7 C -0.167 4.167 8 C 0.107 3.893 9 O -0.335 6.335 10 C 0.068 3.932 11 C -0.095 4.095 12 C -0.006 4.006 13 C -0.539 4.539 14 H 0.029 0.971 15 C 0.002 3.998 16 N -0.952 5.952 17 Si 0.955 3.045 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.241 1.241 21 C -0.217 4.217 22 C -0.076 4.076 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.386 0.614 27 H 0.155 0.845 28 H 0.134 0.866 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.029 0.971 34 H 0.027 0.973 35 H 0.267 0.733 36 H 0.135 0.865 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.648 16.386 -20.245 28.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.093 3.907 3 H 0.130 0.870 4 O -0.383 6.383 5 C -0.163 4.163 6 C -0.090 4.090 7 C -0.185 4.185 8 C 0.062 3.938 9 O -0.249 6.249 10 C -0.006 4.006 11 C -0.133 4.133 12 C -0.043 4.043 13 C -0.577 4.577 14 H 0.048 0.952 15 C -0.195 4.195 16 N -0.593 5.593 17 Si 0.778 3.222 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.164 1.164 21 C -0.236 4.236 22 C -0.094 4.094 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.236 0.764 27 H 0.173 0.827 28 H 0.152 0.848 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.152 0.848 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.278 16.884 -20.074 28.172 hybrid contribution -0.008 -1.543 0.503 1.623 sum -10.286 15.341 -19.571 26.911 Atomic orbital electron populations 1.22454 0.94409 1.03163 1.03324 1.20767 0.93634 0.95778 0.80515 0.87046 1.86588 1.77767 1.30333 1.43600 1.20711 1.03722 0.94363 0.97510 1.21050 0.95917 1.00977 0.91009 1.20681 1.05816 0.91109 1.00943 1.19481 0.94942 0.93052 0.86338 1.86055 1.80679 1.22566 1.35617 1.22920 1.01415 0.77077 0.99217 1.21300 1.00698 0.96087 0.95208 1.19424 0.97067 0.92272 0.95548 1.21444 1.44050 0.92899 0.99266 0.95247 1.26093 0.94171 1.00491 0.98730 1.70074 1.47605 1.14700 1.26881 0.85585 0.80111 0.77446 0.79077 1.18973 1.20982 1.16389 1.21462 1.07029 1.01027 0.94081 1.20925 0.96700 0.94133 0.97595 0.90965 0.90894 0.92008 0.76425 0.82701 0.84779 0.91034 0.91095 0.92733 0.92663 0.95264 0.95444 0.92372 0.84750 0.83553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 9.52 71.98 0.69 -1.16 16 2 C 0.15 2.05 3.83 29.85 0.11 2.16 16 3 H 0.11 1.35 8.05 -2.39 -0.02 1.33 16 4 O -0.57 -8.83 13.14 -148.98 -1.96 -10.79 16 5 C -0.16 -2.84 5.01 -19.85 -0.10 -2.94 16 6 C -0.07 -1.31 9.67 22.25 0.22 -1.10 16 7 C -0.17 -3.96 9.99 22.37 0.22 -3.73 16 8 C 0.11 2.99 6.69 22.51 0.15 3.14 16 9 O -0.33 -11.00 10.14 -92.39 -0.94 -11.94 16 10 C 0.07 2.18 4.74 71.98 0.34 2.52 16 11 C -0.10 -3.80 5.52 30.59 0.17 -3.63 16 12 C -0.01 -0.26 4.04 29.85 0.12 -0.14 16 13 C -0.54 -31.35 9.66 25.60 0.25 -31.11 16 14 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 15 C 0.00 0.11 5.47 84.66 0.46 0.57 16 16 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 17 Si 0.96 43.41 27.47 68.60 1.88 45.30 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 21 C -0.22 -5.18 9.04 22.37 0.20 -4.98 16 22 C -0.08 -1.42 9.32 22.25 0.21 -1.21 16 23 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.07 0.67 8.14 -2.38 -0.02 0.66 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.39 3.48 7.39 -74.06 -0.55 2.94 16 27 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 28 H 0.13 2.96 8.06 -2.91 -0.02 2.94 16 29 H 0.07 2.07 7.67 -2.39 -0.02 2.06 16 30 H 0.07 2.07 7.65 -2.38 -0.02 2.05 16 31 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 34 H 0.03 1.19 7.57 -2.38 -0.02 1.17 16 35 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 36 H 0.13 2.99 6.30 -2.91 -0.02 2.98 16 37 H 0.15 1.83 6.61 -2.91 -0.02 1.81 16 Total: -1.00 -70.10 309.51 2.78 -67.32 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.45 Total: 11.57 kcal Atomic # 6 Polarization: -44.64 SS G_CDS: 3.04 Total: -41.60 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.30 Total: -59.85 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -2.89 Total: -22.73 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.88 Total: 45.30 kcal Total: -70.10 2.78 -67.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578727.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.687 kcal (2) G-P(sol) polarization free energy of solvation -70.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds