Wall clock time and date at job start Mon Mar 30 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 O 1.42898 * 109.47159 * 120.00644 * 2 1 3 5 5 C 1.50701 * 109.46893 * 240.00320 * 2 1 3 6 6 C 1.38265 * 119.94825 * 100.00134 * 5 2 1 7 7 C 1.38141 * 120.06229 * 180.02562 * 6 5 2 8 8 C 1.38737 * 119.93972 * 359.97438 * 7 6 5 9 9 O 1.35897 * 120.05333 * 180.02562 * 8 7 6 10 10 C 1.42905 * 117.00093 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47264 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47130 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00100 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99709 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99896 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99653 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46942 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00266 * 17 15 13 20 20 H 1.48500 * 109.46999 * 240.00165 * 17 15 13 21 21 C 1.38737 * 119.89063 * 0.27773 * 8 7 6 22 22 C 1.38149 * 119.94020 * 359.46855 * 21 8 7 23 23 H 1.08992 * 109.47552 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46773 * 299.99654 * 1 2 3 25 25 H 1.08997 * 109.47123 * 59.99061 * 1 2 3 26 26 H 0.96699 * 114.00553 * 59.99490 * 4 2 1 27 27 H 1.08004 * 119.96780 * 359.97438 * 6 5 2 28 28 H 1.07997 * 120.03246 * 179.97438 * 7 6 5 29 29 H 1.09001 * 109.47103 * 300.00408 * 10 9 8 30 30 H 1.09004 * 109.47054 * 59.99912 * 10 9 8 31 31 H 1.09001 * 109.46832 * 299.99892 * 11 10 9 32 32 H 1.08992 * 109.47303 * 59.99596 * 11 10 9 33 33 H 1.09001 * 109.46997 * 299.99574 * 12 11 10 34 34 H 1.09004 * 109.47298 * 59.99717 * 12 11 10 35 35 H 0.97007 * 119.99539 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.02659 * 179.72232 * 21 8 7 37 37 H 1.07994 * 119.96900 * 180.27568 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.0322 -0.7104 -1.2305 6 6 2.4585 0.0208 -2.3239 7 6 2.9188 -0.6280 -3.4533 8 6 2.9538 -2.0144 -3.4896 9 8 3.4067 -2.6550 -4.5993 10 6 3.4140 -4.0836 -4.5662 11 6 3.9530 -4.6218 -5.8930 12 6 3.9601 -6.1514 -5.8578 13 6 4.4905 -6.6815 -7.1650 14 1 4.7927 -5.9960 -7.9429 15 6 4.5909 -8.0417 -7.3674 16 7 4.2234 -8.8763 -6.4199 17 14 5.2477 -8.6988 -8.9881 18 1 5.5887 -7.5624 -9.8811 19 1 6.4644 -9.5120 -8.7358 20 1 4.2125 -9.5443 -9.6352 21 6 2.5207 -2.7459 -2.3932 22 6 2.0661 -2.0922 -1.2642 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 1.7210 -1.5953 1.2328 27 1 2.4307 1.1001 -2.2953 28 1 3.2513 -0.0564 -4.3072 29 1 4.0511 -4.4250 -3.7503 30 1 2.3986 -4.4486 -4.4112 31 1 3.3161 -4.2805 -6.7091 32 1 4.9683 -4.2568 -6.0476 33 1 4.5968 -6.4930 -5.0417 34 1 2.9445 -6.5160 -5.7035 35 1 4.2937 -9.8333 -6.5625 36 1 2.5427 -3.8253 -2.4208 37 1 1.7330 -2.6611 -0.4088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578728.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:43 Heat of formation + Delta-G solvation = -89.342703 kcal Electronic energy + Delta-G solvation = -17244.935312 eV Core-core repulsion = 14372.632451 eV Total energy + Delta-G solvation = -2872.302862 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21622 -38.48493 -36.47679 -34.05516 -32.02890 -31.51943 -30.98533 -28.80358 -26.93297 -23.91910 -23.77759 -22.20000 -21.00033 -20.24689 -18.20385 -17.21640 -16.45995 -16.02444 -15.82254 -15.23532 -14.85784 -14.52627 -14.36781 -13.65241 -13.51141 -13.38895 -13.13622 -12.74286 -12.31360 -12.19177 -11.99614 -11.79453 -11.27827 -11.08969 -11.00718 -10.62168 -10.59587 -10.45067 -10.35738 -9.79720 -9.56784 -9.17870 -9.06389 -8.41863 -8.05959 -6.06777 -4.09358 1.28450 1.34851 3.28284 3.35615 3.39458 3.47803 3.65354 4.20415 4.42142 4.46760 4.66707 4.81804 4.91062 4.97637 5.24420 5.29612 5.33637 5.40545 5.49385 5.52695 5.60793 5.71122 5.79627 5.90878 5.97212 6.19207 6.36787 6.45952 6.51392 6.56119 6.80128 6.95090 7.33685 7.56038 7.62582 7.67616 7.91825 8.33566 8.97085 9.55230 11.04769 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.054391 B = 0.003146 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.665898 B = 8896.985886 C = 9235.052323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.150 3.850 3 H 0.103 0.897 4 O -0.560 6.560 5 C -0.168 4.168 6 C -0.072 4.072 7 C -0.157 4.157 8 C 0.142 3.858 9 O -0.316 6.316 10 C 0.058 3.942 11 C -0.108 4.108 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.058 0.942 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.207 4.207 22 C -0.071 4.071 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.374 0.626 27 H 0.126 0.874 28 H 0.131 0.869 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.132 0.868 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.745 16.589 12.006 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 H 0.121 0.879 4 O -0.366 6.366 5 C -0.169 4.169 6 C -0.090 4.090 7 C -0.175 4.175 8 C 0.096 3.904 9 O -0.229 6.229 10 C -0.016 4.016 11 C -0.146 4.146 12 C -0.013 4.013 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.225 4.225 22 C -0.089 4.089 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.222 0.778 27 H 0.144 0.856 28 H 0.148 0.852 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.150 0.850 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.412 17.046 11.962 21.789 hybrid contribution 0.000 -1.295 -0.904 1.580 sum -6.412 15.751 11.057 20.285 Atomic orbital electron populations 1.22501 0.95750 1.02848 1.02704 1.20693 0.92721 0.95746 0.81720 0.87878 1.86600 1.77413 1.29177 1.43431 1.20348 1.05019 0.94239 0.97296 1.20706 0.96872 0.99433 0.92023 1.20448 1.05715 0.91505 0.99879 1.19182 0.92612 0.92216 0.86402 1.86132 1.78886 1.22788 1.35075 1.23228 1.00957 0.75824 1.01600 1.21724 1.00493 0.99482 0.92900 1.19052 0.97548 0.86962 0.97717 1.21222 1.42686 0.91644 1.00353 0.92385 1.25029 0.95471 0.97096 0.96883 1.69971 1.48004 1.02588 1.32890 0.86492 0.78615 0.78964 0.83694 1.19653 1.20948 1.20948 1.21342 1.06092 1.00740 0.94371 1.20588 0.97686 0.93512 0.97151 0.92154 0.91698 0.91345 0.77828 0.85576 0.85151 0.92296 0.92317 0.92179 0.92160 0.96303 0.96316 0.92951 0.84978 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 9.51 37.16 0.35 -0.95 16 2 C 0.15 1.31 3.83 -27.88 -0.11 1.21 16 3 H 0.10 0.83 8.00 -51.93 -0.42 0.42 16 4 O -0.56 -5.41 13.19 -35.23 -0.46 -5.88 16 5 C -0.17 -1.79 4.97 -104.60 -0.52 -2.31 16 6 C -0.07 -0.78 9.66 -39.61 -0.38 -1.16 16 7 C -0.16 -2.02 9.99 -39.43 -0.39 -2.41 16 8 C 0.14 2.13 6.69 -39.21 -0.26 1.87 16 9 O -0.32 -5.43 10.14 -19.42 -0.20 -5.63 16 10 C 0.06 1.02 4.74 37.16 0.18 1.20 16 11 C -0.11 -2.25 5.52 -26.73 -0.15 -2.40 16 12 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 13 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 17 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.21 -2.79 9.04 -39.43 -0.36 -3.15 16 22 C -0.07 -0.80 9.31 -39.60 -0.37 -1.17 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.37 2.47 7.50 45.56 0.34 2.81 16 27 H 0.13 1.01 8.03 -52.48 -0.42 0.59 16 28 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.06 0.99 7.67 -51.93 -0.40 0.60 16 30 H 0.06 0.98 7.65 -51.93 -0.40 0.59 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.13 1.73 6.30 -52.49 -0.33 1.40 16 37 H 0.12 1.01 6.78 -52.49 -0.36 0.66 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -31.26 313.31 -7.68 -38.94 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.90 Total: -0.54 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -2.56 Total: -22.24 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.74 Total: -25.86 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.66 Total: -11.50 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.26 -7.68 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578728.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.402 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds