Wall clock time and date at job start Mon Mar 30 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47293 * 2 1 4 4 O 1.42900 * 109.47546 * 119.99807 * 2 1 3 5 5 C 1.50701 * 109.47161 * 239.99576 * 2 1 3 6 6 C 1.38165 * 120.03340 * 265.00062 * 5 2 1 7 7 C 1.38244 * 120.05717 * 179.74420 * 6 5 2 8 8 C 1.38286 * 120.11199 * 359.97438 * 7 6 5 9 9 C 1.38119 * 120.05462 * 0.02562 * 8 7 6 10 10 C 1.38713 * 120.02363 * 84.72230 * 5 2 1 11 11 O 1.35901 * 120.05607 * 0.25615 * 10 5 2 12 12 C 1.42905 * 117.00063 * 179.97438 * 11 10 5 13 13 C 1.52994 * 109.47453 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47533 * 179.97438 * 13 12 11 15 15 C 1.50692 * 109.47222 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00442 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00106 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00043 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00325 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47217 * 89.99504 * 19 17 15 21 21 H 1.48500 * 109.47067 * 209.99600 * 19 17 15 22 22 H 1.48503 * 109.47054 * 329.99862 * 19 17 15 23 23 H 1.08998 * 109.46872 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46984 * 299.99752 * 1 2 3 25 25 H 1.08994 * 109.47354 * 60.00267 * 1 2 3 26 26 H 0.96703 * 113.99758 * 59.99870 * 4 2 1 27 27 H 1.07997 * 119.96912 * 359.72266 * 6 5 2 28 28 H 1.07998 * 119.94034 * 179.97438 * 7 6 5 29 29 H 1.07999 * 119.97218 * 180.02562 * 8 7 6 30 30 H 1.08005 * 120.02406 * 179.97438 * 9 8 7 31 31 H 1.09007 * 109.46892 * 300.00164 * 12 11 10 32 32 H 1.08998 * 109.46929 * 59.99815 * 12 11 10 33 33 H 1.08997 * 109.46780 * 300.00278 * 13 12 11 34 34 H 1.09003 * 109.47267 * 59.99456 * 13 12 11 35 35 H 1.09002 * 109.46456 * 299.99873 * 14 13 12 36 36 H 1.08998 * 109.46887 * 59.99696 * 14 13 12 37 37 H 0.96999 * 120.00270 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0323 -0.7105 -1.2304 6 6 2.3611 -2.0511 -1.1691 7 6 2.8170 -2.7046 -2.2988 8 6 2.9446 -2.0190 -3.4929 9 6 2.6172 -0.6788 -3.5594 10 6 2.1595 -0.0205 -2.4270 11 8 1.8364 1.2980 -2.4901 12 6 1.9927 1.9446 -3.7549 13 6 1.5838 3.4136 -3.6308 14 6 1.7518 4.1060 -4.9848 15 6 1.3496 5.5530 -4.8624 16 1 1.0078 5.9402 -3.9138 17 6 1.4168 6.3826 -5.9616 18 7 1.8325 5.9112 -7.1168 19 14 0.9175 8.1763 -5.8100 20 1 2.1017 8.9897 -5.4341 21 1 0.3825 8.6527 -7.1108 22 1 -0.1285 8.3123 -4.7647 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7211 -1.5952 1.2329 27 1 2.2622 -2.5887 -0.2377 28 1 3.0738 -3.7524 -2.2486 29 1 3.3005 -2.5319 -4.3741 30 1 2.7175 -0.1437 -4.4922 31 1 3.0351 1.8831 -4.0679 32 1 1.3616 1.4525 -4.4949 33 1 0.5416 3.4753 -3.3176 34 1 2.2153 3.9053 -2.8908 35 1 2.7942 4.0442 -5.2975 36 1 1.1206 3.6143 -5.7251 37 1 1.8801 6.4949 -7.8900 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:48 Heat of formation + Delta-G solvation = -87.755951 kcal Electronic energy + Delta-G solvation = -17736.171299 eV Core-core repulsion = 14863.937244 eV Total energy + Delta-G solvation = -2872.234055 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.33800 -37.97203 -36.74698 -34.07884 -32.21283 -31.56271 -30.14316 -29.03840 -26.95657 -24.13270 -23.56198 -21.80941 -21.27283 -20.10946 -18.27253 -16.91511 -16.42603 -16.03119 -15.84090 -15.26836 -14.72316 -14.50097 -14.35978 -13.93763 -13.62032 -13.28325 -12.76466 -12.29293 -12.12742 -12.04148 -11.95076 -11.73191 -11.35427 -11.05933 -10.97792 -10.67458 -10.61946 -10.57224 -10.15157 -9.79948 -9.56491 -9.19338 -8.91729 -8.41262 -8.08489 -6.06396 -4.09169 1.24380 1.43469 3.29679 3.35661 3.38233 3.45133 3.69257 4.30648 4.42391 4.54622 4.79207 4.95709 5.11807 5.15726 5.27301 5.29951 5.34136 5.49147 5.55266 5.60995 5.67692 5.83650 5.93211 5.98091 6.09534 6.33294 6.39770 6.46391 6.50998 6.55748 6.82146 6.94797 7.47186 7.55708 7.60748 7.67570 7.91940 8.33600 8.97042 9.55475 11.05118 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032056 B = 0.004045 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.256750 B = 6921.100385 C = 7644.937131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.152 3.848 3 H 0.113 0.887 4 O -0.559 6.559 5 C -0.157 4.157 6 C -0.079 4.079 7 C -0.164 4.164 8 C -0.080 4.080 9 C -0.208 4.208 10 C 0.148 3.852 11 O -0.314 6.314 12 C 0.059 3.941 13 C -0.108 4.108 14 C 0.025 3.975 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.369 0.631 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.132 0.868 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.097 -17.156 10.532 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.093 3.907 3 H 0.131 0.869 4 O -0.365 6.365 5 C -0.158 4.158 6 C -0.097 4.097 7 C -0.183 4.183 8 C -0.099 4.099 9 C -0.227 4.227 10 C 0.101 3.899 11 O -0.227 6.227 12 C -0.016 4.016 13 C -0.146 4.146 14 C -0.012 4.012 15 C -0.560 4.560 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.216 0.784 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.150 0.850 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.125 -16.368 10.599 19.500 hybrid contribution -0.379 0.356 -0.624 0.812 sum -0.254 -16.012 9.975 18.867 Atomic orbital electron populations 1.22423 0.95405 1.02240 1.03286 1.20615 0.93005 0.96198 0.80835 0.86902 1.86642 1.77325 1.28804 1.43710 1.19898 1.06702 0.94612 0.94572 1.20623 0.97919 0.92787 0.98388 1.20936 1.04210 1.00044 0.93061 1.20958 0.97429 0.93642 0.97826 1.21386 1.06394 0.96304 0.98568 1.18847 0.93694 0.84010 0.93301 1.86100 1.81115 1.19156 1.36354 1.23232 1.00813 0.95116 0.82417 1.21723 1.01185 0.89504 1.02148 1.19043 0.97461 0.94981 0.89753 1.21179 1.44224 0.94570 0.96012 0.92437 1.25017 0.95233 0.98849 0.95295 1.69957 1.47130 1.35893 1.00493 0.86550 0.78862 0.84911 0.77446 1.20584 1.21178 1.19785 0.92623 0.91605 0.90866 0.78356 0.85844 0.86120 0.85912 0.84980 0.92300 0.92298 0.92181 0.92152 0.96326 0.96329 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 9.52 37.16 0.35 -1.57 16 2 C 0.15 1.89 3.55 -27.88 -0.10 1.79 16 3 H 0.11 1.59 7.70 -51.93 -0.40 1.19 16 4 O -0.56 -6.40 12.99 -35.23 -0.46 -6.86 16 5 C -0.16 -2.05 5.08 -104.47 -0.53 -2.58 16 6 C -0.08 -0.86 9.30 -39.61 -0.37 -1.23 16 7 C -0.16 -1.73 10.04 -39.56 -0.40 -2.13 16 8 C -0.08 -0.93 10.04 -39.61 -0.40 -1.32 16 9 C -0.21 -2.84 9.04 -39.43 -0.36 -3.20 16 10 C 0.15 2.21 6.66 -39.21 -0.26 1.95 16 11 O -0.31 -5.22 9.28 -19.43 -0.18 -5.40 16 12 C 0.06 1.01 4.74 37.15 0.18 1.19 16 13 C -0.11 -2.21 5.52 -26.73 -0.15 -2.36 16 14 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 15 C -0.52 -14.62 9.11 -34.45 -0.31 -14.93 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 19 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.37 2.72 7.33 45.56 0.33 3.05 16 27 H 0.12 0.97 6.40 -52.49 -0.34 0.63 16 28 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.75 6.30 -52.48 -0.33 1.42 16 31 H 0.06 0.99 7.66 -51.92 -0.40 0.59 16 32 H 0.06 0.97 7.66 -51.93 -0.40 0.58 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 311.65 15.07 4.70 4.70 Total: -1.00 -30.88 311.65 -7.68 -38.56 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.87 Total: 0.75 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -2.58 Total: -22.38 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.64 Total: -12.26 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.88 -7.68 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.194 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds