Wall clock time and date at job start Mon Mar 30 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47293 * 2 1 4 4 O 1.42900 * 109.47546 * 119.99807 * 2 1 3 5 5 C 1.50701 * 109.47161 * 239.99576 * 2 1 3 6 6 C 1.38165 * 120.03340 * 265.00062 * 5 2 1 7 7 C 1.38244 * 120.05717 * 179.74420 * 6 5 2 8 8 C 1.38286 * 120.11199 * 359.97438 * 7 6 5 9 9 C 1.38119 * 120.05462 * 0.02562 * 8 7 6 10 10 C 1.38713 * 120.02363 * 84.72230 * 5 2 1 11 11 O 1.35901 * 120.05607 * 0.25615 * 10 5 2 12 12 C 1.42905 * 117.00063 * 179.97438 * 11 10 5 13 13 C 1.52994 * 109.47453 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47533 * 179.97438 * 13 12 11 15 15 C 1.50692 * 109.47222 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00442 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00106 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00043 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00325 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47217 * 89.99504 * 19 17 15 21 21 H 1.48500 * 109.47067 * 209.99600 * 19 17 15 22 22 H 1.48503 * 109.47054 * 329.99862 * 19 17 15 23 23 H 1.08998 * 109.46872 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46984 * 299.99752 * 1 2 3 25 25 H 1.08994 * 109.47354 * 60.00267 * 1 2 3 26 26 H 0.96703 * 113.99758 * 59.99870 * 4 2 1 27 27 H 1.07997 * 119.96912 * 359.72266 * 6 5 2 28 28 H 1.07998 * 119.94034 * 179.97438 * 7 6 5 29 29 H 1.07999 * 119.97218 * 180.02562 * 8 7 6 30 30 H 1.08005 * 120.02406 * 179.97438 * 9 8 7 31 31 H 1.09007 * 109.46892 * 300.00164 * 12 11 10 32 32 H 1.08998 * 109.46929 * 59.99815 * 12 11 10 33 33 H 1.08997 * 109.46780 * 300.00278 * 13 12 11 34 34 H 1.09003 * 109.47267 * 59.99456 * 13 12 11 35 35 H 1.09002 * 109.46456 * 299.99873 * 14 13 12 36 36 H 1.08998 * 109.46887 * 59.99696 * 14 13 12 37 37 H 0.96999 * 120.00270 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0323 -0.7105 -1.2304 6 6 2.3611 -2.0511 -1.1691 7 6 2.8170 -2.7046 -2.2988 8 6 2.9446 -2.0190 -3.4929 9 6 2.6172 -0.6788 -3.5594 10 6 2.1595 -0.0205 -2.4270 11 8 1.8364 1.2980 -2.4901 12 6 1.9927 1.9446 -3.7549 13 6 1.5838 3.4136 -3.6308 14 6 1.7518 4.1060 -4.9848 15 6 1.3496 5.5530 -4.8624 16 1 1.0078 5.9402 -3.9138 17 6 1.4168 6.3826 -5.9616 18 7 1.8325 5.9112 -7.1168 19 14 0.9175 8.1763 -5.8100 20 1 2.1017 8.9897 -5.4341 21 1 0.3825 8.6527 -7.1108 22 1 -0.1285 8.3123 -4.7647 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.7211 -1.5952 1.2329 27 1 2.2622 -2.5887 -0.2377 28 1 3.0738 -3.7524 -2.2486 29 1 3.3005 -2.5319 -4.3741 30 1 2.7175 -0.1437 -4.4922 31 1 3.0351 1.8831 -4.0679 32 1 1.3616 1.4525 -4.4949 33 1 0.5416 3.4753 -3.3176 34 1 2.2153 3.9053 -2.8908 35 1 2.7942 4.0442 -5.2975 36 1 1.1206 3.6143 -5.7251 37 1 1.8801 6.4949 -7.8900 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578732.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:48 Heat of formation + Delta-G solvation = -107.022336 kcal Electronic energy + Delta-G solvation = -17737.006752 eV Core-core repulsion = 14863.937244 eV Total energy + Delta-G solvation = -2873.069508 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.37757 -39.06765 -37.69669 -35.99221 -33.80160 -32.84006 -31.11260 -30.05855 -28.71522 -25.53266 -24.82280 -23.03098 -22.47500 -21.56819 -19.34739 -18.55010 -17.75067 -17.23641 -17.18216 -16.51628 -16.16187 -15.70125 -15.32718 -15.12134 -14.85390 -14.58587 -14.12989 -13.89966 -13.64115 -13.20302 -12.93845 -12.85011 -12.78759 -12.59831 -12.38367 -12.20381 -12.09677 -11.79701 -11.56048 -11.49718 -11.26957 -11.08864 -10.58490 -9.83943 -9.11374 -8.23634 -6.34705 0.32148 0.47397 1.40263 1.41278 1.52615 2.19755 2.42007 2.76409 3.10380 3.46506 3.61889 3.87953 4.01040 4.02342 4.16379 4.23936 4.25888 4.35729 4.43739 4.50784 4.63080 4.79308 4.80764 4.91270 4.95660 5.04795 5.09986 5.22688 5.41662 5.45233 5.49262 5.55994 5.63102 5.78496 5.86591 6.18195 6.42963 6.80389 6.80863 7.34807 8.88447 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032056 B = 0.004045 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.256750 B = 6921.100385 C = 7644.937131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.156 3.844 3 H 0.086 0.914 4 O -0.567 6.567 5 C -0.166 4.166 6 C -0.078 4.078 7 C -0.156 4.156 8 C -0.085 4.085 9 C -0.225 4.225 10 C 0.113 3.887 11 O -0.327 6.327 12 C 0.073 3.927 13 C -0.095 4.095 14 C 0.029 3.971 15 C -0.546 4.546 16 H 0.060 0.940 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.264 1.264 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.388 0.612 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.146 0.854 30 H 0.126 0.874 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.058 0.942 35 H -0.002 1.002 36 H 0.000 1.000 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.279 -18.628 11.769 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.097 3.903 3 H 0.104 0.896 4 O -0.375 6.375 5 C -0.167 4.167 6 C -0.096 4.096 7 C -0.174 4.174 8 C -0.103 4.103 9 C -0.243 4.243 10 C 0.068 3.932 11 O -0.241 6.241 12 C -0.002 4.002 13 C -0.133 4.133 14 C -0.008 4.008 15 C -0.584 4.584 16 H 0.079 0.921 17 C -0.196 4.196 18 N -0.572 5.572 19 Si 0.790 3.210 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.188 1.188 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.238 0.762 27 H 0.176 0.824 28 H 0.173 0.827 29 H 0.164 0.836 30 H 0.144 0.856 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.017 0.983 36 H 0.018 0.982 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.060 -17.869 11.855 21.444 hybrid contribution -0.281 0.660 -0.967 1.204 sum -0.341 -17.210 10.888 20.367 Atomic orbital electron populations 1.22353 0.94372 1.03333 1.02639 1.20412 0.93696 0.95105 0.81083 0.89573 1.86609 1.77509 1.30391 1.43025 1.20129 1.06921 0.95669 0.93988 1.21068 0.96561 0.91856 1.00083 1.21393 1.02248 1.01541 0.92213 1.21306 0.96816 0.92779 0.99437 1.21508 1.07206 0.97562 0.98062 1.19171 0.95951 0.83270 0.94801 1.86027 1.82051 1.20695 1.35313 1.22843 1.00823 0.93315 0.83232 1.21423 1.01228 0.91452 0.99199 1.18905 0.95565 0.94567 0.91779 1.21626 1.44397 0.96049 0.96338 0.92144 1.25950 0.95031 1.03740 0.94843 1.70078 1.48051 1.37722 1.01306 0.85432 0.78822 0.78964 0.77758 1.19748 1.20569 1.18793 0.90642 0.91028 0.92682 0.76156 0.82424 0.82724 0.83602 0.85603 0.92178 0.91903 0.92149 0.92351 0.98328 0.98195 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 9.52 71.98 0.69 -2.85 16 2 C 0.16 3.76 3.55 29.85 0.11 3.86 16 3 H 0.09 2.51 7.70 -2.39 -0.02 2.49 16 4 O -0.57 -11.83 12.99 -148.98 -1.94 -13.76 16 5 C -0.17 -4.16 5.08 -19.77 -0.10 -4.26 16 6 C -0.08 -1.45 9.30 22.25 0.21 -1.25 16 7 C -0.16 -2.74 10.04 22.28 0.22 -2.51 16 8 C -0.09 -1.79 10.04 22.25 0.22 -1.56 16 9 C -0.22 -6.08 9.04 22.36 0.20 -5.88 16 10 C 0.11 3.40 6.66 22.51 0.15 3.55 16 11 O -0.33 -11.22 9.28 -92.44 -0.86 -12.08 16 12 C 0.07 2.61 4.74 71.98 0.34 2.95 16 13 C -0.10 -4.04 5.52 30.59 0.17 -3.87 16 14 C 0.03 1.52 4.97 29.85 0.15 1.67 16 15 C -0.55 -31.20 9.11 25.60 0.23 -30.96 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 17 C 0.00 0.14 5.46 84.65 0.46 0.60 16 18 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 19 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.39 4.45 7.33 -74.06 -0.54 3.91 16 27 H 0.16 1.76 6.40 -2.91 -0.02 1.74 16 28 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 29 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 30 H 0.13 3.43 6.30 -2.91 -0.02 3.41 16 31 H 0.06 2.10 7.66 -2.38 -0.02 2.09 16 32 H 0.06 2.17 7.66 -2.39 -0.02 2.15 16 33 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -67.23 311.65 3.08 -64.15 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.51 Total: 11.98 kcal Atomic # 6 Polarization: -43.56 SS G_CDS: 3.05 Total: -40.51 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.28 Total: -55.98 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -2.79 Total: -25.84 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -67.23 3.08 -64.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578732.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.877 kcal (2) G-P(sol) polarization free energy of solvation -67.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds